Wall clock time and date at job start Mon Mar 30 2020 04:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99968 * 2 1 4 4 H 1.48502 * 109.46923 * 239.99299 * 3 2 1 5 5 H 1.48497 * 109.47338 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46950 * 119.99763 * 3 2 1 7 7 C 1.37879 * 119.99582 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99431 * 186.65631 * 7 2 1 9 9 C 1.50697 * 120.00474 * 6.65576 * 7 2 1 10 10 H 1.08999 * 109.47044 * 328.96374 * 9 7 2 11 11 C 1.52997 * 109.47264 * 208.95757 * 9 7 2 12 12 N 1.46902 * 109.46706 * 65.34492 * 11 9 7 13 13 C 1.50705 * 109.46949 * 88.95505 * 9 7 2 14 14 C 1.38302 * 120.08448 * 60.00595 * 13 9 7 15 15 C 1.37935 * 120.37821 * 180.02562 * 14 13 9 16 16 C 1.39369 * 120.12936 * 0.23026 * 15 14 13 17 17 C 1.38903 * 118.94156 * 359.49812 * 16 15 14 18 18 C 1.37679 * 120.80947 * 0.53129 * 17 16 15 19 19 C 1.51143 * 106.34330 * 180.31487 * 17 16 15 20 20 C 1.51406 * 104.06306 * 359.59957 * 19 17 16 21 21 O 1.21282 * 126.43805 * 180.02562 * 20 19 17 22 22 N 1.34370 * 107.10958 * 0.53773 * 20 19 17 23 23 H 0.96999 * 120.00007 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.47003 * 185.33782 * 11 9 7 25 25 H 1.08994 * 109.47392 * 305.34406 * 11 9 7 26 26 H 1.00891 * 111.00456 * 56.04536 * 12 11 9 27 27 H 1.00904 * 110.99458 * 179.97438 * 12 11 9 28 28 H 1.08006 * 119.81010 * 0.02562 * 14 13 9 29 29 H 1.07994 * 119.93840 * 179.97438 * 15 14 13 30 30 H 1.07998 * 120.04134 * 179.74648 * 18 17 16 31 31 H 1.08995 * 110.51196 * 118.89660 * 19 17 16 32 32 H 1.09007 * 110.50900 * 241.60574 * 19 17 16 33 33 H 0.97003 * 123.86952 * 179.53359 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6963 -1.2124 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0791 -1.1972 0.1090 9 6 1.2586 -2.4949 -0.1501 10 1 0.2656 -2.3972 0.2886 11 6 2.0255 -3.6084 0.5660 12 7 2.0400 -3.3420 2.0106 13 6 1.1303 -2.8338 -1.6130 14 6 2.2636 -3.0083 -2.3862 15 6 2.1531 -3.3180 -3.7258 16 6 0.8956 -3.4528 -4.3113 17 6 -0.2349 -3.2807 -3.5228 18 6 -0.1219 -2.9711 -2.1860 19 6 -1.4237 -3.4954 -4.4311 20 6 -0.8063 -3.7884 -5.7822 21 8 -1.4033 -4.0229 -6.8114 22 7 0.5275 -3.7508 -5.6237 23 1 -0.4850 0.8400 -0.0004 24 1 1.5374 -4.5647 0.3778 25 1 3.0489 -3.6430 0.1926 26 1 1.1023 -3.2412 2.3692 27 1 2.5407 -4.0643 2.5064 28 1 3.2407 -2.9014 -1.9386 29 1 3.0428 -3.4523 -4.3231 30 1 -1.0092 -2.8360 -1.5854 31 1 -2.0230 -4.3369 -4.0835 32 1 -2.0297 -2.5910 -4.4872 33 1 1.1617 -3.9121 -6.3398 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261019990.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:40 Heat of formation + Delta-G solvation = -29.220132 kcal Electronic energy + Delta-G solvation = -17333.581407 eV Core-core repulsion = 14550.801364 eV Total energy + Delta-G solvation = -2782.780043 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.26577 -39.60422 -37.62159 -35.61755 -34.13075 -33.10405 -31.56159 -29.28843 -28.02398 -25.99044 -23.33825 -23.01914 -22.07486 -21.03903 -18.79247 -18.39863 -17.46395 -16.96970 -16.81196 -16.54464 -15.71084 -15.38847 -15.10653 -14.96761 -14.31193 -14.16232 -13.96915 -13.88747 -13.73185 -13.35663 -12.88357 -12.60880 -12.42513 -12.25106 -11.84858 -11.65248 -11.31061 -11.05032 -10.89017 -10.42443 -9.59681 -9.19741 -8.67085 -7.99384 -6.01648 0.40510 0.60735 1.45712 1.47584 1.50748 1.53638 2.09292 2.51997 3.03482 3.19828 3.34459 3.57422 4.03223 4.08238 4.39201 4.50442 4.51226 4.62977 4.67232 4.73207 4.88940 5.03232 5.18486 5.23665 5.32212 5.64673 5.72630 5.75276 5.86031 5.87952 6.15561 6.27929 6.44292 6.63599 6.94680 6.99143 7.06567 7.60137 9.07268 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.023658 B = 0.006863 C = 0.006132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.228466 B = 4078.587064 C = 4564.873868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.019 3.981 3 Si 0.935 3.065 4 H -0.275 1.275 5 H -0.293 1.293 6 H -0.275 1.275 7 C -0.477 4.477 8 H 0.049 0.951 9 C 0.069 3.931 10 H 0.031 0.969 11 C 0.087 3.913 12 N -0.845 5.845 13 C -0.055 4.055 14 C -0.093 4.093 15 C -0.127 4.127 16 C 0.097 3.903 17 C -0.146 4.146 18 C -0.083 4.083 19 C -0.109 4.109 20 C 0.529 3.471 21 O -0.552 6.552 22 N -0.644 5.644 23 H 0.255 0.745 24 H 0.011 0.989 25 H 0.059 0.941 26 H 0.337 0.663 27 H 0.339 0.661 28 H 0.129 0.871 29 H 0.147 0.853 30 H 0.111 0.889 31 H 0.140 0.860 32 H 0.127 0.873 33 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.148 -8.349 -5.014 9.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.180 4.180 3 Si 0.763 3.237 4 H -0.201 1.201 5 H -0.219 1.219 6 H -0.201 1.201 7 C -0.515 4.515 8 H 0.067 0.933 9 C 0.050 3.950 10 H 0.050 0.950 11 C -0.043 4.043 12 N -0.375 5.375 13 C -0.057 4.057 14 C -0.111 4.111 15 C -0.148 4.148 16 C 0.002 3.998 17 C -0.149 4.149 18 C -0.101 4.101 19 C -0.147 4.147 20 C 0.318 3.682 21 O -0.431 6.431 22 N -0.287 5.287 23 H 0.064 0.936 24 H 0.029 0.971 25 H 0.078 0.922 26 H 0.149 0.851 27 H 0.152 0.848 28 H 0.147 0.853 29 H 0.165 0.835 30 H 0.130 0.870 31 H 0.158 0.842 32 H 0.145 0.855 33 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 1.980 -7.681 -5.729 9.785 hybrid contribution 0.066 0.340 -0.082 0.356 sum 2.047 -7.341 -5.811 9.583 Atomic orbital electron populations 1.70006 1.06791 1.26659 1.52371 1.25502 0.95402 1.01543 0.95524 0.85968 0.78609 0.80660 0.78492 1.20098 1.21916 1.20080 1.21001 0.92982 0.90611 1.46925 0.93259 1.17874 0.96757 0.92945 0.87434 0.95039 1.21699 0.99403 0.94812 0.88426 1.58446 1.22239 1.52837 1.03949 1.20553 0.92260 0.94165 0.98743 1.20819 0.98940 0.98629 0.92761 1.20499 0.94823 1.04458 0.95012 1.18056 0.95162 1.02831 0.83799 1.19843 0.94550 1.06369 0.94135 1.20182 0.97771 0.99412 0.92765 1.21056 0.97356 1.06320 0.90002 1.20749 0.82399 0.74635 0.90399 1.90757 1.67258 1.51282 1.33810 1.43482 1.08443 1.66957 1.09835 0.93561 0.97057 0.92249 0.85130 0.84805 0.85299 0.83486 0.87046 0.84206 0.85542 0.74085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.96 12.85 21.45 0.28 -50.69 16 2 C 0.02 0.98 5.45 84.65 0.46 1.45 16 3 Si 0.94 43.01 29.54 68.60 2.03 45.04 16 4 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.29 -13.53 7.11 99.48 0.71 -12.83 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 7 C -0.48 -24.08 7.67 25.60 0.20 -23.88 16 8 H 0.05 2.52 7.82 -2.91 -0.02 2.49 16 9 C 0.07 3.06 2.17 -12.29 -0.03 3.03 16 10 H 0.03 1.59 7.14 -2.39 -0.02 1.57 16 11 C 0.09 3.23 5.90 86.30 0.51 3.74 16 12 N -0.85 -29.71 9.35 -186.73 -1.75 -31.45 16 13 C -0.06 -2.21 4.78 -19.81 -0.09 -2.31 16 14 C -0.09 -3.24 8.85 22.21 0.20 -3.05 16 15 C -0.13 -3.73 10.07 22.47 0.23 -3.50 16 16 C 0.10 2.90 7.11 38.35 0.27 3.17 16 17 C -0.15 -4.73 6.35 -19.70 -0.13 -4.86 16 18 C -0.08 -3.13 9.66 22.17 0.21 -2.92 16 19 C -0.11 -2.90 6.88 29.47 0.20 -2.69 16 20 C 0.53 15.33 8.71 87.95 0.77 16.10 16 21 O -0.55 -18.98 18.03 -3.03 -0.05 -19.04 16 22 N -0.64 -16.67 5.88 -303.21 -1.78 -18.45 16 23 H 0.26 13.86 8.31 -92.71 -0.77 13.09 16 24 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 25 H 0.06 2.14 7.58 -2.39 -0.02 2.13 16 26 H 0.34 11.78 8.99 -89.70 -0.81 10.98 16 27 H 0.34 9.47 9.08 -89.69 -0.81 8.66 16 28 H 0.13 4.32 7.64 -2.91 -0.02 4.30 16 29 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 30 H 0.11 4.38 7.95 -2.91 -0.02 4.36 16 31 H 0.14 3.10 8.14 -2.39 -0.02 3.08 16 32 H 0.13 3.18 8.14 -2.38 -0.02 3.16 16 33 H 0.42 8.59 8.96 -92.71 -0.83 7.75 16 Total: -1.00 -61.68 286.55 0.23 -61.44 By element: Atomic # 1 Polarization: 30.16 SS G_CDS: -1.29 Total: 28.88 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: 2.80 Total: -15.73 kcal Atomic # 7 Polarization: -97.34 SS G_CDS: -3.25 Total: -100.59 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.05 Total: -19.04 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -61.68 0.23 -61.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261019990.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.225 kcal (2) G-P(sol) polarization free energy of solvation -61.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds