Wall clock time and date at job start Mon Mar 30 2020 04:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00035 * 2 1 4 4 H 1.48508 * 109.46894 * 239.99935 * 3 2 1 5 5 H 1.48499 * 109.47113 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47463 * 119.99648 * 3 2 1 7 7 C 1.37869 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00334 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00173 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.46694 * 299.99787 * 9 7 2 11 11 C 1.53007 * 109.46939 * 59.99338 * 9 7 2 12 12 N 1.46902 * 109.46936 * 185.00559 * 11 9 7 13 13 C 1.50699 * 109.47240 * 179.97438 * 9 7 2 14 14 C 1.38431 * 120.04542 * 299.99791 * 13 9 7 15 15 C 1.38254 * 119.83036 * 180.02562 * 14 13 9 16 16 C 1.37989 * 120.37257 * 359.97438 * 15 14 13 17 17 C 1.39319 * 120.12671 * 0.26216 * 16 15 14 18 18 C 1.37638 * 120.04124 * 120.02347 * 13 9 7 19 19 C 1.51136 * 132.85546 * 359.97438 * 18 13 9 20 20 C 1.51393 * 104.06836 * 180.02562 * 19 18 13 21 21 O 1.21290 * 126.43444 * 179.97438 * 20 19 18 22 22 N 1.34369 * 107.12254 * 359.97438 * 20 19 18 23 23 H 0.97006 * 119.99569 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47256 * 305.00101 * 11 9 7 25 25 H 1.08999 * 109.46802 * 65.00295 * 11 9 7 26 26 H 1.00902 * 111.00200 * 56.04474 * 12 11 9 27 27 H 1.00891 * 111.00147 * 180.02562 * 12 11 9 28 28 H 1.08008 * 120.08462 * 359.97438 * 14 13 9 29 29 H 1.07995 * 119.81885 * 180.02562 * 15 14 13 30 30 H 1.08002 * 119.93231 * 179.97438 * 16 15 14 31 31 H 1.09007 * 110.50840 * 298.64655 * 19 18 13 32 32 H 1.08995 * 110.51371 * 61.35590 * 19 18 13 33 33 H 0.96998 * 123.87021 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8904 11 6 0.3718 -2.5804 -1.2490 12 7 -0.4516 -3.7956 -1.1902 13 6 2.2304 -3.6446 0.0005 14 6 3.1362 -3.7820 -1.0372 15 6 4.0323 -4.8348 -1.0330 16 6 4.0294 -5.7494 0.0003 17 6 3.1175 -5.6204 1.0457 18 6 2.2250 -4.5557 1.0321 19 6 1.3872 -4.6873 2.2831 20 6 1.9312 -5.9264 2.9617 21 8 1.5447 -6.4032 4.0079 22 7 2.9225 -6.3987 2.1873 23 1 -0.4850 0.8401 -0.0004 24 1 -0.2757 -1.7048 -1.2953 25 1 1.0038 -2.6123 -2.1365 26 1 -0.9995 -3.8205 -0.3432 27 1 -1.0414 -3.8725 -2.0051 28 1 3.1422 -3.0691 -1.8486 29 1 4.7391 -4.9417 -1.8425 30 1 4.7323 -6.5693 -0.0038 31 1 1.5162 -3.8141 2.9228 32 1 0.3364 -4.8220 2.0266 33 1 3.4408 -7.1915 2.3963 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261045421.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:27 Heat of formation + Delta-G solvation = -10.653716 kcal Electronic energy + Delta-G solvation = -17664.057284 eV Core-core repulsion = 14882.082341 eV Total energy + Delta-G solvation = -2781.974943 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.96039 -38.16550 -35.92056 -34.53405 -32.22829 -31.77052 -29.73901 -27.86536 -26.73559 -23.95432 -22.42279 -21.14529 -20.75262 -19.65116 -17.03214 -16.62468 -16.11839 -15.59176 -15.34005 -14.74062 -14.49303 -14.14636 -13.57906 -13.45634 -12.94269 -12.70567 -12.28026 -12.07727 -11.94275 -11.63304 -11.33453 -11.10739 -11.00198 -10.52957 -10.24756 -10.02334 -9.84383 -9.56993 -9.34341 -8.55864 -7.93330 -7.65252 -7.45377 -6.13874 -4.21980 1.73918 2.01787 2.84569 3.24550 3.29775 3.32576 3.33884 4.29668 4.45956 4.58070 5.03454 5.14894 5.34973 5.55037 5.69923 5.79847 5.87812 5.92639 6.08610 6.30369 6.50193 6.62395 6.69130 6.92604 6.99214 7.08973 7.15459 7.19997 7.44844 7.62999 7.78019 7.86357 8.00882 8.25778 8.28550 8.35728 8.82410 9.43378 10.89857 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.022603 B = 0.007397 C = 0.007067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.459761 B = 3784.244537 C = 3960.908138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.064 3.936 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.511 4.511 8 H 0.061 0.939 9 C 0.080 3.920 10 H 0.036 0.964 11 C 0.064 3.936 12 N -0.858 5.858 13 C 0.040 3.960 14 C -0.126 4.126 15 C -0.094 4.094 16 C -0.164 4.164 17 C 0.125 3.875 18 C -0.140 4.140 19 C -0.109 4.109 20 C 0.528 3.472 21 O -0.524 6.524 22 N -0.660 5.660 23 H 0.263 0.737 24 H 0.068 0.932 25 H 0.045 0.955 26 H 0.328 0.672 27 H 0.320 0.680 28 H 0.125 0.875 29 H 0.118 0.882 30 H 0.112 0.888 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.006 -7.867 -1.732 8.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.722 3.278 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.549 4.549 8 H 0.079 0.921 9 C 0.061 3.939 10 H 0.054 0.946 11 C -0.066 4.066 12 N -0.385 5.385 13 C 0.039 3.961 14 C -0.145 4.145 15 C -0.113 4.113 16 C -0.185 4.185 17 C 0.029 3.971 18 C -0.142 4.142 19 C -0.148 4.148 20 C 0.317 3.683 21 O -0.401 6.401 22 N -0.302 5.302 23 H 0.073 0.927 24 H 0.086 0.914 25 H 0.064 0.936 26 H 0.139 0.861 27 H 0.130 0.870 28 H 0.143 0.857 29 H 0.136 0.864 30 H 0.130 0.870 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 4.251 -8.297 -1.118 9.390 hybrid contribution -0.005 1.161 0.005 1.161 sum 4.246 -7.137 -1.113 8.379 Atomic orbital electron populations 1.69851 1.05917 1.26881 1.50169 1.24966 0.94894 0.99205 0.94727 0.86606 0.79593 0.82770 0.78809 1.20128 1.21291 1.20147 1.21060 0.93105 0.89475 1.51298 0.92099 1.17897 0.91381 0.89648 0.94985 0.94578 1.22044 0.96129 0.90142 0.98295 1.59026 1.29736 1.43705 1.06000 1.19607 0.93923 0.93022 0.89503 1.20960 0.95974 0.98100 0.99429 1.20751 0.98806 0.94542 0.97208 1.20031 1.01035 1.02449 0.95018 1.18095 0.98076 0.92559 0.88363 1.19544 0.99525 0.97186 0.97995 1.20943 1.01477 0.96982 0.95372 1.20815 0.78734 0.85577 0.83128 1.90754 1.62505 1.64934 1.21888 1.43679 1.35918 1.28857 1.21788 0.92750 0.91420 0.93623 0.86099 0.87010 0.85677 0.86376 0.87023 0.86235 0.86331 0.75848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.44 11.29 55.43 0.63 -22.81 16 2 C 0.06 1.63 5.29 -17.82 -0.09 1.54 16 3 Si 0.89 20.11 29.54 -169.99 -5.02 15.09 16 4 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 7 C -0.51 -12.81 8.25 -34.44 -0.28 -13.10 16 8 H 0.06 1.53 7.60 -52.48 -0.40 1.13 16 9 C 0.08 1.80 2.09 -92.92 -0.19 1.60 16 10 H 0.04 0.88 7.32 -51.93 -0.38 0.50 16 11 C 0.06 1.37 5.91 -3.82 -0.02 1.35 16 12 N -0.86 -15.68 9.34 -10.36 -0.10 -15.78 16 13 C 0.04 0.80 4.45 -104.77 -0.47 0.33 16 14 C -0.13 -2.31 8.68 -39.50 -0.34 -2.65 16 15 C -0.09 -1.46 10.02 -39.67 -0.40 -1.86 16 16 C -0.16 -2.44 10.07 -39.27 -0.40 -2.84 16 17 C 0.12 2.04 7.11 -83.69 -0.60 1.44 16 18 C -0.14 -2.57 6.14 -104.37 -0.64 -3.21 16 19 C -0.11 -1.85 6.13 -28.48 -0.17 -2.02 16 20 C 0.53 8.94 8.71 -10.83 -0.09 8.85 16 21 O -0.52 -10.12 18.03 5.55 0.10 -10.02 16 22 N -0.66 -9.77 5.88 -9.70 -0.06 -9.83 16 23 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 24 H 0.07 1.64 5.95 -51.93 -0.31 1.33 16 25 H 0.05 0.98 7.23 -51.93 -0.38 0.61 16 26 H 0.33 5.87 8.99 -39.29 -0.35 5.51 16 27 H 0.32 5.18 9.08 -39.30 -0.36 4.82 16 28 H 0.13 2.31 7.56 -52.48 -0.40 1.91 16 29 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 30 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 31 H 0.12 2.02 8.14 -51.93 -0.42 1.60 16 32 H 0.12 1.92 8.14 -51.93 -0.42 1.49 16 33 H 0.40 4.84 8.96 -40.82 -0.37 4.47 16 LS Contribution 281.66 15.07 4.24 4.24 Total: -1.00 -27.91 281.66 -7.67 -35.58 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -3.76 Total: 14.10 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -3.70 Total: -10.57 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: 0.47 Total: -48.42 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: 0.10 Total: -10.02 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -27.91 -7.67 -35.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261045421.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.926 kcal (2) G-P(sol) polarization free energy of solvation -27.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds