Wall clock time and date at job start Mon Mar 30 2020 04:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00035 * 2 1 4 4 H 1.48508 * 109.46894 * 239.99935 * 3 2 1 5 5 H 1.48499 * 109.47113 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47463 * 119.99648 * 3 2 1 7 7 C 1.37869 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00334 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00173 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.46694 * 299.99787 * 9 7 2 11 11 C 1.53007 * 109.46939 * 59.99338 * 9 7 2 12 12 N 1.46902 * 109.46936 * 185.00559 * 11 9 7 13 13 C 1.50699 * 109.47240 * 179.97438 * 9 7 2 14 14 C 1.38431 * 120.04542 * 299.99791 * 13 9 7 15 15 C 1.38254 * 119.83036 * 180.02562 * 14 13 9 16 16 C 1.37989 * 120.37257 * 359.97438 * 15 14 13 17 17 C 1.39319 * 120.12671 * 0.26216 * 16 15 14 18 18 C 1.37638 * 120.04124 * 120.02347 * 13 9 7 19 19 C 1.51136 * 132.85546 * 359.97438 * 18 13 9 20 20 C 1.51393 * 104.06836 * 180.02562 * 19 18 13 21 21 O 1.21290 * 126.43444 * 179.97438 * 20 19 18 22 22 N 1.34369 * 107.12254 * 359.97438 * 20 19 18 23 23 H 0.97006 * 119.99569 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47256 * 305.00101 * 11 9 7 25 25 H 1.08999 * 109.46802 * 65.00295 * 11 9 7 26 26 H 1.00902 * 111.00200 * 56.04474 * 12 11 9 27 27 H 1.00891 * 111.00147 * 180.02562 * 12 11 9 28 28 H 1.08008 * 120.08462 * 359.97438 * 14 13 9 29 29 H 1.07995 * 119.81885 * 180.02562 * 15 14 13 30 30 H 1.08002 * 119.93231 * 179.97438 * 16 15 14 31 31 H 1.09007 * 110.50840 * 298.64655 * 19 18 13 32 32 H 1.08995 * 110.51371 * 61.35590 * 19 18 13 33 33 H 0.96998 * 123.87021 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6241 -2.5567 0.8904 11 6 0.3718 -2.5804 -1.2490 12 7 -0.4516 -3.7956 -1.1902 13 6 2.2304 -3.6446 0.0005 14 6 3.1362 -3.7820 -1.0372 15 6 4.0323 -4.8348 -1.0330 16 6 4.0294 -5.7494 0.0003 17 6 3.1175 -5.6204 1.0457 18 6 2.2250 -4.5557 1.0321 19 6 1.3872 -4.6873 2.2831 20 6 1.9312 -5.9264 2.9617 21 8 1.5447 -6.4032 4.0079 22 7 2.9225 -6.3987 2.1873 23 1 -0.4850 0.8401 -0.0004 24 1 -0.2757 -1.7048 -1.2953 25 1 1.0038 -2.6123 -2.1365 26 1 -0.9995 -3.8205 -0.3432 27 1 -1.0414 -3.8725 -2.0051 28 1 3.1422 -3.0691 -1.8486 29 1 4.7391 -4.9417 -1.8425 30 1 4.7323 -6.5693 -0.0038 31 1 1.5162 -3.8141 2.9228 32 1 0.3364 -4.8220 2.0266 33 1 3.4408 -7.1915 2.3963 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261045421.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:19:27 Heat of formation + Delta-G solvation = -29.809329 kcal Electronic energy + Delta-G solvation = -17664.887933 eV Core-core repulsion = 14882.082341 eV Total energy + Delta-G solvation = -2782.805593 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.29336 -39.57516 -37.46130 -36.00294 -34.06754 -33.15887 -31.22046 -29.27217 -28.27061 -25.77898 -23.88307 -22.53227 -22.07270 -21.20439 -18.47601 -18.37247 -17.52695 -16.95378 -16.76759 -16.49352 -16.02127 -15.57740 -15.20386 -14.88793 -14.33639 -14.15665 -13.84130 -13.65282 -13.42003 -13.16151 -12.84485 -12.81892 -12.67216 -12.21200 -11.83454 -11.59486 -11.24139 -11.17137 -11.12462 -10.48854 -9.35905 -9.22952 -8.79173 -8.07463 -6.21683 0.38985 0.70185 1.44500 1.45716 1.49653 1.52832 2.09024 2.44508 3.07946 3.19014 3.24798 3.68773 4.07043 4.15308 4.35431 4.51507 4.55132 4.60657 4.75859 4.81246 5.03897 5.11786 5.27741 5.36890 5.52748 5.61733 5.66126 5.78950 5.86143 5.95845 6.13655 6.23599 6.36105 6.58610 6.77055 6.95962 7.00320 7.45819 8.93522 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.022603 B = 0.007397 C = 0.007067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.459761 B = 3784.244537 C = 3960.908138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.020 3.980 3 Si 0.948 3.052 4 H -0.269 1.269 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.084 3.916 10 H 0.009 0.991 11 C 0.078 3.922 12 N -0.847 5.847 13 C 0.015 3.985 14 C -0.143 4.143 15 C -0.085 4.085 16 C -0.149 4.149 17 C 0.123 3.877 18 C -0.159 4.159 19 C -0.110 4.110 20 C 0.534 3.466 21 O -0.550 6.550 22 N -0.642 5.642 23 H 0.260 0.740 24 H 0.037 0.963 25 H 0.041 0.959 26 H 0.331 0.669 27 H 0.334 0.666 28 H 0.116 0.884 29 H 0.155 0.845 30 H 0.153 0.847 31 H 0.113 0.887 32 H 0.121 0.879 33 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.815 -9.330 -2.367 11.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.179 4.179 3 Si 0.774 3.226 4 H -0.194 1.194 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.560 4.560 8 H 0.073 0.927 9 C 0.065 3.935 10 H 0.027 0.973 11 C -0.052 4.052 12 N -0.375 5.375 13 C 0.014 3.986 14 C -0.161 4.161 15 C -0.103 4.103 16 C -0.169 4.169 17 C 0.027 3.973 18 C -0.162 4.162 19 C -0.149 4.149 20 C 0.323 3.677 21 O -0.428 6.428 22 N -0.285 5.285 23 H 0.070 0.930 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.142 0.858 27 H 0.146 0.854 28 H 0.134 0.866 29 H 0.173 0.827 30 H 0.171 0.829 31 H 0.131 0.869 32 H 0.139 0.861 33 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 6.080 -9.785 -1.773 11.656 hybrid contribution -0.536 1.555 0.175 1.654 sum 5.544 -8.230 -1.598 10.051 Atomic orbital electron populations 1.69976 1.06934 1.27191 1.51126 1.25623 0.95584 1.01952 0.94778 0.85760 0.78490 0.79519 0.78812 1.19439 1.21283 1.20129 1.21358 0.93027 0.90948 1.50631 0.92716 1.17692 0.91698 0.90092 0.93992 0.97288 1.21715 0.95745 0.90039 0.97733 1.58920 1.30003 1.41702 1.06869 1.19388 0.94736 0.93115 0.91314 1.21015 0.96857 0.99371 0.98906 1.21111 0.98066 0.92991 0.98163 1.20482 1.00316 1.02765 0.93369 1.18228 0.97983 0.92006 0.89034 1.19610 1.00644 0.97948 0.97980 1.20926 1.01751 0.97080 0.95155 1.20638 0.78980 0.85317 0.82779 1.90744 1.63482 1.65624 1.22995 1.43441 1.35236 1.29028 1.20816 0.93035 0.94482 0.94016 0.85767 0.85427 0.86626 0.82733 0.82935 0.86914 0.86106 0.73801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.41 11.29 21.44 0.24 -49.16 16 2 C 0.02 1.03 5.29 84.65 0.45 1.48 16 3 Si 0.95 41.64 29.54 68.60 2.03 43.67 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 5 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 7 C -0.52 -26.71 8.25 25.60 0.21 -26.49 16 8 H 0.05 2.80 7.60 -2.91 -0.02 2.78 16 9 C 0.08 3.90 2.09 -12.28 -0.03 3.87 16 10 H 0.01 0.46 7.32 -2.38 -0.02 0.44 16 11 C 0.08 3.44 5.91 86.31 0.51 3.95 16 12 N -0.85 -30.99 9.34 -186.70 -1.74 -32.73 16 13 C 0.02 0.60 4.45 -19.96 -0.09 0.51 16 14 C -0.14 -5.05 8.68 22.32 0.19 -4.86 16 15 C -0.09 -2.31 10.02 22.21 0.22 -2.09 16 16 C -0.15 -3.77 10.07 22.47 0.23 -3.54 16 17 C 0.12 3.69 7.11 38.34 0.27 3.97 16 18 C -0.16 -5.73 6.14 -19.70 -0.12 -5.85 16 19 C -0.11 -3.75 6.13 29.46 0.18 -3.57 16 20 C 0.53 17.46 8.71 87.94 0.77 18.23 16 21 O -0.55 -20.78 18.03 -3.06 -0.06 -20.84 16 22 N -0.64 -17.35 5.88 -303.22 -1.78 -19.13 16 23 H 0.26 13.62 8.31 -92.70 -0.77 12.85 16 24 H 0.04 1.86 5.95 -2.39 -0.01 1.85 16 25 H 0.04 1.83 7.23 -2.39 -0.02 1.81 16 26 H 0.33 11.97 8.99 -89.69 -0.81 11.16 16 27 H 0.33 10.64 9.08 -89.70 -0.81 9.83 16 28 H 0.12 4.22 7.56 -2.91 -0.02 4.20 16 29 H 0.16 3.08 8.06 -2.91 -0.02 3.05 16 30 H 0.15 2.67 8.06 -2.91 -0.02 2.65 16 31 H 0.11 3.95 8.14 -2.38 -0.02 3.93 16 32 H 0.12 3.99 8.14 -2.39 -0.02 3.97 16 33 H 0.42 8.64 8.96 -92.71 -0.83 7.81 16 Total: -1.00 -60.33 281.66 0.20 -60.13 By element: Atomic # 1 Polarization: 33.75 SS G_CDS: -1.28 Total: 32.47 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: 2.80 Total: -14.41 kcal Atomic # 7 Polarization: -97.74 SS G_CDS: -3.28 Total: -101.02 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.06 Total: -20.84 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -60.33 0.20 -60.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261045421.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.319 kcal (2) G-P(sol) polarization free energy of solvation -60.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds