Wall clock time and date at job start Mon Mar 30 2020 04:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00234 * 2 1 4 4 H 1.48501 * 109.47232 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47347 * 299.99791 * 3 2 1 6 6 H 1.48499 * 109.47194 * 59.99868 * 3 2 1 7 7 C 1.37880 * 119.99621 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00071 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00313 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47363 * 180.02562 * 9 7 2 11 11 H 1.08996 * 110.28812 * 54.25440 * 10 9 7 12 12 N 1.46768 * 110.24615 * 292.27879 * 10 9 7 13 13 C 1.34413 * 111.30373 * 258.01826 * 12 10 9 14 14 O 1.21283 * 124.94417 * 179.58888 * 13 12 10 15 15 C 1.51284 * 110.11677 * 359.59281 * 13 12 10 16 16 C 1.54481 * 110.24770 * 176.23424 * 10 9 7 17 17 H 1.09002 * 110.97119 * 211.73639 * 16 10 9 18 18 C 1.50699 * 110.97015 * 335.46433 * 16 10 9 19 19 C 1.38678 * 120.41877 * 74.87758 * 18 16 10 20 20 C 1.38626 * 118.41946 * 180.02562 * 19 18 16 21 21 C 1.38225 * 119.16372 * 0.02562 * 20 19 18 22 22 N 1.31856 * 120.76477 * 359.97438 * 21 20 19 23 23 C 1.31887 * 121.72177 * 0.02562 * 22 21 20 24 24 H 0.97000 * 119.99715 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47262 * 59.99785 * 9 7 2 26 26 H 1.09002 * 109.47178 * 299.99764 * 9 7 2 27 27 H 0.97000 * 124.34607 * 77.99229 * 12 10 9 28 28 H 1.09003 * 110.48423 * 225.07298 * 15 13 12 29 29 H 1.09001 * 110.48765 * 102.42456 * 15 13 12 30 30 H 1.07997 * 120.78730 * 0.05368 * 19 18 16 31 31 H 1.08007 * 120.42044 * 180.02562 * 20 19 18 32 32 H 1.07997 * 119.61930 * 180.02562 * 21 20 19 33 33 H 1.08003 * 119.61537 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0018 11 1 2.9440 -3.5610 0.8321 12 7 2.9729 -3.7096 -1.2718 13 6 2.4863 -4.6697 -2.0769 14 8 2.8997 -4.9187 -3.1895 15 6 1.3478 -5.3943 -1.3932 16 6 1.4931 -5.0082 0.0970 17 1 2.0845 -5.7482 0.6364 18 6 0.1429 -4.8273 0.7413 19 6 -0.9005 -4.2485 0.0345 20 6 -2.1249 -4.1017 0.6677 21 6 -2.2641 -4.5335 1.9734 22 7 -1.2498 -5.0796 2.6149 23 6 -0.0710 -5.2351 2.0442 24 1 -0.4850 0.8401 -0.0004 25 1 0.6246 -2.5572 -0.8896 26 1 0.6239 -2.5568 0.8903 27 1 3.7101 -3.1231 -1.5030 28 1 1.4509 -6.4721 -1.5199 29 1 0.3891 -5.0533 -1.7840 30 1 -0.7625 -3.9204 -0.9851 31 1 -2.9596 -3.6555 0.1474 32 1 -3.2148 -4.4231 2.4737 33 1 0.7363 -5.6871 2.6013 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261047720.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:43 Heat of formation + Delta-G solvation = -28.684868 kcal Electronic energy + Delta-G solvation = -17807.883592 eV Core-core repulsion = 15025.126760 eV Total energy + Delta-G solvation = -2782.756832 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.94352 -40.46200 -37.92264 -34.98029 -34.21011 -32.68697 -31.35504 -30.33896 -27.48408 -25.42062 -24.24123 -23.39781 -21.43599 -20.95764 -18.71392 -18.19238 -17.86812 -17.27108 -16.63943 -16.38370 -16.00162 -15.54695 -15.25195 -14.65637 -14.40087 -14.25281 -14.20400 -13.76866 -13.62517 -13.17353 -12.88612 -12.70319 -12.50294 -12.30593 -12.05733 -11.67624 -11.14305 -10.97198 -10.58188 -10.42507 -10.27173 -9.88882 -9.63962 -8.18685 -6.26202 0.29767 0.49631 1.36422 1.39912 1.48864 1.64577 2.39320 2.57797 2.97669 3.17200 3.35820 3.64667 3.74470 3.85481 4.07980 4.11210 4.21842 4.29743 4.46181 4.66821 4.74564 4.81779 4.86265 4.96049 5.09442 5.34073 5.45278 5.50246 5.57585 5.79018 5.90669 6.02581 6.14703 6.30063 6.88846 7.14126 7.33936 7.41610 8.91609 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.015892 B = 0.009880 C = 0.006814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.448759 B = 2833.373501 C = 4108.130268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.008 3.992 3 Si 0.948 3.052 4 H -0.263 1.263 5 H -0.287 1.287 6 H -0.283 1.283 7 C -0.533 4.533 8 H 0.059 0.941 9 C 0.028 3.972 10 C 0.141 3.859 11 H 0.095 0.905 12 N -0.703 5.703 13 C 0.512 3.488 14 O -0.596 6.596 15 C -0.142 4.142 16 C -0.043 4.043 17 H 0.134 0.866 18 C -0.116 4.116 19 C -0.065 4.065 20 C -0.176 4.176 21 C 0.085 3.915 22 N -0.509 5.509 23 C 0.095 3.905 24 H 0.259 0.741 25 H 0.000 1.000 26 H 0.015 0.985 27 H 0.408 0.592 28 H 0.127 0.873 29 H 0.103 0.897 30 H 0.124 0.876 31 H 0.144 0.856 32 H 0.175 0.825 33 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.050 -10.469 3.441 11.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.191 4.191 3 Si 0.774 3.226 4 H -0.187 1.187 5 H -0.213 1.213 6 H -0.209 1.209 7 C -0.571 4.571 8 H 0.077 0.923 9 C -0.010 4.010 10 C 0.037 3.963 11 H 0.113 0.887 12 N -0.354 5.354 13 C 0.300 3.700 14 O -0.478 6.478 15 C -0.182 4.182 16 C -0.062 4.062 17 H 0.152 0.848 18 C -0.118 4.118 19 C -0.091 4.091 20 C -0.195 4.195 21 C -0.072 4.072 22 N -0.217 5.217 23 C -0.061 4.061 24 H 0.068 0.932 25 H 0.018 0.982 26 H 0.033 0.967 27 H 0.246 0.754 28 H 0.145 0.855 29 H 0.121 0.879 30 H 0.141 0.859 31 H 0.162 0.838 32 H 0.192 0.808 33 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -1.191 -10.827 3.803 11.537 hybrid contribution 0.532 2.187 -1.208 2.555 sum -0.659 -8.640 2.595 9.045 Atomic orbital electron populations 1.70060 1.07286 1.27173 1.51734 1.25734 0.95585 1.02485 0.95271 0.85654 0.79432 0.80229 0.77255 1.18689 1.21346 1.20884 1.21637 0.93396 0.92251 1.49831 0.92276 1.19469 0.93849 0.91763 0.95912 1.21865 0.94161 0.94953 0.85343 0.88719 1.46317 1.35645 1.35140 1.18328 1.21304 0.83821 0.80658 0.84251 1.90668 1.65740 1.70581 1.20850 1.22503 0.97835 1.03219 0.94610 1.21113 0.93132 0.97108 0.94893 0.84829 1.20474 0.95193 1.00067 0.96074 1.21638 0.92994 0.93821 1.00606 1.22294 0.98840 1.01264 0.97138 1.23056 0.98327 0.93975 0.91837 1.67687 1.00948 1.14941 1.38144 1.22961 0.95013 0.96566 0.91584 0.93168 0.98215 0.96710 0.75360 0.85484 0.87932 0.85867 0.83828 0.80822 0.80380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.56 13.29 21.45 0.28 -52.28 16 2 C 0.01 0.42 5.46 84.66 0.46 0.88 16 3 Si 0.95 42.67 29.54 68.60 2.03 44.70 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 7 C -0.53 -27.21 8.93 25.60 0.23 -26.98 16 8 H 0.06 2.89 7.74 -2.91 -0.02 2.87 16 9 C 0.03 1.24 3.20 29.85 0.10 1.33 16 10 C 0.14 4.73 3.35 45.44 0.15 4.88 16 11 H 0.09 2.96 8.14 -2.39 -0.02 2.94 16 12 N -0.70 -24.10 5.69 -439.44 -2.50 -26.59 16 13 C 0.51 17.91 8.43 87.90 0.74 18.65 16 14 O -0.60 -25.16 18.03 -3.04 -0.05 -25.21 16 15 C -0.14 -3.81 6.30 30.59 0.19 -3.62 16 16 C -0.04 -1.11 3.33 -10.48 -0.03 -1.15 16 17 H 0.13 2.46 8.07 -2.39 -0.02 2.45 16 18 C -0.12 -3.30 3.79 -19.77 -0.08 -3.38 16 19 C -0.06 -2.05 6.79 22.47 0.15 -1.89 16 20 C -0.18 -5.17 10.11 22.36 0.23 -4.94 16 21 C 0.08 2.37 11.18 84.69 0.95 3.32 16 22 N -0.51 -15.24 10.36 -195.84 -2.03 -17.27 16 23 C 0.10 2.59 10.85 84.67 0.92 3.50 16 24 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 25 H 0.00 -0.02 6.57 -2.39 -0.02 -0.04 16 26 H 0.01 0.72 6.39 -2.39 -0.02 0.71 16 27 H 0.41 13.90 8.96 -92.71 -0.83 13.07 16 28 H 0.13 2.68 8.14 -2.39 -0.02 2.66 16 29 H 0.10 2.85 5.77 -2.39 -0.01 2.84 16 30 H 0.12 4.12 5.46 -2.91 -0.02 4.10 16 31 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 32 H 0.17 3.77 8.06 -2.91 -0.02 3.74 16 33 H 0.18 3.64 8.06 -2.91 -0.02 3.62 16 Total: -1.00 -66.82 277.67 2.04 -64.77 By element: Atomic # 1 Polarization: 20.97 SS G_CDS: 0.31 Total: 21.28 kcal Atomic # 6 Polarization: -13.40 SS G_CDS: 4.01 Total: -9.40 kcal Atomic # 7 Polarization: -91.90 SS G_CDS: -4.24 Total: -96.14 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.05 Total: -25.21 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -66.82 2.04 -64.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261047720.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.089 kcal (2) G-P(sol) polarization free energy of solvation -66.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds