Wall clock time and date at job start Mon Mar 30 2020 04:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86795 * 120.00421 * 2 1 4 4 H 1.48501 * 109.47414 * 270.00086 * 3 2 1 5 5 H 1.48503 * 109.47004 * 29.99848 * 3 2 1 6 6 H 1.48502 * 109.47704 * 149.99653 * 3 2 1 7 7 C 1.37882 * 119.99738 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99772 * 174.93493 * 7 2 1 9 9 C 1.50701 * 120.00009 * 354.66331 * 7 2 1 10 10 H 1.09001 * 109.46490 * 335.18432 * 9 7 2 11 11 C 1.53000 * 109.47017 * 215.18417 * 9 7 2 12 12 N 1.46900 * 109.47238 * 65.44574 * 11 9 7 13 13 C 1.50700 * 109.46915 * 95.18135 * 9 7 2 14 14 C 1.34241 * 125.03427 * 264.99994 * 13 9 7 15 15 C 1.46494 * 107.02133 * 180.02562 * 14 13 9 16 16 C 1.39679 * 133.93917 * 179.97438 * 15 14 13 17 17 C 1.38040 * 119.60349 * 180.02562 * 16 15 14 18 18 O 1.35981 * 119.86723 * 179.97438 * 17 16 15 19 19 C 1.39273 * 120.26623 * 0.02562 * 17 16 15 20 20 C 1.37675 * 120.62365 * 359.97328 * 19 17 16 21 21 C 1.39104 * 119.99231 * 0.04792 * 20 19 17 22 22 N 1.36807 * 125.02761 * 84.70082 * 13 9 7 23 23 H 0.96992 * 125.07663 * 359.97438 * 22 13 9 24 24 H 0.97007 * 120.00197 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47188 * 185.45206 * 11 9 7 26 26 H 1.09007 * 109.46853 * 305.44815 * 11 9 7 27 27 H 1.00897 * 110.99942 * 174.78640 * 12 11 9 28 28 H 1.00893 * 111.00627 * 298.74744 * 12 11 9 29 29 H 1.08003 * 126.48808 * 0.03768 * 14 13 9 30 30 H 1.07996 * 120.19637 * 0.02562 * 16 15 14 31 31 H 0.96698 * 114.00567 * 89.99552 * 18 17 16 32 32 H 1.08001 * 119.68825 * 180.02562 * 19 17 16 33 33 H 1.07994 * 120.00479 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0812 -1.1960 -0.0820 9 6 1.2558 -2.4963 0.1225 10 1 0.3040 -2.3225 0.6245 11 6 2.0882 -3.4888 0.9368 12 7 2.2242 -2.9989 2.3150 13 6 1.0032 -3.0611 -1.2517 14 6 -0.1211 -2.8831 -1.9632 15 6 0.0552 -3.5981 -3.2296 16 6 -0.7463 -3.7817 -4.3587 17 6 -0.2736 -4.5332 -5.4157 18 8 -1.0496 -4.7159 -6.5173 19 6 0.9947 -5.1060 -5.3580 20 6 1.7932 -4.9315 -4.2501 21 6 1.3350 -4.1780 -3.1744 22 7 1.8880 -3.8262 -1.9610 23 1 2.7710 -4.0856 -1.6548 24 1 -0.4851 0.8401 0.0004 25 1 1.5922 -4.4594 0.9434 26 1 3.0763 -3.5888 0.4875 27 1 2.6969 -3.6762 2.8945 28 1 2.6997 -2.1093 2.3373 29 1 -0.9909 -2.3194 -1.6596 30 1 -1.7301 -3.3385 -4.4044 31 1 -0.9297 -4.0410 -7.1993 32 1 1.3554 -5.6918 -6.1905 33 1 2.7751 -5.3797 -4.2162 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261050945.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:01 Heat of formation + Delta-G solvation = -19.744685 kcal Electronic energy + Delta-G solvation = -17255.986259 eV Core-core repulsion = 14473.617102 eV Total energy + Delta-G solvation = -2782.369157 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.06095 -39.40054 -37.18311 -35.65379 -34.25158 -32.71738 -31.19919 -29.43103 -28.30744 -26.30656 -23.59952 -22.90853 -21.85697 -20.88543 -18.99711 -18.76432 -18.38023 -16.75180 -16.62267 -16.19784 -15.96321 -15.54056 -15.26363 -14.98635 -14.64505 -14.43611 -13.82096 -13.66227 -13.47806 -13.06144 -12.91086 -12.52800 -12.50789 -12.41011 -12.03121 -11.44895 -11.25092 -11.16067 -10.62950 -10.49500 -9.36304 -8.80590 -8.44821 -8.09635 -6.24711 0.26144 0.64677 1.40896 1.43264 1.51467 2.05319 2.39869 2.44421 2.89815 3.19543 3.44504 3.87566 3.96132 4.18494 4.38430 4.49148 4.51862 4.61445 4.63351 4.89957 5.04792 5.09909 5.15401 5.24585 5.51913 5.52473 5.63200 5.71537 5.92664 6.05672 6.19323 6.38687 6.49152 6.81458 6.89166 6.98086 6.99924 7.42670 8.93895 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.024874 B = 0.006600 C = 0.005791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.410053 B = 4241.541381 C = 4833.904852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.026 3.974 3 Si 0.951 3.049 4 H -0.287 1.287 5 H -0.286 1.286 6 H -0.260 1.260 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.089 3.911 10 H 0.049 0.951 11 C 0.083 3.917 12 N -0.848 5.848 13 C 0.145 3.855 14 C -0.255 4.255 15 C -0.109 4.109 16 C -0.128 4.128 17 C 0.072 3.928 18 O -0.506 6.506 19 C -0.134 4.134 20 C -0.107 4.107 21 C 0.065 3.935 22 N -0.585 5.585 23 H 0.419 0.581 24 H 0.261 0.739 25 H 0.053 0.947 26 H 0.021 0.979 27 H 0.341 0.659 28 H 0.347 0.653 29 H 0.115 0.885 30 H 0.120 0.880 31 H 0.403 0.597 32 H 0.158 0.842 33 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.384 -8.055 -7.175 12.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.176 4.176 3 Si 0.777 3.223 4 H -0.213 1.213 5 H -0.211 1.211 6 H -0.185 1.185 7 C -0.555 4.555 8 H 0.074 0.926 9 C 0.069 3.931 10 H 0.067 0.933 11 C -0.048 4.048 12 N -0.379 5.379 13 C 0.035 3.965 14 C -0.279 4.279 15 C -0.114 4.114 16 C -0.147 4.147 17 C 0.026 3.974 18 O -0.318 6.318 19 C -0.153 4.153 20 C -0.128 4.128 21 C -0.042 4.042 22 N -0.190 5.190 23 H 0.257 0.743 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.039 0.961 27 H 0.154 0.846 28 H 0.160 0.840 29 H 0.133 0.867 30 H 0.138 0.862 31 H 0.261 0.739 32 H 0.175 0.825 33 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 4.334 -8.437 -6.782 11.661 hybrid contribution 1.384 1.609 -0.210 2.132 sum 5.718 -6.828 -6.992 11.323 Atomic orbital electron populations 1.70060 1.07311 1.27372 1.49280 1.25685 0.95464 1.02336 0.94069 0.85678 0.79160 0.79829 0.77633 1.21318 1.21146 1.18454 1.21049 0.92674 0.90420 1.51312 0.92630 1.17720 0.97753 0.92560 0.85053 0.93309 1.21640 0.97164 0.96561 0.89462 1.58471 1.60862 1.08201 1.10368 1.21430 0.88089 0.90254 0.96728 1.21287 1.00809 1.10500 0.95281 1.19349 0.95135 1.01429 0.95478 1.20811 0.99901 1.00580 0.93378 1.18090 0.91157 0.99760 0.88362 1.84786 1.64210 1.54566 1.28206 1.21185 0.92730 1.02208 0.99197 1.20160 1.01361 1.00248 0.90984 1.18625 0.94143 1.02225 0.89222 1.41761 1.16965 1.46171 1.14060 0.74260 0.92965 0.92831 0.96127 0.84602 0.83978 0.86703 0.86240 0.73937 0.82477 0.83050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.09 12.84 21.45 0.28 -50.82 16 2 C 0.03 1.38 5.45 84.66 0.46 1.85 16 3 Si 0.95 42.07 29.54 68.60 2.03 44.10 16 4 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 5 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 6 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 7 C -0.52 -26.04 7.43 25.60 0.19 -25.85 16 8 H 0.06 2.72 7.82 -2.91 -0.02 2.69 16 9 C 0.09 4.20 2.42 -12.29 -0.03 4.17 16 10 H 0.05 2.71 7.37 -2.39 -0.02 2.69 16 11 C 0.08 3.13 5.84 86.30 0.50 3.64 16 12 N -0.85 -30.17 9.58 -186.71 -1.79 -31.96 16 13 C 0.15 6.58 5.79 40.87 0.24 6.81 16 14 C -0.25 -12.28 10.94 23.51 0.26 -12.02 16 15 C -0.11 -4.56 6.37 -20.20 -0.13 -4.69 16 16 C -0.13 -4.68 10.03 22.57 0.23 -4.46 16 17 C 0.07 2.19 6.69 22.47 0.15 2.34 16 18 O -0.51 -12.85 13.50 -93.34 -1.26 -14.11 16 19 C -0.13 -3.57 9.95 22.39 0.22 -3.35 16 20 C -0.11 -3.04 10.06 22.34 0.22 -2.82 16 21 C 0.06 2.37 7.27 38.97 0.28 2.66 16 22 N -0.59 -21.88 5.85 -175.83 -1.03 -22.91 16 23 H 0.42 12.98 8.21 -92.71 -0.76 12.22 16 24 H 0.26 14.24 8.31 -92.70 -0.77 13.47 16 25 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.02 0.71 7.60 -2.38 -0.02 0.69 16 27 H 0.34 9.53 9.08 -89.70 -0.81 8.71 16 28 H 0.35 12.81 8.23 -89.70 -0.74 12.07 16 29 H 0.11 6.03 8.06 -2.91 -0.02 6.00 16 30 H 0.12 4.23 8.06 -2.91 -0.02 4.21 16 31 H 0.40 6.16 9.06 -74.06 -0.67 5.49 16 32 H 0.16 3.08 8.06 -2.91 -0.02 3.06 16 33 H 0.15 3.20 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -64.23 286.94 -0.98 -65.21 By element: Atomic # 1 Polarization: 44.01 SS G_CDS: -1.81 Total: 42.20 kcal Atomic # 6 Polarization: -34.32 SS G_CDS: 2.60 Total: -31.72 kcal Atomic # 7 Polarization: -103.14 SS G_CDS: -2.54 Total: -105.68 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: -1.26 Total: -14.11 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -64.23 -0.98 -65.21 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261050945.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.468 kcal (2) G-P(sol) polarization free energy of solvation -64.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds