Wall clock time and date at job start Mon Mar 30 2020 04:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00200 * 2 1 4 4 H 1.48497 * 109.47448 * 239.99944 * 3 2 1 5 5 H 1.48504 * 109.46900 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47004 * 119.99992 * 3 2 1 7 7 C 1.37878 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99882 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99926 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47126 * 180.02562 * 9 7 2 11 11 H 1.09007 * 110.28840 * 305.69789 * 10 9 7 12 12 N 1.46826 * 110.23628 * 67.71521 * 10 9 7 13 13 C 1.34415 * 111.31403 * 102.01233 * 12 10 9 14 14 O 1.21280 * 124.93920 * 180.41292 * 13 12 10 15 15 C 1.51280 * 110.11851 * 0.37865 * 13 12 10 16 16 C 1.54480 * 110.24711 * 183.72108 * 10 9 7 17 17 H 1.08998 * 110.97336 * 148.25653 * 16 10 9 18 18 C 1.50707 * 110.96855 * 24.53653 * 16 10 9 19 19 C 1.38669 * 120.42129 * 106.21065 * 18 16 10 20 20 C 1.38625 * 118.42196 * 180.24332 * 19 18 16 21 21 C 1.38219 * 119.16218 * 359.75315 * 20 19 18 22 22 N 1.31862 * 120.76388 * 359.97438 * 21 20 19 23 23 C 1.31884 * 121.72484 * 0.02562 * 22 21 20 24 24 H 0.96998 * 120.00102 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.46881 * 60.00606 * 9 7 2 26 26 H 1.09002 * 109.47370 * 300.01010 * 9 7 2 27 27 H 0.96992 * 124.33159 * 281.98019 * 12 10 9 28 28 H 1.08997 * 110.48761 * 257.57012 * 15 13 12 29 29 H 1.09002 * 110.60176 * 134.98663 * 15 13 12 30 30 H 1.08001 * 120.79002 * 0.02562 * 19 18 16 31 31 H 1.08000 * 120.42205 * 179.76807 * 20 19 18 32 32 H 1.08007 * 119.62173 * 180.02562 * 21 20 19 33 33 H 1.07993 * 119.61778 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9443 -3.5617 -0.8309 12 7 2.9723 -3.7086 1.2742 13 6 2.4858 -4.6686 2.0794 14 8 2.8986 -4.9168 3.1925 15 6 1.3478 -5.3939 1.3957 16 6 1.4933 -5.0083 -0.0946 17 1 2.0847 -5.7486 -0.6332 18 6 0.1431 -4.8280 -0.7394 19 6 -0.0779 -5.2598 -2.0384 20 6 -1.3341 -5.0686 -2.5925 21 6 -2.3191 -4.4628 -1.8354 22 7 -2.0747 -4.0696 -0.6007 23 6 -0.8919 -4.2353 -0.0414 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6245 -2.5571 0.8896 27 1 3.7095 -3.1221 1.5052 28 1 0.3889 -5.0532 1.7861 29 1 1.4488 -6.4718 1.5224 30 1 0.7109 -5.7307 -2.6063 31 1 -1.5407 -5.3890 -3.6030 32 1 -3.3007 -4.3105 -2.2596 33 1 -0.7290 -3.8999 0.9721 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261047722.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:50 Heat of formation + Delta-G solvation = -5.748760 kcal Electronic energy + Delta-G solvation = -17814.091012 eV Core-core repulsion = 15032.328764 eV Total energy + Delta-G solvation = -2781.762248 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.66172 -39.15733 -36.40343 -33.07711 -32.77488 -31.72545 -29.70581 -28.87294 -25.91354 -23.82734 -23.13399 -21.90616 -20.10677 -19.57189 -17.13924 -16.83324 -16.27319 -15.85976 -15.21140 -14.76655 -14.43760 -14.35522 -13.86505 -13.20486 -13.08019 -12.93534 -12.74676 -12.37689 -12.06346 -11.48455 -11.44003 -11.13457 -10.94315 -10.67327 -10.45916 -9.93625 -9.52288 -9.43061 -9.16359 -9.02764 -8.56007 -8.43769 -8.21598 -6.08381 -4.13134 1.45171 1.64394 3.08978 3.27104 3.32982 3.34068 3.97404 4.17522 4.37217 4.58630 4.78437 4.96800 5.02222 5.17640 5.23831 5.27886 5.35453 5.43497 5.54653 5.82776 5.96340 5.99277 6.13233 6.15262 6.37657 6.53702 6.62654 7.04343 7.21241 7.42633 7.60575 7.65874 7.84904 8.24292 8.39316 8.79485 8.90159 9.51439 11.01389 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.015933 B = 0.009919 C = 0.006837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.893750 B = 2822.092329 C = 4094.188939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.527 4.527 8 H 0.053 0.947 9 C 0.015 3.985 10 C 0.139 3.861 11 H 0.081 0.919 12 N -0.703 5.703 13 C 0.518 3.482 14 O -0.558 6.558 15 C -0.151 4.151 16 C -0.057 4.057 17 H 0.092 0.908 18 C -0.112 4.112 19 C -0.074 4.074 20 C -0.179 4.179 21 C 0.091 3.909 22 N -0.478 5.478 23 C 0.131 3.869 24 H 0.262 0.738 25 H 0.033 0.967 26 H 0.025 0.975 27 H 0.410 0.590 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.130 0.870 31 H 0.129 0.871 32 H 0.149 0.851 33 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.551 -10.956 -5.357 12.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.565 4.565 8 H 0.071 0.929 9 C -0.023 4.023 10 C 0.034 3.966 11 H 0.099 0.901 12 N -0.356 5.356 13 C 0.304 3.696 14 O -0.438 6.438 15 C -0.191 4.191 16 C -0.077 4.077 17 H 0.110 0.890 18 C -0.115 4.115 19 C -0.100 4.100 20 C -0.199 4.199 21 C -0.066 4.066 22 N -0.186 5.186 23 C -0.026 4.026 24 H 0.072 0.928 25 H 0.051 0.949 26 H 0.043 0.957 27 H 0.249 0.751 28 H 0.124 0.876 29 H 0.115 0.885 30 H 0.148 0.852 31 H 0.146 0.854 32 H 0.166 0.834 33 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -1.277 -10.628 -4.355 11.556 hybrid contribution 1.404 1.106 -0.613 1.889 sum 0.127 -9.522 -4.968 10.741 Atomic orbital electron populations 1.69943 1.05898 1.26903 1.49491 1.24974 0.94820 0.99154 0.95060 0.86698 0.79640 0.83331 0.78569 1.20286 1.21262 1.20258 1.21019 0.92703 0.90769 1.52036 0.92877 1.19693 0.93597 0.90887 0.98077 1.21992 0.94759 0.94768 0.85102 0.90089 1.46248 1.35919 1.35305 1.18114 1.20711 0.83435 0.80715 0.84773 1.90691 1.64410 1.69503 1.19184 1.22486 0.99778 1.01923 0.94907 1.21110 0.93433 0.98434 0.94740 0.88976 1.20408 0.95805 0.99956 0.95287 1.21340 0.96923 0.97582 0.94179 1.21991 0.94495 1.02370 1.01066 1.22689 0.99197 0.94338 0.90366 1.67718 1.22792 1.15956 1.12113 1.22748 0.87498 0.92086 1.00269 0.92783 0.94913 0.95704 0.75139 0.87637 0.88462 0.85248 0.85355 0.83412 0.82725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.56 13.29 55.43 0.74 -24.82 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 7 C -0.53 -13.70 8.93 -34.44 -0.31 -14.01 16 8 H 0.05 1.33 7.74 -52.49 -0.41 0.92 16 9 C 0.01 0.34 3.19 -27.88 -0.09 0.25 16 10 C 0.14 2.45 3.36 -66.98 -0.22 2.23 16 11 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 12 N -0.70 -12.56 5.69 -52.72 -0.30 -12.86 16 13 C 0.52 9.45 8.43 -10.86 -0.09 9.36 16 14 O -0.56 -12.01 18.03 5.56 0.10 -11.91 16 15 C -0.15 -2.22 6.29 -26.75 -0.17 -2.39 16 16 C -0.06 -0.83 3.33 -90.14 -0.30 -1.13 16 17 H 0.09 1.08 8.07 -51.93 -0.42 0.66 16 18 C -0.11 -1.72 3.83 -104.48 -0.40 -2.12 16 19 C -0.07 -0.99 9.84 -39.28 -0.39 -1.38 16 20 C -0.18 -2.31 10.11 -39.45 -0.40 -2.71 16 21 C 0.09 1.35 11.18 -17.55 -0.20 1.15 16 22 N -0.48 -8.67 10.36 -13.25 -0.14 -8.81 16 23 C 0.13 2.32 7.82 -17.55 -0.14 2.19 16 24 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 25 H 0.03 0.81 6.37 -51.93 -0.33 0.48 16 26 H 0.02 0.62 6.49 -51.93 -0.34 0.28 16 27 H 0.41 7.18 8.96 -40.82 -0.37 6.82 16 28 H 0.11 1.57 5.79 -51.93 -0.30 1.27 16 29 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.13 1.34 8.06 -52.49 -0.42 0.92 16 31 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 32 H 0.15 1.76 8.06 -52.48 -0.42 1.34 16 33 H 0.16 2.85 5.29 -52.49 -0.28 2.57 16 LS Contribution 277.48 15.07 4.18 4.18 Total: -1.00 -32.00 277.48 -6.92 -38.92 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -3.69 Total: 6.22 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -2.80 Total: -6.95 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: 0.30 Total: -46.49 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.10 Total: -11.91 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -32.00 -6.92 -38.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261047722.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.176 kcal (2) G-P(sol) polarization free energy of solvation -32.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds