Wall clock time and date at job start Mon Mar 30 2020 04:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00234 * 2 1 4 4 H 1.48501 * 109.47232 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47347 * 299.99791 * 3 2 1 6 6 H 1.48499 * 109.47194 * 59.99868 * 3 2 1 7 7 C 1.37880 * 119.99621 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00071 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00313 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47363 * 180.02562 * 9 7 2 11 11 H 1.08996 * 110.28812 * 54.25440 * 10 9 7 12 12 N 1.46768 * 110.24615 * 292.27879 * 10 9 7 13 13 C 1.34413 * 111.30373 * 258.01826 * 12 10 9 14 14 O 1.21283 * 124.94417 * 179.58888 * 13 12 10 15 15 C 1.51284 * 110.11677 * 359.59281 * 13 12 10 16 16 C 1.54481 * 110.24770 * 176.23424 * 10 9 7 17 17 H 1.09002 * 110.97119 * 211.73639 * 16 10 9 18 18 C 1.50699 * 110.97015 * 335.46433 * 16 10 9 19 19 C 1.38678 * 120.41877 * 74.87758 * 18 16 10 20 20 C 1.38626 * 118.41946 * 180.02562 * 19 18 16 21 21 C 1.38225 * 119.16372 * 0.02562 * 20 19 18 22 22 N 1.31856 * 120.76477 * 359.97438 * 21 20 19 23 23 C 1.31887 * 121.72177 * 0.02562 * 22 21 20 24 24 H 0.97000 * 119.99715 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47262 * 59.99785 * 9 7 2 26 26 H 1.09002 * 109.47178 * 299.99764 * 9 7 2 27 27 H 0.97000 * 124.34607 * 77.99229 * 12 10 9 28 28 H 1.09003 * 110.48423 * 225.07298 * 15 13 12 29 29 H 1.09001 * 110.48765 * 102.42456 * 15 13 12 30 30 H 1.07997 * 120.78730 * 0.05368 * 19 18 16 31 31 H 1.08007 * 120.42044 * 180.02562 * 20 19 18 32 32 H 1.07997 * 119.61930 * 180.02562 * 21 20 19 33 33 H 1.08003 * 119.61537 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0018 11 1 2.9440 -3.5610 0.8321 12 7 2.9729 -3.7096 -1.2718 13 6 2.4863 -4.6697 -2.0769 14 8 2.8997 -4.9187 -3.1895 15 6 1.3478 -5.3943 -1.3932 16 6 1.4931 -5.0082 0.0970 17 1 2.0845 -5.7482 0.6364 18 6 0.1429 -4.8273 0.7413 19 6 -0.9005 -4.2485 0.0345 20 6 -2.1249 -4.1017 0.6677 21 6 -2.2641 -4.5335 1.9734 22 7 -1.2498 -5.0796 2.6149 23 6 -0.0710 -5.2351 2.0442 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5572 -0.8896 26 1 0.6239 -2.5568 0.8903 27 1 3.7101 -3.1231 -1.5030 28 1 1.4509 -6.4721 -1.5199 29 1 0.3891 -5.0533 -1.7840 30 1 -0.7625 -3.9204 -0.9851 31 1 -2.9596 -3.6555 0.1474 32 1 -3.2148 -4.4231 2.4737 33 1 0.7363 -5.6871 2.6013 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261047720.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:43 Heat of formation + Delta-G solvation = -7.454865 kcal Electronic energy + Delta-G solvation = -17806.962990 eV Core-core repulsion = 15025.126760 eV Total energy + Delta-G solvation = -2781.836230 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.65331 -39.18390 -36.44444 -33.07843 -32.87704 -31.51925 -29.73282 -28.99944 -25.93128 -23.88190 -23.06456 -21.89451 -20.08658 -19.60155 -17.15390 -16.82647 -16.30024 -15.91462 -15.29083 -14.74297 -14.42575 -14.29788 -13.88237 -13.22043 -13.12343 -12.97841 -12.73825 -12.37036 -11.98003 -11.57170 -11.46008 -11.25586 -10.86446 -10.64064 -10.48160 -9.99903 -9.58375 -9.35625 -9.13921 -9.02300 -8.62090 -8.47286 -8.26392 -6.14252 -4.17221 1.44416 1.68311 3.07173 3.22589 3.31251 3.33351 3.95905 4.15558 4.34066 4.59619 4.80277 4.84866 5.03354 5.22306 5.25549 5.28706 5.40279 5.40561 5.61526 5.90254 5.94539 6.00250 6.06250 6.15306 6.50483 6.51624 6.69180 7.03405 7.19611 7.39716 7.58484 7.64171 7.81655 8.20958 8.28489 8.77704 8.86599 9.47546 10.96309 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.015892 B = 0.009880 C = 0.006814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.448759 B = 2833.373501 C = 4108.130268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.523 4.523 8 H 0.054 0.946 9 C 0.015 3.985 10 C 0.138 3.862 11 H 0.082 0.918 12 N -0.703 5.703 13 C 0.517 3.483 14 O -0.559 6.559 15 C -0.150 4.150 16 C -0.058 4.058 17 H 0.094 0.906 18 C -0.109 4.109 19 C -0.047 4.047 20 C -0.164 4.164 21 C 0.089 3.911 22 N -0.490 5.490 23 C 0.097 3.903 24 H 0.261 0.739 25 H 0.024 0.976 26 H 0.034 0.966 27 H 0.410 0.590 28 H 0.096 0.904 29 H 0.105 0.895 30 H 0.136 0.864 31 H 0.131 0.869 32 H 0.149 0.851 33 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.742 -9.532 2.475 10.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.562 4.562 8 H 0.072 0.928 9 C -0.023 4.023 10 C 0.033 3.967 11 H 0.100 0.900 12 N -0.356 5.356 13 C 0.303 3.697 14 O -0.439 6.439 15 C -0.190 4.190 16 C -0.078 4.078 17 H 0.112 0.888 18 C -0.112 4.112 19 C -0.072 4.072 20 C -0.184 4.184 21 C -0.068 4.068 22 N -0.199 5.199 23 C -0.059 4.059 24 H 0.070 0.930 25 H 0.042 0.958 26 H 0.052 0.948 27 H 0.248 0.752 28 H 0.115 0.885 29 H 0.123 0.877 30 H 0.154 0.846 31 H 0.149 0.851 32 H 0.166 0.834 33 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.892 -9.888 2.821 10.455 hybrid contribution 0.775 1.869 -0.908 2.218 sum -1.117 -8.019 1.914 8.319 Atomic orbital electron populations 1.69944 1.05973 1.26647 1.50158 1.24961 0.94842 0.99210 0.95042 0.86566 0.80115 0.83872 0.77628 1.19762 1.21027 1.20989 1.21129 0.92850 0.90799 1.51373 0.92753 1.19694 0.93656 0.90867 0.98072 1.21983 0.94750 0.94804 0.85119 0.90028 1.46246 1.35873 1.35291 1.18167 1.20737 0.83482 0.80716 0.84767 1.90691 1.64450 1.69485 1.19255 1.22485 0.99667 1.01858 0.94988 1.21107 0.93546 0.98425 0.94701 0.88790 1.20391 0.95142 0.99871 0.95761 1.21544 0.91882 0.93072 1.00743 1.22059 0.98599 1.01081 0.96646 1.22613 0.97431 0.94801 0.91938 1.67617 1.00285 1.14296 1.37653 1.22482 0.94560 0.97203 0.91674 0.92960 0.95827 0.94759 0.75155 0.88519 0.87737 0.84645 0.85075 0.83362 0.83275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.99 13.29 55.43 0.74 -24.25 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 7 C -0.52 -13.44 8.93 -34.44 -0.31 -13.74 16 8 H 0.05 1.35 7.74 -52.49 -0.41 0.95 16 9 C 0.01 0.33 3.20 -27.88 -0.09 0.24 16 10 C 0.14 2.43 3.35 -67.01 -0.22 2.20 16 11 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 12 N -0.70 -12.46 5.69 -52.76 -0.30 -12.76 16 13 C 0.52 9.35 8.43 -10.86 -0.09 9.25 16 14 O -0.56 -11.94 18.03 5.55 0.10 -11.84 16 15 C -0.15 -2.17 6.30 -26.74 -0.17 -2.34 16 16 C -0.06 -0.83 3.33 -90.14 -0.30 -1.13 16 17 H 0.09 1.09 8.07 -51.93 -0.42 0.68 16 18 C -0.11 -1.66 3.79 -104.48 -0.40 -2.05 16 19 C -0.05 -0.74 6.79 -39.28 -0.27 -1.01 16 20 C -0.16 -2.45 10.11 -39.44 -0.40 -2.85 16 21 C 0.09 1.31 11.18 -17.55 -0.20 1.11 16 22 N -0.49 -7.80 10.36 -13.25 -0.14 -7.93 16 23 C 0.10 1.44 10.85 -17.55 -0.19 1.25 16 24 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 25 H 0.02 0.57 6.57 -51.93 -0.34 0.23 16 26 H 0.03 0.84 6.39 -51.93 -0.33 0.50 16 27 H 0.41 7.14 8.96 -40.82 -0.37 6.77 16 28 H 0.10 1.19 8.14 -51.93 -0.42 0.76 16 29 H 0.10 1.50 5.77 -51.93 -0.30 1.20 16 30 H 0.14 2.21 5.46 -52.49 -0.29 1.92 16 31 H 0.13 1.69 8.06 -52.48 -0.42 1.27 16 32 H 0.15 1.74 8.06 -52.49 -0.42 1.31 16 33 H 0.15 1.81 8.06 -52.48 -0.42 1.38 16 LS Contribution 277.67 15.07 4.18 4.18 Total: -1.00 -31.20 277.67 -6.86 -38.06 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -3.70 Total: 6.25 kcal Atomic # 6 Polarization: -4.78 SS G_CDS: -2.73 Total: -7.51 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: 0.30 Total: -44.94 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.10 Total: -11.84 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -31.20 -6.86 -38.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261047720.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.606 kcal (2) G-P(sol) polarization free energy of solvation -31.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds