Wall clock time and date at job start Mon Mar 30 2020 04:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99940 * 2 1 4 4 H 1.48496 * 109.47211 * 265.29883 * 3 2 1 5 5 H 1.48504 * 109.46930 * 145.29929 * 3 2 1 6 6 H 1.48498 * 109.47156 * 25.30170 * 3 2 1 7 7 C 1.37873 * 119.99676 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00523 * 356.91744 * 7 2 1 9 9 C 1.50702 * 119.99735 * 176.92107 * 7 2 1 10 10 H 1.09001 * 109.47309 * 5.24207 * 9 7 2 11 11 C 1.53000 * 109.47075 * 245.24357 * 9 7 2 12 12 N 1.46898 * 109.47022 * 65.29447 * 11 9 7 13 13 C 1.50707 * 109.47333 * 125.24453 * 9 7 2 14 14 C 1.38432 * 120.04157 * 59.72019 * 13 9 7 15 15 C 1.38266 * 119.82658 * 179.79667 * 14 13 9 16 16 C 1.37984 * 120.37177 * 0.47090 * 15 14 13 17 17 C 1.39330 * 120.12871 * 359.77219 * 16 15 14 18 18 C 1.37634 * 120.03963 * 240.00025 * 13 9 7 19 19 C 1.51136 * 132.85837 * 359.92941 * 18 13 9 20 20 C 1.51391 * 104.06944 * 180.02562 * 19 18 13 21 21 O 1.21287 * 126.43746 * 179.97438 * 20 19 18 22 22 N 1.34377 * 107.12133 * 0.02562 * 20 19 18 23 23 H 0.97000 * 119.99773 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47235 * 185.29965 * 11 9 7 25 25 H 1.09001 * 109.47255 * 305.29825 * 11 9 7 26 26 H 1.00910 * 110.99938 * 174.20208 * 12 11 9 27 27 H 1.00891 * 111.00433 * 298.16028 * 12 11 9 28 28 H 1.07998 * 120.09065 * 0.02562 * 14 13 9 29 29 H 1.07997 * 119.81454 * 180.22210 * 15 14 13 30 30 H 1.07995 * 119.93351 * 179.74366 * 16 15 14 31 31 H 1.08994 * 110.50854 * 298.69097 * 19 18 13 32 32 H 1.09006 * 110.50454 * 61.39445 * 19 18 13 33 33 H 0.97002 * 123.87116 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5960 1.9890 -1.3953 5 1 3.4935 1.4708 0.7971 6 1 1.4004 2.6793 0.5984 7 6 2.0045 -1.1941 -0.0005 8 1 1.4657 -2.1287 0.0493 9 6 3.5098 -1.1950 -0.0706 10 1 3.8766 -0.1697 -0.0208 11 6 3.9587 -1.8337 -1.3865 12 7 3.5239 -0.9950 -2.5113 13 6 4.0662 -1.9843 1.0864 14 6 3.7334 -3.3194 1.2383 15 6 4.2498 -4.0404 2.2991 16 6 5.0873 -3.4342 3.2128 17 6 5.4226 -2.0895 3.0694 18 6 4.9011 -1.3771 1.9966 19 6 5.4421 0.0290 2.1168 20 6 6.3019 -0.0126 3.3621 21 8 6.9326 0.9100 3.8333 22 7 6.2360 -1.2643 3.8467 23 1 -0.4850 0.8401 0.0004 24 1 5.0453 -1.9202 -1.3963 25 1 3.5146 -2.8248 -1.4794 26 1 3.8884 -1.3443 -3.3850 27 1 2.5179 -0.9240 -2.5418 28 1 3.0752 -3.7976 0.5280 29 1 3.9929 -5.0830 2.4153 30 1 5.4832 -4.0030 4.0411 31 1 6.0447 0.2822 1.2446 32 1 4.6271 0.7425 2.2393 33 1 6.7000 -1.5599 4.6456 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261045420.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:25 Heat of formation + Delta-G solvation = -9.125344 kcal Electronic energy + Delta-G solvation = -17758.454798 eV Core-core repulsion = 14976.546131 eV Total energy + Delta-G solvation = -2781.908668 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.09346 -38.29716 -36.05554 -34.68423 -32.24252 -32.01796 -29.98016 -28.06050 -26.94433 -24.24293 -22.43300 -21.22730 -20.90290 -19.53870 -17.19666 -17.03917 -16.31407 -15.74154 -15.46011 -14.95416 -14.32656 -14.27318 -13.91431 -13.50436 -12.94358 -12.81779 -12.60535 -12.34883 -12.12264 -11.81403 -11.77961 -11.13550 -10.92019 -10.63804 -10.24675 -9.99412 -9.81534 -9.73578 -9.21301 -8.65525 -8.09573 -7.81635 -7.61809 -6.16971 -4.19161 1.59357 1.83732 2.72797 3.22048 3.32263 3.39161 3.43681 4.24196 4.38993 4.46306 4.87141 5.11990 5.24068 5.42535 5.52105 5.67783 5.74797 5.82088 5.93851 6.12533 6.18228 6.30134 6.49160 6.53644 6.69145 6.80334 6.85751 6.99673 7.07343 7.36021 7.47510 7.62210 8.01003 8.15749 8.29328 8.39804 8.85770 9.45103 10.94321 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.019670 B = 0.009611 C = 0.007914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.163677 B = 2912.686116 C = 3537.067551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.079 3.921 3 Si 0.880 3.120 4 H -0.265 1.265 5 H -0.263 1.263 6 H -0.297 1.297 7 C -0.507 4.507 8 H 0.075 0.925 9 C 0.036 3.964 10 H 0.058 0.942 11 C 0.079 3.921 12 N -0.849 5.849 13 C 0.020 3.980 14 C -0.125 4.125 15 C -0.091 4.091 16 C -0.161 4.161 17 C 0.129 3.871 18 C -0.147 4.147 19 C -0.117 4.117 20 C 0.529 3.471 21 O -0.520 6.520 22 N -0.659 5.659 23 H 0.265 0.735 24 H 0.042 0.958 25 H 0.018 0.982 26 H 0.322 0.678 27 H 0.354 0.646 28 H 0.126 0.874 29 H 0.121 0.879 30 H 0.115 0.885 31 H 0.118 0.882 32 H 0.124 0.876 33 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.266 -6.217 2.354 11.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.124 4.124 3 Si 0.708 3.292 4 H -0.190 1.190 5 H -0.189 1.189 6 H -0.224 1.224 7 C -0.544 4.544 8 H 0.093 0.907 9 C 0.017 3.983 10 H 0.076 0.924 11 C -0.052 4.052 12 N -0.379 5.379 13 C 0.019 3.981 14 C -0.144 4.144 15 C -0.110 4.110 16 C -0.182 4.182 17 C 0.033 3.967 18 C -0.149 4.149 19 C -0.156 4.156 20 C 0.318 3.682 21 O -0.396 6.396 22 N -0.302 5.302 23 H 0.075 0.925 24 H 0.060 0.940 25 H 0.036 0.964 26 H 0.132 0.868 27 H 0.168 0.832 28 H 0.144 0.856 29 H 0.139 0.861 30 H 0.133 0.867 31 H 0.136 0.864 32 H 0.142 0.858 33 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 9.802 -4.894 2.898 11.332 hybrid contribution -0.032 -0.230 0.260 0.349 sum 9.770 -5.124 3.158 11.475 Atomic orbital electron populations 1.69898 1.06415 1.27282 1.49563 1.25072 0.94658 0.99098 0.93602 0.86848 0.79659 0.83130 0.79572 1.19006 1.18875 1.22362 1.20812 0.87568 0.94624 1.51382 0.90739 1.18474 0.96962 0.95338 0.87555 0.92420 1.21805 0.96722 0.93846 0.92817 1.58645 1.18149 1.56123 1.04945 1.19760 0.89297 0.93311 0.95758 1.20948 1.00759 0.93900 0.98800 1.20792 0.96496 0.99406 0.94282 1.20082 1.04311 0.91571 1.02261 1.18100 0.94167 0.92096 0.92323 1.19574 1.02932 0.94678 0.97762 1.21132 1.00270 0.97138 0.97065 1.20764 0.80508 0.81211 0.85687 1.90761 1.44465 1.39044 1.65369 1.43682 1.47152 1.11103 1.28299 0.92497 0.93968 0.96360 0.86823 0.83165 0.85568 0.86056 0.86709 0.86430 0.85801 0.75641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.68 13.96 55.43 0.77 -24.91 16 2 C 0.08 2.10 5.47 -17.82 -0.10 2.01 16 3 Si 0.88 20.81 27.17 -169.99 -4.62 16.20 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.26 -5.83 4.81 56.52 0.27 -5.56 16 6 H -0.30 -7.21 7.11 56.52 0.40 -6.81 16 7 C -0.51 -12.72 7.66 -34.44 -0.26 -12.98 16 8 H 0.07 2.04 7.87 -52.49 -0.41 1.63 16 9 C 0.04 0.76 2.13 -92.92 -0.20 0.57 16 10 H 0.06 1.28 3.74 -51.93 -0.19 1.09 16 11 C 0.08 1.49 5.95 -3.82 -0.02 1.46 16 12 N -0.85 -15.65 9.57 -10.37 -0.10 -15.75 16 13 C 0.02 0.39 4.76 -104.77 -0.50 -0.11 16 14 C -0.13 -2.16 8.84 -39.50 -0.35 -2.51 16 15 C -0.09 -1.32 10.02 -39.66 -0.40 -1.72 16 16 C -0.16 -2.27 10.07 -39.27 -0.40 -2.66 16 17 C 0.13 2.04 7.11 -83.69 -0.60 1.44 16 18 C -0.15 -2.65 6.14 -104.37 -0.64 -3.29 16 19 C -0.12 -2.04 6.04 -28.48 -0.17 -2.21 16 20 C 0.53 8.98 8.71 -10.82 -0.09 8.89 16 21 O -0.52 -10.07 18.03 5.55 0.10 -9.97 16 22 N -0.66 -9.56 5.88 -9.70 -0.06 -9.62 16 23 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 24 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 25 H 0.02 0.33 7.61 -51.93 -0.39 -0.06 16 26 H 0.32 4.85 9.08 -39.29 -0.36 4.49 16 27 H 0.35 7.12 8.24 -39.30 -0.32 6.79 16 28 H 0.13 2.16 7.55 -52.49 -0.40 1.76 16 29 H 0.12 1.40 8.06 -52.49 -0.42 0.97 16 30 H 0.11 1.28 8.06 -52.49 -0.42 0.85 16 31 H 0.12 1.89 8.14 -51.93 -0.42 1.47 16 32 H 0.12 2.29 6.58 -51.93 -0.34 1.95 16 33 H 0.41 4.68 8.96 -40.82 -0.37 4.31 16 LS Contribution 276.88 15.07 4.17 4.17 Total: -1.00 -29.54 276.88 -7.20 -36.73 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -3.74 Total: 14.26 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -3.72 Total: -11.12 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: 0.62 Total: -50.28 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.10 Total: -9.97 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.62 Total: 16.20 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.54 -7.20 -36.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261045420.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.606 kcal (2) G-P(sol) polarization free energy of solvation -29.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds