Wall clock time and date at job start Mon Mar 30 2020 04:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 120.00421 * 2 1 4 4 H 1.48501 * 109.47414 * 270.00086 * 3 2 1 5 5 H 1.48503 * 109.47004 * 29.99848 * 3 2 1 6 6 H 1.48502 * 109.47704 * 149.99653 * 3 2 1 7 7 C 1.37882 * 119.99738 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99772 * 174.93493 * 7 2 1 9 9 C 1.50701 * 120.00009 * 354.66331 * 7 2 1 10 10 H 1.09001 * 109.46490 * 335.18432 * 9 7 2 11 11 C 1.53000 * 109.47017 * 215.18417 * 9 7 2 12 12 N 1.46900 * 109.47238 * 65.44574 * 11 9 7 13 13 C 1.50700 * 109.46915 * 95.18135 * 9 7 2 14 14 C 1.34241 * 125.03427 * 264.99994 * 13 9 7 15 15 C 1.46494 * 107.02133 * 180.02562 * 14 13 9 16 16 C 1.39679 * 133.93917 * 179.97438 * 15 14 13 17 17 C 1.38040 * 119.60349 * 180.02562 * 16 15 14 18 18 O 1.35981 * 119.86723 * 179.97438 * 17 16 15 19 19 C 1.39273 * 120.26623 * 0.02562 * 17 16 15 20 20 C 1.37675 * 120.62365 * 359.97328 * 19 17 16 21 21 C 1.39104 * 119.99231 * 0.04792 * 20 19 17 22 22 N 1.36807 * 125.02761 * 84.70082 * 13 9 7 23 23 H 0.96992 * 125.07663 * 359.97438 * 22 13 9 24 24 H 0.97007 * 120.00197 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47188 * 185.45206 * 11 9 7 26 26 H 1.09007 * 109.46853 * 305.44815 * 11 9 7 27 27 H 1.00897 * 110.99942 * 174.78640 * 12 11 9 28 28 H 1.00893 * 111.00627 * 298.74744 * 12 11 9 29 29 H 1.08003 * 126.48808 * 0.03768 * 14 13 9 30 30 H 1.07996 * 120.19637 * 0.02562 * 16 15 14 31 31 H 0.96698 * 114.00567 * 89.99552 * 18 17 16 32 32 H 1.08001 * 119.68825 * 180.02562 * 19 17 16 33 33 H 1.07994 * 120.00479 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0812 -1.1960 -0.0820 9 6 1.2558 -2.4963 0.1225 10 1 0.3040 -2.3225 0.6245 11 6 2.0882 -3.4888 0.9368 12 7 2.2242 -2.9989 2.3150 13 6 1.0032 -3.0611 -1.2517 14 6 -0.1211 -2.8831 -1.9632 15 6 0.0552 -3.5981 -3.2296 16 6 -0.7463 -3.7817 -4.3587 17 6 -0.2736 -4.5332 -5.4157 18 8 -1.0496 -4.7159 -6.5173 19 6 0.9947 -5.1060 -5.3580 20 6 1.7932 -4.9315 -4.2501 21 6 1.3350 -4.1780 -3.1744 22 7 1.8880 -3.8262 -1.9610 23 1 2.7710 -4.0856 -1.6548 24 1 -0.4851 0.8401 0.0004 25 1 1.5922 -4.4594 0.9434 26 1 3.0763 -3.5888 0.4875 27 1 2.6969 -3.6762 2.8945 28 1 2.6997 -2.1093 2.3373 29 1 -0.9909 -2.3194 -1.6596 30 1 -1.7301 -3.3385 -4.4044 31 1 -0.9297 -4.0410 -7.1993 32 1 1.3554 -5.6918 -6.1905 33 1 2.7751 -5.3797 -4.2162 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261050945.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:01 Heat of formation + Delta-G solvation = 1.867351 kcal Electronic energy + Delta-G solvation = -17255.049091 eV Core-core repulsion = 14473.617102 eV Total energy + Delta-G solvation = -2781.431989 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.57227 -38.09956 -35.66076 -34.22659 -32.42796 -31.25386 -29.57358 -27.98213 -26.73575 -24.50098 -22.16855 -21.49099 -20.31439 -19.23130 -17.65735 -17.24552 -16.64934 -15.23957 -14.96044 -14.87230 -14.43425 -14.06197 -13.73782 -13.52108 -13.23895 -12.75345 -12.26970 -12.20175 -11.85874 -11.29405 -11.18357 -11.11069 -10.85555 -10.73102 -10.55225 -9.96012 -9.55634 -9.45191 -9.02736 -8.64654 -7.89940 -7.37115 -6.86560 -6.16984 -4.25262 1.64812 1.99558 3.21223 3.29445 3.29556 3.69384 3.89386 4.25788 4.32528 4.67770 5.10199 5.22394 5.42009 5.45137 5.81617 5.86831 5.97565 6.10561 6.12202 6.35147 6.47802 6.57039 6.60763 6.82261 6.90798 7.06896 7.27275 7.41992 7.64634 7.71748 7.96162 7.99272 8.07372 8.08893 8.25404 8.36030 8.83048 9.39998 10.89028 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.024874 B = 0.006600 C = 0.005791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.410053 B = 4241.541381 C = 4833.904852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.077 3.923 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.052 0.948 9 C 0.087 3.913 10 H 0.092 0.908 11 C 0.074 3.926 12 N -0.840 5.840 13 C 0.155 3.845 14 C -0.224 4.224 15 C -0.080 4.080 16 C -0.104 4.104 17 C 0.059 3.941 18 O -0.502 6.502 19 C -0.144 4.144 20 C -0.115 4.115 21 C 0.075 3.925 22 N -0.595 5.595 23 H 0.406 0.594 24 H 0.265 0.735 25 H 0.045 0.955 26 H 0.003 0.997 27 H 0.320 0.680 28 H 0.350 0.650 29 H 0.145 0.855 30 H 0.121 0.879 31 H 0.378 0.622 32 H 0.120 0.880 33 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.207 -6.552 -5.502 9.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.129 4.129 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.555 4.555 8 H 0.071 0.929 9 C 0.067 3.933 10 H 0.110 0.890 11 C -0.058 4.058 12 N -0.369 5.369 13 C 0.046 3.954 14 C -0.247 4.247 15 C -0.086 4.086 16 C -0.123 4.123 17 C 0.014 3.986 18 O -0.311 6.311 19 C -0.164 4.164 20 C -0.136 4.136 21 C -0.032 4.032 22 N -0.198 5.198 23 H 0.242 0.758 24 H 0.075 0.925 25 H 0.064 0.936 26 H 0.021 0.979 27 H 0.130 0.870 28 H 0.164 0.836 29 H 0.162 0.838 30 H 0.139 0.861 31 H 0.231 0.769 32 H 0.138 0.862 33 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.123 -6.915 -5.101 8.851 hybrid contribution 2.130 1.254 -0.579 2.538 sum 4.252 -5.661 -5.680 9.077 Atomic orbital electron populations 1.69910 1.05934 1.27136 1.47373 1.24961 0.94849 0.99266 0.93813 0.86589 0.79867 0.83350 0.78135 1.20732 1.20932 1.19885 1.20795 0.92568 0.89563 1.52620 0.92934 1.17914 0.99395 0.91841 0.84132 0.88988 1.21820 0.97050 0.97514 0.89388 1.58557 1.60148 1.07653 1.10506 1.21790 0.87424 0.89170 0.97027 1.21365 1.00956 1.09277 0.93147 1.19249 0.93398 1.00395 0.95534 1.20667 0.99660 0.99083 0.92917 1.17992 0.90799 1.01398 0.88437 1.84854 1.64426 1.53501 1.28318 1.20746 0.93732 1.03317 0.98561 1.19733 0.99803 1.01696 0.92379 1.18302 0.94692 1.01583 0.88604 1.41988 1.16904 1.46741 1.14195 0.75814 0.92506 0.93603 0.97900 0.87020 0.83583 0.83764 0.86108 0.76871 0.86201 0.86751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.43 12.84 55.43 0.71 -22.72 16 2 C 0.08 1.98 5.45 -17.82 -0.10 1.89 16 3 Si 0.89 20.22 29.54 -169.99 -5.02 15.20 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 7 C -0.52 -12.88 7.43 -34.44 -0.26 -13.14 16 8 H 0.05 1.30 7.82 -52.49 -0.41 0.89 16 9 C 0.09 1.99 2.42 -92.92 -0.22 1.76 16 10 H 0.09 2.41 7.37 -51.93 -0.38 2.03 16 11 C 0.07 1.41 5.84 -3.82 -0.02 1.39 16 12 N -0.84 -15.24 9.58 -10.37 -0.10 -15.34 16 13 C 0.15 3.41 5.79 -81.78 -0.47 2.94 16 14 C -0.22 -5.10 10.94 -37.67 -0.41 -5.51 16 15 C -0.08 -1.66 6.37 -105.14 -0.67 -2.33 16 16 C -0.10 -1.92 10.03 -39.12 -0.39 -2.31 16 17 C 0.06 0.98 6.69 -39.27 -0.26 0.72 16 18 O -0.50 -7.21 13.50 -19.68 -0.27 -7.48 16 19 C -0.14 -2.24 9.95 -39.40 -0.39 -2.63 16 20 C -0.12 -1.86 10.06 -39.47 -0.40 -2.26 16 21 C 0.08 1.44 7.27 -83.91 -0.61 0.83 16 22 N -0.60 -11.38 5.85 -6.93 -0.04 -11.42 16 23 H 0.41 6.68 8.21 -40.82 -0.34 6.35 16 24 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 25 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.00 0.05 7.60 -51.92 -0.39 -0.34 16 27 H 0.32 4.72 9.08 -39.29 -0.36 4.37 16 28 H 0.35 6.58 8.23 -39.30 -0.32 6.25 16 29 H 0.14 3.42 8.06 -52.48 -0.42 3.00 16 30 H 0.12 2.07 8.06 -52.49 -0.42 1.65 16 31 H 0.38 3.57 9.06 45.56 0.41 3.98 16 32 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 33 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 LS Contribution 286.94 15.07 4.32 4.32 Total: -1.00 -28.86 286.94 -7.64 -36.50 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: -3.04 Total: 19.59 kcal Atomic # 6 Polarization: -14.45 SS G_CDS: -4.21 Total: -18.66 kcal Atomic # 7 Polarization: -50.04 SS G_CDS: 0.57 Total: -49.47 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -0.27 Total: -7.48 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -28.86 -7.64 -36.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261050945.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.367 kcal (2) G-P(sol) polarization free energy of solvation -28.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.499 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds