Wall clock time and date at job start Mon Mar 30 2020 04:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00063 * 2 1 4 4 H 1.48498 * 109.46876 * 269.99978 * 3 2 1 5 5 H 1.48498 * 109.47111 * 29.99558 * 3 2 1 6 6 H 1.48494 * 109.47070 * 150.00170 * 3 2 1 7 7 C 1.37873 * 119.99935 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99981 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99982 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47029 * 60.00294 * 9 7 2 11 11 N 1.46894 * 109.47214 * 300.00102 * 9 7 2 12 12 C 1.50707 * 109.47140 * 180.02562 * 9 7 2 13 13 C 1.37998 * 120.06499 * 99.99894 * 12 9 7 14 14 C 1.38321 * 120.13411 * 179.72447 * 13 12 9 15 15 C 1.38366 * 120.27722 * 0.27969 * 14 13 12 16 16 C 1.37958 * 120.13784 * 0.02562 * 15 14 13 17 17 C 1.39478 * 120.06942 * 280.30063 * 12 9 7 18 18 C 1.47993 * 120.13860 * 359.97438 * 17 12 9 19 19 N 1.29635 * 123.08695 * 0.29368 * 18 17 12 20 20 C 1.47580 * 108.44829 * 180.37435 * 19 18 17 21 21 C 1.54818 * 102.00293 * 15.06187 * 20 19 18 22 22 O 1.34931 * 123.08211 * 180.02562 * 18 17 12 23 23 H 0.97004 * 119.99519 * 0.02562 * 1 2 3 24 24 H 1.00894 * 111.00529 * 300.00141 * 11 9 7 25 25 H 1.00902 * 110.99763 * 63.95467 * 11 9 7 26 26 H 1.08002 * 119.93733 * 0.02562 * 13 12 9 27 27 H 1.08000 * 119.86296 * 180.25903 * 14 13 12 28 28 H 1.08000 * 119.93511 * 179.97438 * 15 14 13 29 29 H 1.08004 * 120.07361 * 179.97438 * 16 15 14 30 30 H 1.09004 * 110.92782 * 133.23396 * 20 19 18 31 31 H 1.09007 * 110.92899 * 256.88591 * 20 19 18 32 32 H 1.09000 * 111.04859 * 94.53839 * 21 20 19 33 33 H 1.09000 * 111.04716 * 218.45921 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 1 0.6240 -2.5575 -0.8880 11 7 0.4069 -2.5761 1.2014 12 6 2.2303 -3.6446 0.0027 13 6 2.5219 -4.3038 1.1795 14 6 3.4162 -5.3590 1.1811 15 6 4.0281 -5.7567 0.0055 16 6 3.7496 -5.1017 -1.1763 17 6 2.8485 -4.0366 -1.1845 18 6 2.5448 -3.3300 -2.4489 19 7 1.7177 -2.3345 -2.5222 20 6 1.6520 -1.8843 -3.9261 21 6 2.3035 -3.0719 -4.6759 22 8 3.1074 -3.6595 -3.6302 23 1 -0.4849 0.8401 -0.0004 24 1 0.9651 -2.5241 2.0403 25 1 -0.3005 -1.8566 1.1927 26 1 2.0473 -3.9984 2.1003 27 1 3.6381 -5.8745 2.1038 28 1 4.7258 -6.5810 0.0132 29 1 4.2281 -5.4127 -2.0932 30 1 0.6181 -1.7446 -4.2422 31 1 2.2283 -0.9702 -4.0694 32 1 1.5477 -3.7714 -5.0331 33 1 2.9282 -2.7209 -5.4972 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260867829.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:19 Heat of formation + Delta-G solvation = 31.054610 kcal Electronic energy + Delta-G solvation = -18006.308423 eV Core-core repulsion = 15226.142089 eV Total energy + Delta-G solvation = -2780.166334 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.55465 -38.51689 -34.66320 -32.92972 -31.61073 -31.42173 -29.17546 -28.38570 -25.84276 -23.21089 -23.13387 -21.91657 -20.12702 -19.39897 -16.80138 -16.46760 -16.11018 -15.52342 -15.01016 -14.51272 -14.32286 -13.75391 -13.55582 -12.86228 -12.82368 -12.50459 -12.26898 -12.01774 -11.55220 -11.49474 -11.41030 -11.02948 -10.85440 -10.54575 -10.42767 -9.93486 -9.62043 -9.02560 -8.88357 -8.44472 -7.98472 -7.75808 -7.06790 -5.90413 -3.98086 1.50821 2.11800 3.13914 3.29760 3.36450 3.40599 3.71075 4.41585 4.57890 4.62298 5.06303 5.21406 5.34408 5.44454 5.51100 5.57217 5.72821 5.81075 5.96957 6.06348 6.20472 6.24055 6.53136 6.68044 6.71761 6.86059 7.04225 7.20169 7.26447 7.58373 7.90430 8.06121 8.27940 8.41510 8.86179 9.08811 9.24926 9.66077 11.10047 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.017371 B = 0.011164 C = 0.007906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.510691 B = 2507.571108 C = 3540.603219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.072 3.928 3 Si 0.886 3.114 4 H -0.284 1.284 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.500 4.500 8 H 0.045 0.955 9 C 0.230 3.770 10 H 0.093 0.907 11 N -0.856 5.856 12 C 0.018 3.982 13 C -0.121 4.121 14 C -0.105 4.105 15 C -0.157 4.157 16 C -0.087 4.087 17 C -0.055 4.055 18 C 0.318 3.682 19 N -0.449 5.449 20 C -0.018 4.018 21 C 0.020 3.980 22 O -0.353 6.353 23 H 0.260 0.740 24 H 0.306 0.694 25 H 0.356 0.644 26 H 0.130 0.870 27 H 0.115 0.885 28 H 0.116 0.884 29 H 0.121 0.879 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.642 -7.631 -4.254 9.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.129 4.129 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.540 4.540 8 H 0.063 0.937 9 C 0.120 3.880 10 H 0.110 0.890 11 N -0.386 5.386 12 C 0.015 3.985 13 C -0.140 4.140 14 C -0.124 4.124 15 C -0.175 4.175 16 C -0.107 4.107 17 C -0.057 4.057 18 C 0.095 3.905 19 N -0.180 5.180 20 C -0.147 4.147 21 C -0.057 4.057 22 O -0.258 6.258 23 H 0.070 0.930 24 H 0.116 0.884 25 H 0.173 0.827 26 H 0.148 0.852 27 H 0.133 0.867 28 H 0.134 0.866 29 H 0.139 0.861 30 H 0.114 0.886 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 3.849 -7.742 -4.193 9.609 hybrid contribution 1.328 1.872 -0.742 2.412 sum 5.176 -5.870 -4.935 9.252 Atomic orbital electron populations 1.69730 1.05565 1.26345 1.51678 1.24804 0.94717 0.98380 0.95013 0.86707 0.79906 0.84044 0.77896 1.21031 1.21417 1.20221 1.21406 0.92654 0.90571 1.49356 0.93709 1.18486 0.89671 0.87420 0.92390 0.88995 1.59700 1.18637 1.56091 1.04168 1.20706 0.93344 0.94328 0.90128 1.20991 0.98299 0.96028 0.98655 1.21242 0.96623 0.96995 0.97582 1.20794 1.02456 1.01517 0.92725 1.21071 0.96654 0.94738 0.98217 1.17587 1.01914 0.97398 0.88783 1.23549 0.89529 0.91324 0.86139 1.75940 1.18573 1.08920 1.14531 1.24215 1.02315 0.98407 0.89782 1.24503 0.94796 0.95494 0.90913 1.86961 1.50864 1.73493 1.14525 0.93025 0.88437 0.82723 0.85224 0.86698 0.86627 0.86146 0.88611 0.89474 0.90654 0.88124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.77 11.54 55.43 0.64 -24.13 16 2 C 0.07 1.96 5.38 -17.82 -0.10 1.86 16 3 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.50 -13.51 7.30 -34.44 -0.25 -13.76 16 8 H 0.04 1.27 7.74 -52.49 -0.41 0.86 16 9 C 0.23 5.75 2.23 -70.02 -0.16 5.60 16 10 H 0.09 2.56 5.87 -51.93 -0.30 2.26 16 11 N -0.86 -20.42 8.66 -6.65 -0.06 -20.48 16 12 C 0.02 0.39 5.06 -104.24 -0.53 -0.14 16 13 C -0.12 -2.34 9.24 -39.64 -0.37 -2.71 16 14 C -0.11 -1.70 10.04 -39.50 -0.40 -2.10 16 15 C -0.16 -2.44 10.03 -39.64 -0.40 -2.84 16 16 C -0.09 -1.52 9.67 -39.21 -0.38 -1.90 16 17 C -0.06 -1.15 5.87 -104.96 -0.62 -1.77 16 18 C 0.32 6.71 7.47 -14.48 -0.11 6.60 16 19 N -0.45 -10.12 7.03 -57.66 -0.41 -10.52 16 20 C -0.02 -0.31 8.13 -2.49 -0.02 -0.33 16 21 C 0.02 0.29 8.18 38.12 0.31 0.61 16 22 O -0.35 -6.50 10.69 -16.51 -0.18 -6.68 16 23 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 24 H 0.31 6.87 7.28 -39.30 -0.29 6.58 16 25 H 0.36 9.15 7.08 -39.29 -0.28 8.87 16 26 H 0.13 2.40 6.24 -52.49 -0.33 2.07 16 27 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 28 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 29 H 0.12 1.88 7.77 -52.48 -0.41 1.47 16 30 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 31 H 0.09 1.52 8.14 -51.92 -0.42 1.10 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 276.36 15.07 4.16 4.16 Total: -1.00 -29.55 276.36 -7.54 -37.09 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: -3.68 Total: 14.84 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -3.00 Total: -10.87 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: 0.18 Total: -55.13 kcal Atomic # 8 Polarization: -6.50 SS G_CDS: -0.18 Total: -6.68 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -29.55 -7.54 -37.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260867829.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.146 kcal (2) G-P(sol) polarization free energy of solvation -29.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds