Wall clock time and date at job start Mon Mar 30 2020 04:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86801 * 120.00380 * 2 1 4 4 H 1.48493 * 109.47417 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47002 * 300.00245 * 3 2 1 6 6 H 1.48501 * 109.46943 * 59.99542 * 3 2 1 7 7 C 1.37878 * 119.99873 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99822 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00197 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47498 * 179.97438 * 9 7 2 11 11 C 1.40085 * 119.75219 * 269.95936 * 10 9 7 12 12 C 1.38439 * 120.90275 * 48.28263 * 11 10 9 13 13 C 1.38329 * 119.80658 * 181.94019 * 12 11 10 14 14 C 1.38284 * 120.23276 * 359.97438 * 13 12 11 15 15 C 1.38294 * 120.28424 * 359.42267 * 14 13 12 16 16 C 1.38567 * 119.83652 * 0.08017 * 15 14 13 17 17 N 1.39955 * 120.59676 * 181.28606 * 16 15 14 18 18 C 1.46348 * 118.66867 * 107.53437 * 17 16 15 19 19 C 1.52970 * 109.85453 * 42.46505 * 18 17 16 20 20 C 1.35161 * 119.74606 * 90.00215 * 10 9 7 21 21 O 1.21304 * 119.76297 * 4.29277 * 20 10 9 22 22 H 0.97003 * 119.99992 * 0.02562 * 1 2 3 23 23 H 1.09008 * 109.47000 * 60.00217 * 9 7 2 24 24 H 1.08997 * 109.47617 * 300.00460 * 9 7 2 25 25 H 1.08006 * 120.09242 * 1.91962 * 12 11 10 26 26 H 1.08000 * 119.88198 * 179.97438 * 13 12 11 27 27 H 1.08003 * 119.85736 * 179.42578 * 14 13 12 28 28 H 1.08002 * 120.07808 * 180.10125 * 15 14 13 29 29 H 0.97000 * 120.66384 * 287.55868 * 17 16 15 30 30 H 1.08999 * 109.40266 * 162.57642 * 18 17 16 31 31 H 1.08996 * 109.40586 * 282.41868 * 18 17 16 32 32 H 1.08998 * 109.36138 * 163.94610 * 19 18 17 33 33 H 1.09003 * 109.35736 * 283.53524 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2029 -3.6127 0.0015 11 6 2.6530 -4.1422 -1.2148 12 6 3.1090 -3.3135 -2.2257 13 6 3.5105 -3.8578 -3.4324 14 6 3.4583 -5.2252 -3.6312 15 6 3.0157 -6.0603 -2.6216 16 6 2.6214 -5.5239 -1.4064 17 7 2.1962 -6.3562 -0.3647 18 6 3.0763 -6.5414 0.7898 19 6 3.6902 -5.2004 1.1956 20 6 2.6395 -4.1219 1.1749 21 8 2.1821 -3.7068 2.2189 22 1 -0.4850 0.8401 -0.0004 23 1 0.6240 -2.5575 -0.8881 24 1 0.6246 -2.5563 0.8919 25 1 3.1508 -2.2452 -2.0727 26 1 3.8661 -3.2124 -4.2220 27 1 3.7645 -5.6429 -4.5790 28 1 2.9778 -7.1280 -2.7800 29 1 1.3356 -6.8016 -0.4072 30 1 2.5004 -6.9431 1.6235 31 1 3.8724 -7.2392 0.5301 32 1 4.1046 -5.2819 2.2004 33 1 4.4870 -4.9419 0.4982 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261031889.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:52 Heat of formation + Delta-G solvation = -17.363135 kcal Electronic energy + Delta-G solvation = -18002.204916 eV Core-core repulsion = 15219.939030 eV Total energy + Delta-G solvation = -2782.265885 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.76296 -39.49421 -36.85979 -36.48346 -34.69950 -32.26998 -30.84034 -30.26417 -28.33805 -25.66302 -24.43015 -23.24538 -22.25686 -20.56565 -18.84988 -18.11695 -18.06955 -17.41589 -16.80277 -16.64430 -15.99328 -15.43870 -15.11503 -14.94495 -14.61629 -14.37123 -13.86281 -13.71775 -13.40639 -13.33041 -12.88734 -12.72348 -12.56903 -12.48659 -12.14717 -12.06650 -11.78178 -10.92220 -10.72113 -10.38891 -9.83333 -9.28430 -8.64945 -8.27381 -6.44611 0.38894 0.53688 1.32595 1.35015 1.47261 1.71124 2.19496 2.37349 2.76122 2.93508 3.00294 3.63772 4.00220 4.13179 4.20232 4.32829 4.53054 4.61908 4.69081 4.71825 4.84210 4.91786 4.93957 5.07504 5.12175 5.42035 5.51670 5.59389 5.70699 5.84226 5.96977 6.00837 6.50407 6.61187 6.74986 7.08931 7.18472 7.32975 8.79085 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.023447 B = 0.008624 C = 0.006985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.881895 B = 3245.840279 C = 4007.765350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.971 3.029 4 H -0.266 1.266 5 H -0.266 1.266 6 H -0.279 1.279 7 C -0.540 4.540 8 H 0.053 0.947 9 C 0.265 3.735 10 N -0.550 5.550 11 C 0.103 3.897 12 C -0.138 4.138 13 C -0.113 4.113 14 C -0.113 4.113 15 C -0.110 4.110 16 C 0.138 3.862 17 N -0.793 5.793 18 C 0.156 3.844 19 C -0.150 4.150 20 C 0.508 3.492 21 O -0.595 6.595 22 H 0.269 0.731 23 H 0.013 0.987 24 H 0.000 1.000 25 H 0.108 0.892 26 H 0.145 0.855 27 H 0.161 0.839 28 H 0.155 0.845 29 H 0.404 0.596 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.116 0.884 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.204 -14.658 -7.645 18.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.190 4.190 3 Si 0.794 3.206 4 H -0.190 1.190 5 H -0.191 1.191 6 H -0.205 1.205 7 C -0.578 4.578 8 H 0.071 0.929 9 C 0.144 3.856 10 N -0.274 5.274 11 C 0.009 3.991 12 C -0.159 4.159 13 C -0.132 4.132 14 C -0.132 4.132 15 C -0.130 4.130 16 C 0.042 3.958 17 N -0.440 5.440 18 C 0.031 3.969 19 C -0.192 4.192 20 C 0.299 3.701 21 O -0.476 6.476 22 H 0.078 0.922 23 H 0.031 0.969 24 H 0.019 0.981 25 H 0.126 0.874 26 H 0.162 0.838 27 H 0.179 0.821 28 H 0.173 0.827 29 H 0.241 0.759 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.134 0.866 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 8.943 -14.266 -6.989 18.230 hybrid contribution -0.536 1.487 0.462 1.647 sum 8.407 -12.779 -6.527 16.631 Atomic orbital electron populations 1.70064 1.07669 1.28289 1.50545 1.25897 0.95832 1.03163 0.94139 0.85321 0.78736 0.78318 0.78185 1.19017 1.19124 1.20516 1.21577 0.93006 0.91443 1.51762 0.92892 1.18783 0.87691 0.83789 0.95324 1.45845 1.43236 1.33639 1.04660 1.18679 1.00198 0.93195 0.87037 1.21306 0.99848 1.00012 0.94738 1.21294 0.99645 0.96534 0.95682 1.21422 0.99385 0.92394 1.00015 1.21514 0.98368 1.01236 0.91900 1.17687 1.00446 0.86730 0.90926 1.43921 1.22923 1.57209 1.19988 1.21152 0.94756 0.92555 0.88395 1.22248 0.96497 0.94680 1.05733 1.21505 0.83197 0.83122 0.82227 1.90631 1.60429 1.63321 1.33186 0.92228 0.96867 0.98143 0.87420 0.83765 0.82150 0.82721 0.75885 0.89695 0.89047 0.86572 0.89180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.36 13.29 21.45 0.28 -57.07 16 2 C 0.01 0.53 5.46 84.66 0.46 1.00 16 3 Si 0.97 45.72 29.54 68.60 2.03 47.74 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 5 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 6 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 7 C -0.54 -32.24 8.09 25.60 0.21 -32.03 16 8 H 0.05 3.15 7.73 -2.91 -0.02 3.13 16 9 C 0.26 15.37 4.87 85.63 0.42 15.79 16 10 N -0.55 -26.24 2.56 -634.53 -1.62 -27.86 16 11 C 0.10 4.03 5.03 38.18 0.19 4.22 16 12 C -0.14 -5.15 9.47 22.34 0.21 -4.94 16 13 C -0.11 -3.02 10.04 22.30 0.22 -2.80 16 14 C -0.11 -2.37 10.03 22.29 0.22 -2.14 16 15 C -0.11 -2.44 9.98 22.36 0.22 -2.22 16 16 C 0.14 4.13 5.63 38.23 0.22 4.34 16 17 N -0.79 -20.82 5.21 -339.32 -1.77 -22.58 16 18 C 0.16 3.58 7.01 86.40 0.61 4.19 16 19 C -0.15 -4.63 5.46 29.80 0.16 -4.46 16 20 C 0.51 23.28 6.75 87.56 0.59 23.87 16 21 O -0.59 -32.98 16.61 -3.10 -0.05 -33.04 16 22 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 23 H 0.01 0.80 8.04 -2.38 -0.02 0.78 16 24 H 0.00 0.03 7.34 -2.39 -0.02 0.01 16 25 H 0.11 4.69 6.73 -2.91 -0.02 4.67 16 26 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 27 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 28 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 29 H 0.40 9.61 8.96 -92.71 -0.83 8.78 16 30 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.12 3.15 8.13 -2.39 -0.02 3.13 16 33 H 0.09 2.64 7.63 -2.39 -0.02 2.62 16 Total: -1.00 -77.10 279.67 2.90 -74.20 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.29 Total: 13.80 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: 3.73 Total: 4.81 kcal Atomic # 7 Polarization: -104.41 SS G_CDS: -3.10 Total: -107.51 kcal Atomic # 8 Polarization: -32.98 SS G_CDS: -0.05 Total: -33.04 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.74 kcal Total: -77.10 2.90 -74.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261031889.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.837 kcal (2) G-P(sol) polarization free energy of solvation -77.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds