Wall clock time and date at job start Mon Mar 30 2020 04:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48501 * 109.47188 * 269.99860 * 3 2 1 5 5 H 1.48501 * 109.47085 * 29.99439 * 3 2 1 6 6 H 1.48498 * 109.47634 * 149.99675 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.09001 * 110.21444 * 304.52115 * 10 9 7 12 12 N 1.46755 * 110.24710 * 66.44914 * 10 9 7 13 13 C 1.34416 * 111.30074 * 101.98732 * 12 10 9 14 14 O 1.21288 * 124.94505 * 180.42911 * 13 12 10 15 15 C 1.51282 * 110.11789 * 0.40603 * 13 12 10 16 16 C 1.54475 * 110.24731 * 182.50311 * 10 9 7 17 17 H 1.08995 * 110.97292 * 24.52942 * 16 10 9 18 18 C 1.50696 * 110.97125 * 148.29357 * 16 10 9 19 19 C 1.38675 * 120.42382 * 239.71836 * 18 16 10 20 20 C 1.38623 * 118.42407 * 179.78541 * 19 18 16 21 21 C 1.38227 * 119.16199 * 0.51009 * 20 19 18 22 22 N 1.31852 * 120.76314 * 359.73156 * 21 20 19 23 23 C 1.31891 * 121.72558 * 359.97438 * 22 21 20 24 24 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 26 26 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 27 27 H 0.97006 * 124.35692 * 282.00413 * 12 10 9 28 28 H 1.08998 * 110.48966 * 134.93086 * 15 13 12 29 29 H 1.08993 * 110.48696 * 257.45030 * 15 13 12 30 30 H 1.08006 * 120.78518 * 0.02562 * 19 18 16 31 31 H 1.08001 * 120.41636 * 180.22499 * 20 19 18 32 32 H 1.08001 * 119.62087 * 179.74664 * 21 20 19 33 33 H 1.07997 * 119.61913 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9305 -3.5680 -0.8527 12 7 2.9931 -3.6963 1.2517 13 6 2.5196 -4.6481 2.0743 14 8 2.9506 -4.8855 3.1829 15 6 1.3705 -5.3798 1.4165 16 6 1.4919 -5.0090 -0.0798 17 1 0.5079 -4.8830 -0.5315 18 6 2.2979 -6.0399 -0.8272 19 6 1.7908 -6.6312 -1.9745 20 6 2.5694 -7.5711 -2.6317 21 6 3.8122 -7.8933 -2.1195 22 7 4.2604 -7.3143 -1.0229 23 6 3.5496 -6.4118 -0.3749 24 1 -0.4850 0.8401 -0.0004 25 1 0.6242 -2.5609 0.8844 26 1 0.6244 -2.5529 -0.8956 27 1 3.7340 -3.1076 1.4651 28 1 1.4756 -6.4561 1.5526 29 1 0.4183 -5.0363 1.8206 30 1 0.8140 -6.3629 -2.3492 31 1 2.2076 -8.0490 -3.5302 32 1 4.4233 -8.6275 -2.6233 33 1 3.9501 -5.9588 0.5199 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261047719.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:41 Heat of formation + Delta-G solvation = -13.281963 kcal Electronic energy + Delta-G solvation = -17459.133243 eV Core-core repulsion = 14677.044331 eV Total energy + Delta-G solvation = -2782.088912 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.78293 -39.30242 -36.40091 -33.30909 -32.73909 -31.79244 -29.62329 -29.47475 -25.86127 -23.86837 -23.52236 -21.64951 -20.25642 -19.91767 -17.32834 -16.79104 -16.42959 -16.14230 -15.31166 -14.85528 -14.55125 -14.41953 -13.96153 -13.30681 -13.27344 -13.03626 -12.56262 -12.47424 -12.19140 -11.79054 -11.54704 -11.28464 -10.99006 -10.66749 -10.47375 -10.00903 -9.78195 -9.45394 -9.37503 -9.30206 -8.87281 -8.50896 -8.29624 -6.14546 -4.17852 1.10288 1.29800 3.08210 3.24250 3.31772 3.34180 3.79064 4.01232 4.33692 4.43368 4.67297 4.75446 4.89325 4.94191 5.01207 5.10765 5.23235 5.31833 5.54453 5.59660 5.83781 5.94768 6.02109 6.08988 6.20244 6.35565 6.52502 6.72107 7.18733 7.40368 7.59753 7.63521 7.81696 7.99444 8.20008 8.79256 8.86003 9.47217 10.96381 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.025668 B = 0.006308 C = 0.005736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.586661 B = 4437.674943 C = 4879.989142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.015 3.985 10 C 0.144 3.856 11 H 0.079 0.921 12 N -0.704 5.704 13 C 0.515 3.485 14 O -0.556 6.556 15 C -0.146 4.146 16 C -0.062 4.062 17 H 0.109 0.891 18 C -0.117 4.117 19 C -0.069 4.069 20 C -0.173 4.173 21 C 0.086 3.914 22 N -0.484 5.484 23 C 0.107 3.893 24 H 0.262 0.738 25 H 0.025 0.975 26 H 0.031 0.969 27 H 0.411 0.589 28 H 0.094 0.906 29 H 0.109 0.891 30 H 0.137 0.863 31 H 0.133 0.867 32 H 0.152 0.848 33 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.837 -12.849 -5.481 14.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.141 4.141 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.023 4.023 10 C 0.039 3.961 11 H 0.097 0.903 12 N -0.357 5.357 13 C 0.301 3.699 14 O -0.436 6.436 15 C -0.186 4.186 16 C -0.081 4.081 17 H 0.127 0.873 18 C -0.119 4.119 19 C -0.095 4.095 20 C -0.193 4.193 21 C -0.070 4.070 22 N -0.193 5.193 23 C -0.050 4.050 24 H 0.072 0.928 25 H 0.043 0.957 26 H 0.049 0.951 27 H 0.249 0.751 28 H 0.112 0.888 29 H 0.127 0.873 30 H 0.155 0.845 31 H 0.151 0.849 32 H 0.169 0.831 33 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 2.642 -13.156 -4.631 14.195 hybrid contribution -0.207 1.600 -0.401 1.662 sum 2.435 -11.555 -5.032 12.837 Atomic orbital electron populations 1.69939 1.06048 1.26887 1.50166 1.24978 0.94848 0.99310 0.95010 0.86584 0.79879 0.83383 0.78117 1.20628 1.21187 1.19855 1.21055 0.92868 0.90651 1.51470 0.92679 1.19524 0.93610 0.90939 0.98240 1.22019 0.94619 0.93999 0.85435 0.90315 1.46273 1.35431 1.35665 1.18346 1.20754 0.83719 0.80767 0.84628 1.90704 1.63901 1.69554 1.19415 1.22397 0.99821 1.01683 0.94724 1.21251 0.99691 0.93077 0.94128 0.87315 1.20831 0.96362 0.98135 0.96604 1.21548 0.99938 0.94313 0.93700 1.22115 0.96202 0.99533 1.01456 1.22742 0.93965 0.97831 0.92511 1.67709 1.35536 1.08166 1.07855 1.22701 0.90769 0.92980 0.98587 0.92816 0.95697 0.95109 0.75078 0.88804 0.87266 0.84497 0.84899 0.83072 0.83190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.20 13.29 55.43 0.74 -24.47 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 7 C -0.52 -13.39 8.90 -34.44 -0.31 -13.70 16 8 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 9 C 0.01 0.33 4.58 -27.88 -0.13 0.20 16 10 C 0.14 2.53 2.73 -67.02 -0.18 2.35 16 11 H 0.08 1.39 7.90 -51.93 -0.41 0.98 16 12 N -0.70 -12.59 5.24 -52.77 -0.28 -12.86 16 13 C 0.52 9.42 6.91 -10.86 -0.08 9.34 16 14 O -0.56 -11.99 18.03 5.55 0.10 -11.89 16 15 C -0.15 -2.15 6.11 -26.74 -0.16 -2.32 16 16 C -0.06 -0.88 2.96 -90.14 -0.27 -1.15 16 17 H 0.11 1.43 7.76 -51.93 -0.40 1.02 16 18 C -0.12 -1.57 4.71 -104.48 -0.49 -2.07 16 19 C -0.07 -0.78 9.83 -39.28 -0.39 -1.17 16 20 C -0.17 -1.77 10.11 -39.44 -0.40 -2.17 16 21 C 0.09 1.00 11.18 -17.55 -0.20 0.80 16 22 N -0.48 -7.06 10.36 -13.25 -0.14 -7.20 16 23 C 0.11 1.57 10.06 -17.55 -0.18 1.40 16 24 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 25 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.41 7.26 8.96 -40.82 -0.37 6.89 16 28 H 0.09 1.25 7.87 -51.93 -0.41 0.84 16 29 H 0.11 1.54 8.14 -51.93 -0.42 1.12 16 30 H 0.14 1.25 8.04 -52.48 -0.42 0.83 16 31 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 32 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.15 2.35 6.10 -52.49 -0.32 2.03 16 LS Contribution 284.54 15.07 4.29 4.29 Total: -1.00 -31.10 284.54 -7.16 -38.26 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -3.98 Total: 5.08 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -2.87 Total: -6.95 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: 0.32 Total: -44.53 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.10 Total: -11.89 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.10 -7.16 -38.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261047719.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.979 kcal (2) G-P(sol) polarization free energy of solvation -31.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds