Wall clock time and date at job start Mon Mar 30 2020 04:21:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00063 * 2 1 4 4 H 1.48498 * 109.46876 * 269.99978 * 3 2 1 5 5 H 1.48498 * 109.47111 * 29.99558 * 3 2 1 6 6 H 1.48494 * 109.47070 * 150.00170 * 3 2 1 7 7 C 1.37873 * 119.99935 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99981 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99982 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47029 * 60.00294 * 9 7 2 11 11 N 1.46894 * 109.47214 * 300.00102 * 9 7 2 12 12 C 1.50707 * 109.47140 * 180.02562 * 9 7 2 13 13 C 1.37998 * 120.06499 * 99.99894 * 12 9 7 14 14 C 1.38321 * 120.13411 * 179.72447 * 13 12 9 15 15 C 1.38366 * 120.27722 * 0.27969 * 14 13 12 16 16 C 1.37958 * 120.13784 * 0.02562 * 15 14 13 17 17 C 1.39478 * 120.06942 * 280.30063 * 12 9 7 18 18 C 1.47993 * 120.13860 * 359.97438 * 17 12 9 19 19 N 1.29635 * 123.08695 * 0.29368 * 18 17 12 20 20 C 1.47580 * 108.44829 * 180.37435 * 19 18 17 21 21 C 1.54818 * 102.00293 * 15.06187 * 20 19 18 22 22 O 1.34931 * 123.08211 * 180.02562 * 18 17 12 23 23 H 0.97004 * 119.99519 * 0.02562 * 1 2 3 24 24 H 1.00894 * 111.00529 * 300.00141 * 11 9 7 25 25 H 1.00902 * 110.99763 * 63.95467 * 11 9 7 26 26 H 1.08002 * 119.93733 * 0.02562 * 13 12 9 27 27 H 1.08000 * 119.86296 * 180.25903 * 14 13 12 28 28 H 1.08000 * 119.93511 * 179.97438 * 15 14 13 29 29 H 1.08004 * 120.07361 * 179.97438 * 16 15 14 30 30 H 1.09004 * 110.92782 * 133.23396 * 20 19 18 31 31 H 1.09007 * 110.92899 * 256.88591 * 20 19 18 32 32 H 1.09000 * 111.04859 * 94.53839 * 21 20 19 33 33 H 1.09000 * 111.04716 * 218.45921 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 1 0.6240 -2.5575 -0.8880 11 7 0.4069 -2.5761 1.2014 12 6 2.2303 -3.6446 0.0027 13 6 2.5219 -4.3038 1.1795 14 6 3.4162 -5.3590 1.1811 15 6 4.0281 -5.7567 0.0055 16 6 3.7496 -5.1017 -1.1763 17 6 2.8485 -4.0366 -1.1845 18 6 2.5448 -3.3300 -2.4489 19 7 1.7177 -2.3345 -2.5222 20 6 1.6520 -1.8843 -3.9261 21 6 2.3035 -3.0719 -4.6759 22 8 3.1074 -3.6595 -3.6302 23 1 -0.4849 0.8401 -0.0004 24 1 0.9651 -2.5241 2.0403 25 1 -0.3005 -1.8566 1.1927 26 1 2.0473 -3.9984 2.1003 27 1 3.6381 -5.8745 2.1038 28 1 4.7258 -6.5810 0.0132 29 1 4.2281 -5.4127 -2.0932 30 1 0.6181 -1.7446 -4.2422 31 1 2.2283 -0.9702 -4.0694 32 1 1.5477 -3.7714 -5.0331 33 1 2.9282 -2.7209 -5.4972 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260867829.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:21:18 Heat of formation + Delta-G solvation = 9.369812 kcal Electronic energy + Delta-G solvation = -18007.248747 eV Core-core repulsion = 15226.142089 eV Total energy + Delta-G solvation = -2781.106658 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.98069 -39.95567 -36.46449 -34.45862 -33.37765 -32.95395 -30.74115 -29.77617 -27.82677 -24.89490 -24.47734 -23.37596 -21.71550 -20.89518 -18.46655 -18.22460 -17.55445 -17.08193 -16.40922 -16.33571 -15.76939 -15.36661 -15.08264 -14.68633 -14.24310 -13.98992 -13.77084 -13.71874 -13.12998 -12.95638 -12.85114 -12.78761 -12.69820 -12.39811 -11.91650 -11.85459 -11.32877 -10.68630 -10.42347 -10.26433 -9.49023 -9.27168 -9.02728 -7.95780 -6.10200 0.07453 0.70958 1.32781 1.35740 1.43751 1.67884 2.32867 2.43107 3.11092 3.23988 3.27526 3.79783 4.04053 4.20122 4.20894 4.33916 4.38139 4.51142 4.52091 4.70590 4.82212 4.87056 5.00569 5.15451 5.27600 5.36821 5.62480 5.66125 5.73499 5.79442 6.11897 6.22249 6.28932 6.85256 6.95552 7.07951 7.26035 7.56612 9.01157 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.017371 B = 0.011164 C = 0.007906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.510691 B = 2507.571108 C = 3540.603219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.033 3.967 3 Si 0.936 3.064 4 H -0.287 1.287 5 H -0.282 1.282 6 H -0.277 1.277 7 C -0.498 4.498 8 H 0.023 0.977 9 C 0.236 3.764 10 H 0.060 0.940 11 N -0.848 5.848 12 C -0.019 4.019 13 C -0.137 4.137 14 C -0.093 4.093 15 C -0.141 4.141 16 C -0.086 4.086 17 C -0.083 4.083 18 C 0.316 3.684 19 N -0.504 5.504 20 C -0.025 4.025 21 C 0.027 3.973 22 O -0.358 6.358 23 H 0.259 0.741 24 H 0.313 0.687 25 H 0.344 0.656 26 H 0.129 0.871 27 H 0.156 0.844 28 H 0.162 0.838 29 H 0.140 0.860 30 H 0.101 0.899 31 H 0.082 0.918 32 H 0.096 0.904 33 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.467 -9.406 -4.387 12.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.166 4.166 3 Si 0.763 3.237 4 H -0.214 1.214 5 H -0.207 1.207 6 H -0.203 1.203 7 C -0.538 4.538 8 H 0.041 0.959 9 C 0.126 3.874 10 H 0.078 0.922 11 N -0.376 5.376 12 C -0.021 4.021 13 C -0.155 4.155 14 C -0.111 4.111 15 C -0.158 4.158 16 C -0.106 4.106 17 C -0.085 4.085 18 C 0.093 3.907 19 N -0.236 5.236 20 C -0.155 4.155 21 C -0.049 4.049 22 O -0.263 6.263 23 H 0.068 0.932 24 H 0.123 0.877 25 H 0.159 0.841 26 H 0.146 0.854 27 H 0.173 0.827 28 H 0.179 0.821 29 H 0.158 0.842 30 H 0.119 0.881 31 H 0.100 0.900 32 H 0.114 0.886 33 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 5.687 -9.530 -4.330 11.913 hybrid contribution 0.809 2.323 -0.730 2.566 sum 6.497 -7.207 -5.060 10.943 Atomic orbital electron populations 1.69825 1.06354 1.26672 1.52563 1.25343 0.95389 1.00724 0.95157 0.85928 0.78898 0.81333 0.77514 1.21355 1.20712 1.20265 1.21455 0.91519 0.92084 1.48754 0.95852 1.18179 0.89757 0.88181 0.91239 0.92248 1.59673 1.18344 1.55210 1.04421 1.20557 0.94518 0.94908 0.92123 1.21113 0.99578 0.97258 0.97559 1.21664 0.94524 0.95318 0.99643 1.21329 1.01657 1.01453 0.91385 1.21379 0.95554 0.93545 1.00081 1.17887 1.03301 0.98962 0.88354 1.23724 0.88923 0.90942 0.87075 1.75895 1.19968 1.10341 1.17396 1.24286 1.03041 0.99487 0.88647 1.24741 0.95457 0.94372 0.90357 1.86928 1.51316 1.73625 1.14416 0.93168 0.87669 0.84134 0.85363 0.82651 0.82082 0.84171 0.88098 0.89989 0.88637 0.84502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.10 11.54 21.45 0.25 -51.85 16 2 C 0.03 1.82 5.38 84.65 0.46 2.27 16 3 Si 0.94 45.18 29.54 68.60 2.03 47.21 16 4 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 5 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 6 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 7 C -0.50 -27.78 7.30 25.60 0.19 -27.59 16 8 H 0.02 1.36 7.74 -2.91 -0.02 1.34 16 9 C 0.24 12.24 2.23 43.43 0.10 12.34 16 10 H 0.06 3.49 5.87 -2.39 -0.01 3.48 16 11 N -0.85 -41.70 8.66 -174.95 -1.52 -43.22 16 12 C -0.02 -0.83 5.06 -19.62 -0.10 -0.93 16 13 C -0.14 -5.13 9.24 22.23 0.21 -4.92 16 14 C -0.09 -2.65 10.04 22.32 0.22 -2.43 16 15 C -0.14 -3.74 10.03 22.23 0.22 -3.52 16 16 C -0.09 -2.78 9.67 22.51 0.22 -2.56 16 17 C -0.08 -3.46 5.87 -20.08 -0.12 -3.58 16 18 C 0.32 13.48 7.47 87.61 0.65 14.14 16 19 N -0.50 -23.44 7.03 -450.92 -3.17 -26.61 16 20 C -0.03 -0.91 8.13 86.79 0.71 -0.21 16 21 C 0.03 0.74 8.18 72.60 0.59 1.34 16 22 O -0.36 -12.78 10.69 -82.00 -0.88 -13.66 16 23 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 24 H 0.31 14.39 7.28 -89.70 -0.65 13.73 16 25 H 0.34 18.31 7.08 -89.69 -0.63 17.67 16 26 H 0.13 4.69 6.24 -2.91 -0.02 4.67 16 27 H 0.16 3.18 8.06 -2.91 -0.02 3.15 16 28 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 29 H 0.14 3.91 7.77 -2.91 -0.02 3.89 16 30 H 0.10 3.38 8.14 -2.38 -0.02 3.36 16 31 H 0.08 2.93 8.14 -2.38 -0.02 2.91 16 32 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.14 2.78 8.14 -2.39 -0.02 2.76 16 Total: -1.00 -66.40 276.36 -0.08 -66.48 By element: Atomic # 1 Polarization: 37.43 SS G_CDS: -0.14 Total: 37.29 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: 3.35 Total: -15.64 kcal Atomic # 7 Polarization: -117.24 SS G_CDS: -4.44 Total: -121.68 kcal Atomic # 8 Polarization: -12.78 SS G_CDS: -0.88 Total: -13.66 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -66.40 -0.08 -66.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260867829.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.847 kcal (2) G-P(sol) polarization free energy of solvation -66.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.477 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds