Wall clock time and date at job start Mon Mar 30 2020 04:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00200 * 2 1 4 4 H 1.48497 * 109.47448 * 239.99944 * 3 2 1 5 5 H 1.48504 * 109.46900 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47004 * 119.99992 * 3 2 1 7 7 C 1.37878 * 120.00101 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99882 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99926 * 359.97438 * 7 2 1 10 10 C 1.52997 * 109.47126 * 180.02562 * 9 7 2 11 11 H 1.09007 * 110.28840 * 305.69789 * 10 9 7 12 12 N 1.46826 * 110.23628 * 67.71521 * 10 9 7 13 13 C 1.34415 * 111.31403 * 102.01233 * 12 10 9 14 14 O 1.21280 * 124.93920 * 180.41292 * 13 12 10 15 15 C 1.51280 * 110.11851 * 0.37865 * 13 12 10 16 16 C 1.54480 * 110.24711 * 183.72108 * 10 9 7 17 17 H 1.08998 * 110.97336 * 148.25653 * 16 10 9 18 18 C 1.50707 * 110.96855 * 24.53653 * 16 10 9 19 19 C 1.38669 * 120.42129 * 106.21065 * 18 16 10 20 20 C 1.38625 * 118.42196 * 180.24332 * 19 18 16 21 21 C 1.38219 * 119.16218 * 359.75315 * 20 19 18 22 22 N 1.31862 * 120.76388 * 359.97438 * 21 20 19 23 23 C 1.31884 * 121.72484 * 0.02562 * 22 21 20 24 24 H 0.96998 * 120.00102 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.46881 * 60.00606 * 9 7 2 26 26 H 1.09002 * 109.47370 * 300.01010 * 9 7 2 27 27 H 0.96992 * 124.33159 * 281.98019 * 12 10 9 28 28 H 1.08997 * 110.48761 * 257.57012 * 15 13 12 29 29 H 1.09002 * 110.60176 * 134.98663 * 15 13 12 30 30 H 1.08001 * 120.79002 * 0.02562 * 19 18 16 31 31 H 1.08000 * 120.42205 * 179.76807 * 20 19 18 32 32 H 1.08007 * 119.62173 * 180.02562 * 21 20 19 33 33 H 1.07993 * 119.61778 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 1 2.9443 -3.5617 -0.8309 12 7 2.9723 -3.7086 1.2742 13 6 2.4858 -4.6686 2.0794 14 8 2.8986 -4.9168 3.1925 15 6 1.3478 -5.3939 1.3957 16 6 1.4933 -5.0083 -0.0946 17 1 2.0847 -5.7486 -0.6332 18 6 0.1431 -4.8280 -0.7394 19 6 -0.0779 -5.2598 -2.0384 20 6 -1.3341 -5.0686 -2.5925 21 6 -2.3191 -4.4628 -1.8354 22 7 -2.0747 -4.0696 -0.6007 23 6 -0.8919 -4.2353 -0.0414 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8904 26 1 0.6245 -2.5571 0.8896 27 1 3.7095 -3.1221 1.5052 28 1 0.3889 -5.0532 1.7861 29 1 1.4488 -6.4718 1.5224 30 1 0.7109 -5.7307 -2.6063 31 1 -1.5407 -5.3890 -3.6030 32 1 -3.3007 -4.3105 -2.2596 33 1 -0.7290 -3.8999 0.9721 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261047722.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:32:49 Heat of formation + Delta-G solvation = -28.521127 kcal Electronic energy + Delta-G solvation = -17815.078496 eV Core-core repulsion = 15032.328764 eV Total energy + Delta-G solvation = -2782.749732 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.95726 -40.44832 -37.90005 -34.99101 -34.13419 -32.85891 -31.37698 -30.19546 -27.49633 -25.38729 -24.29831 -23.39438 -21.46847 -20.94215 -18.72625 -18.19561 -17.84298 -17.22459 -16.63096 -16.36891 -16.01858 -15.57014 -15.26438 -14.66513 -14.37279 -14.30716 -13.96967 -13.79789 -13.69441 -13.23314 -12.89642 -12.63629 -12.42707 -12.28257 -12.13090 -11.71640 -11.14657 -10.94598 -10.59308 -10.47841 -10.20484 -9.91118 -9.57169 -8.16954 -6.26905 0.30926 0.54896 1.38574 1.39929 1.46766 1.64045 2.39542 2.57706 2.99138 3.17683 3.34806 3.61544 3.78440 3.86523 4.08267 4.15936 4.26721 4.28210 4.47952 4.65765 4.74816 4.80680 4.84524 4.99707 5.11998 5.33143 5.43759 5.47451 5.56377 5.78418 5.94914 6.02393 6.13984 6.29227 6.88975 7.22859 7.33846 7.41470 8.92363 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.015933 B = 0.009919 C = 0.006837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.893750 B = 2822.092329 C = 4094.188939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.006 3.994 3 Si 0.951 3.049 4 H -0.265 1.265 5 H -0.291 1.291 6 H -0.273 1.273 7 C -0.535 4.535 8 H 0.062 0.938 9 C 0.028 3.972 10 C 0.143 3.857 11 H 0.099 0.901 12 N -0.703 5.703 13 C 0.512 3.488 14 O -0.595 6.595 15 C -0.144 4.144 16 C -0.041 4.041 17 H 0.137 0.863 18 C -0.120 4.120 19 C -0.070 4.070 20 C -0.169 4.169 21 C 0.072 3.928 22 N -0.521 5.521 23 C 0.103 3.897 24 H 0.259 0.741 25 H 0.012 0.988 26 H -0.006 1.006 27 H 0.409 0.591 28 H 0.097 0.903 29 H 0.129 0.871 30 H 0.171 0.829 31 H 0.170 0.830 32 H 0.170 0.830 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.733 -12.433 -7.530 14.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.193 4.193 3 Si 0.777 3.223 4 H -0.190 1.190 5 H -0.217 1.217 6 H -0.199 1.199 7 C -0.573 4.573 8 H 0.080 0.920 9 C -0.009 4.009 10 C 0.038 3.962 11 H 0.117 0.883 12 N -0.354 5.354 13 C 0.300 3.700 14 O -0.478 6.478 15 C -0.184 4.184 16 C -0.061 4.061 17 H 0.155 0.845 18 C -0.122 4.122 19 C -0.096 4.096 20 C -0.188 4.188 21 C -0.084 4.084 22 N -0.230 5.230 23 C -0.054 4.054 24 H 0.067 0.933 25 H 0.031 0.969 26 H 0.012 0.988 27 H 0.247 0.753 28 H 0.115 0.885 29 H 0.147 0.853 30 H 0.188 0.812 31 H 0.187 0.813 32 H 0.187 0.813 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.026 -12.108 -6.541 13.762 hybrid contribution 0.949 1.571 0.030 1.836 sum 0.975 -10.537 -6.510 12.424 Atomic orbital electron populations 1.70099 1.07497 1.27297 1.51465 1.25808 0.95509 1.02747 0.95224 0.85721 0.78360 0.79291 0.78963 1.18955 1.21693 1.19881 1.21580 0.93420 0.92143 1.50186 0.91983 1.19457 0.93792 0.92071 0.95617 1.21876 0.94116 0.94821 0.85402 0.88338 1.46317 1.35674 1.35113 1.18319 1.21274 0.83741 0.80705 0.84267 1.90666 1.65705 1.70639 1.20766 1.22502 0.97672 1.03344 0.94872 1.21135 0.93067 0.97121 0.94748 0.84515 1.20477 0.95319 1.00087 0.96315 1.21846 0.98137 0.96377 0.93203 1.22443 0.93646 1.00353 1.02385 1.23213 1.01074 0.94443 0.89660 1.67604 1.23602 1.17608 1.14199 1.22536 0.88774 0.94092 0.99951 0.93255 0.96939 0.98812 0.75311 0.88456 0.85278 0.81175 0.81298 0.81274 0.85383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.00 13.29 21.45 0.28 -54.71 16 2 C 0.01 0.32 5.46 84.66 0.46 0.78 16 3 Si 0.95 43.41 29.54 68.60 2.03 45.44 16 4 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 5 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 7 C -0.54 -27.88 8.93 25.60 0.23 -27.65 16 8 H 0.06 3.04 7.74 -2.91 -0.02 3.02 16 9 C 0.03 1.31 3.19 29.85 0.10 1.41 16 10 C 0.14 4.82 3.36 45.43 0.15 4.97 16 11 H 0.10 3.03 8.14 -2.38 -0.02 3.02 16 12 N -0.70 -24.52 5.69 -439.32 -2.50 -27.02 16 13 C 0.51 18.39 8.43 87.90 0.74 19.13 16 14 O -0.60 -25.62 18.03 -3.03 -0.05 -25.68 16 15 C -0.14 -4.04 6.29 30.59 0.19 -3.85 16 16 C -0.04 -1.08 3.33 -10.48 -0.03 -1.11 16 17 H 0.14 2.43 8.07 -2.39 -0.02 2.41 16 18 C -0.12 -3.46 3.83 -19.77 -0.08 -3.54 16 19 C -0.07 -1.59 9.84 22.47 0.22 -1.37 16 20 C -0.17 -3.78 10.11 22.36 0.23 -3.55 16 21 C 0.07 2.07 11.18 84.68 0.95 3.02 16 22 N -0.52 -19.42 10.36 -195.84 -2.03 -21.45 16 23 C 0.10 3.75 7.82 84.67 0.66 4.41 16 24 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 25 H 0.01 0.63 6.37 -2.38 -0.02 0.61 16 26 H -0.01 -0.33 6.49 -2.39 -0.02 -0.35 16 27 H 0.41 14.08 8.96 -92.71 -0.83 13.25 16 28 H 0.10 2.95 5.79 -2.39 -0.01 2.94 16 29 H 0.13 2.80 8.14 -2.39 -0.02 2.78 16 30 H 0.17 2.47 8.06 -2.91 -0.02 2.44 16 31 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 32 H 0.17 3.82 8.06 -2.91 -0.02 3.80 16 33 H 0.13 5.14 5.29 -2.91 -0.02 5.12 16 Total: -1.00 -72.08 277.48 1.86 -70.23 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 0.31 Total: 20.56 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: 3.82 Total: -7.36 kcal Atomic # 7 Polarization: -98.94 SS G_CDS: -4.24 Total: -103.18 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.05 Total: -25.68 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -72.08 1.86 -70.23 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261047722.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.705 kcal (2) G-P(sol) polarization free energy of solvation -72.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds