Wall clock time and date at job start Mon Mar 30 2020 04:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99940 * 2 1 4 4 H 1.48496 * 109.47211 * 265.29883 * 3 2 1 5 5 H 1.48504 * 109.46930 * 145.29929 * 3 2 1 6 6 H 1.48498 * 109.47156 * 25.30170 * 3 2 1 7 7 C 1.37873 * 119.99676 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00523 * 356.91744 * 7 2 1 9 9 C 1.50702 * 119.99735 * 176.92107 * 7 2 1 10 10 H 1.09001 * 109.47309 * 5.24207 * 9 7 2 11 11 C 1.53000 * 109.47075 * 245.24357 * 9 7 2 12 12 N 1.46898 * 109.47022 * 65.29447 * 11 9 7 13 13 C 1.50707 * 109.47333 * 125.24453 * 9 7 2 14 14 C 1.38432 * 120.04157 * 59.72019 * 13 9 7 15 15 C 1.38266 * 119.82658 * 179.79667 * 14 13 9 16 16 C 1.37984 * 120.37177 * 0.47090 * 15 14 13 17 17 C 1.39330 * 120.12871 * 359.77219 * 16 15 14 18 18 C 1.37634 * 120.03963 * 240.00025 * 13 9 7 19 19 C 1.51136 * 132.85837 * 359.92941 * 18 13 9 20 20 C 1.51391 * 104.06944 * 180.02562 * 19 18 13 21 21 O 1.21287 * 126.43746 * 179.97438 * 20 19 18 22 22 N 1.34377 * 107.12133 * 0.02562 * 20 19 18 23 23 H 0.97000 * 119.99773 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.47235 * 185.29965 * 11 9 7 25 25 H 1.09001 * 109.47255 * 305.29825 * 11 9 7 26 26 H 1.00910 * 110.99938 * 174.20208 * 12 11 9 27 27 H 1.00891 * 111.00433 * 298.16028 * 12 11 9 28 28 H 1.07998 * 120.09065 * 0.02562 * 14 13 9 29 29 H 1.07997 * 119.81454 * 180.22210 * 15 14 13 30 30 H 1.07995 * 119.93351 * 179.74366 * 16 15 14 31 31 H 1.08994 * 110.50854 * 298.69097 * 19 18 13 32 32 H 1.09006 * 110.50454 * 61.39445 * 19 18 13 33 33 H 0.97002 * 123.87116 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.5960 1.9890 -1.3953 5 1 3.4935 1.4708 0.7971 6 1 1.4004 2.6793 0.5984 7 6 2.0045 -1.1941 -0.0005 8 1 1.4657 -2.1287 0.0493 9 6 3.5098 -1.1950 -0.0706 10 1 3.8766 -0.1697 -0.0208 11 6 3.9587 -1.8337 -1.3865 12 7 3.5239 -0.9950 -2.5113 13 6 4.0662 -1.9843 1.0864 14 6 3.7334 -3.3194 1.2383 15 6 4.2498 -4.0404 2.2991 16 6 5.0873 -3.4342 3.2128 17 6 5.4226 -2.0895 3.0694 18 6 4.9011 -1.3771 1.9966 19 6 5.4421 0.0290 2.1168 20 6 6.3019 -0.0126 3.3621 21 8 6.9326 0.9100 3.8333 22 7 6.2360 -1.2643 3.8467 23 1 -0.4850 0.8401 0.0004 24 1 5.0453 -1.9202 -1.3963 25 1 3.5146 -2.8248 -1.4794 26 1 3.8884 -1.3443 -3.3850 27 1 2.5179 -0.9240 -2.5418 28 1 3.0752 -3.7976 0.5280 29 1 3.9929 -5.0830 2.4153 30 1 5.4832 -4.0030 4.0411 31 1 6.0447 0.2822 1.2446 32 1 4.6271 0.7425 2.2393 33 1 6.7000 -1.5599 4.6456 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261045420.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:25 Heat of formation + Delta-G solvation = -30.912417 kcal Electronic energy + Delta-G solvation = -17759.399557 eV Core-core repulsion = 14976.546131 eV Total energy + Delta-G solvation = -2782.853426 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.38912 -39.66460 -37.53740 -36.08345 -34.14474 -33.40000 -31.41075 -29.42191 -28.42577 -26.01193 -23.78503 -22.56077 -22.19134 -21.08702 -19.00427 -18.47006 -17.66142 -17.07506 -16.77141 -16.42862 -16.17489 -15.70740 -15.31242 -14.85581 -14.59015 -14.32651 -14.06048 -13.87029 -13.46034 -13.36115 -13.22767 -12.75421 -12.61532 -12.11765 -11.74453 -11.59628 -11.37052 -11.28354 -11.02660 -10.66252 -9.46549 -9.29711 -8.88721 -8.22975 -6.25239 0.29330 0.57091 1.37556 1.44608 1.48015 1.50686 2.02056 2.41977 2.94471 3.13614 3.18997 3.56070 3.88515 4.16061 4.26699 4.38558 4.43875 4.53470 4.61979 4.65907 4.79653 4.93402 5.07356 5.18985 5.27235 5.31467 5.56902 5.69100 5.73041 5.81389 5.92364 6.19855 6.36511 6.49915 6.77469 6.93358 6.93890 7.41530 8.91888 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.019670 B = 0.009611 C = 0.007914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.163677 B = 2912.686116 C = 3537.067551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.030 3.970 3 Si 0.925 3.075 4 H -0.263 1.263 5 H -0.243 1.243 6 H -0.308 1.308 7 C -0.487 4.487 8 H 0.042 0.958 9 C 0.037 3.963 10 H 0.048 0.952 11 C 0.085 3.915 12 N -0.855 5.855 13 C -0.008 4.008 14 C -0.138 4.138 15 C -0.082 4.082 16 C -0.143 4.143 17 C 0.126 3.874 18 C -0.165 4.165 19 C -0.121 4.121 20 C 0.534 3.466 21 O -0.547 6.547 22 N -0.641 5.641 23 H 0.262 0.738 24 H 0.062 0.938 25 H 0.019 0.981 26 H 0.341 0.659 27 H 0.342 0.658 28 H 0.119 0.881 29 H 0.158 0.842 30 H 0.156 0.844 31 H 0.127 0.873 32 H 0.109 0.891 33 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.489 -7.725 3.402 14.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.168 4.168 3 Si 0.752 3.248 4 H -0.188 1.188 5 H -0.167 1.167 6 H -0.236 1.236 7 C -0.525 4.525 8 H 0.060 0.940 9 C 0.018 3.982 10 H 0.066 0.934 11 C -0.046 4.046 12 N -0.385 5.385 13 C -0.009 4.009 14 C -0.157 4.157 15 C -0.100 4.100 16 C -0.163 4.163 17 C 0.030 3.970 18 C -0.168 4.168 19 C -0.160 4.160 20 C 0.323 3.677 21 O -0.425 6.425 22 N -0.285 5.285 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.038 0.962 26 H 0.154 0.846 27 H 0.155 0.845 28 H 0.137 0.863 29 H 0.176 0.824 30 H 0.174 0.826 31 H 0.145 0.855 32 H 0.127 0.873 33 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 12.073 -6.445 3.949 14.244 hybrid contribution -0.684 0.064 -0.052 0.689 sum 11.390 -6.380 3.897 13.624 Atomic orbital electron populations 1.70025 1.08004 1.27627 1.52889 1.25680 0.95016 1.01948 0.94154 0.86103 0.79237 0.79654 0.79774 1.18776 1.16699 1.23587 1.20971 0.89869 0.92837 1.48844 0.94016 1.18388 0.94161 0.95666 0.89993 0.93435 1.21701 0.97785 0.93558 0.91559 1.58631 1.17289 1.56458 1.06144 1.19563 0.91436 0.94257 0.95656 1.21035 1.01164 0.93519 1.00027 1.21170 0.95224 1.00878 0.92761 1.20543 1.02503 0.90751 1.02551 1.18238 0.94160 0.92811 0.91754 1.19628 1.03497 0.95147 0.98521 1.21133 1.00109 0.96816 0.97973 1.20584 0.80100 0.81609 0.85435 1.90752 1.45677 1.40047 1.66040 1.43443 1.46499 1.10046 1.28499 0.92901 0.92001 0.96246 0.84611 0.84477 0.86318 0.82438 0.82618 0.85482 0.87303 0.73570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.26 13.96 21.45 0.30 -55.97 16 2 C 0.03 1.63 5.47 84.65 0.46 2.09 16 3 Si 0.93 43.53 27.17 68.60 1.86 45.39 16 4 H -0.26 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.24 -10.47 4.81 99.48 0.48 -9.99 16 6 H -0.31 -14.96 7.11 99.48 0.71 -14.25 16 7 C -0.49 -24.96 7.66 25.60 0.20 -24.77 16 8 H 0.04 2.37 7.87 -2.91 -0.02 2.35 16 9 C 0.04 1.56 2.13 -12.28 -0.03 1.53 16 10 H 0.05 2.08 3.74 -2.39 -0.01 2.07 16 11 C 0.09 3.10 5.95 86.30 0.51 3.61 16 12 N -0.85 -30.77 9.57 -186.72 -1.79 -32.56 16 13 C -0.01 -0.29 4.76 -19.96 -0.09 -0.38 16 14 C -0.14 -4.53 8.84 22.32 0.20 -4.34 16 15 C -0.08 -2.04 10.02 22.22 0.22 -1.82 16 16 C -0.14 -3.32 10.07 22.47 0.23 -3.09 16 17 C 0.13 3.57 7.11 38.35 0.27 3.84 16 18 C -0.17 -5.66 6.14 -19.70 -0.12 -5.78 16 19 C -0.12 -4.06 6.04 29.46 0.18 -3.89 16 20 C 0.53 17.08 8.71 87.94 0.77 17.85 16 21 O -0.55 -20.36 18.03 -3.05 -0.06 -20.41 16 22 N -0.64 -16.55 5.88 -303.21 -1.78 -18.34 16 23 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 24 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.02 0.70 7.61 -2.39 -0.02 0.68 16 26 H 0.34 9.80 9.08 -89.69 -0.81 8.99 16 27 H 0.34 13.82 8.24 -89.70 -0.74 13.08 16 28 H 0.12 3.98 7.55 -2.91 -0.02 3.96 16 29 H 0.16 2.80 8.06 -2.91 -0.02 2.77 16 30 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 31 H 0.13 3.92 8.14 -2.39 -0.02 3.90 16 32 H 0.11 3.97 6.58 -2.38 -0.02 3.95 16 33 H 0.42 8.13 8.96 -92.71 -0.83 7.30 16 Total: -1.00 -65.00 276.88 -0.11 -65.10 By element: Atomic # 1 Polarization: 33.35 SS G_CDS: -1.44 Total: 31.92 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: 2.79 Total: -15.14 kcal Atomic # 7 Polarization: -103.59 SS G_CDS: -3.27 Total: -106.86 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.06 Total: -20.41 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.86 Total: 45.39 kcal Total: -65.00 -0.11 -65.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261045420.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.189 kcal (2) G-P(sol) polarization free energy of solvation -64.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds