Wall clock time and date at job start Mon Mar 30 2020 04:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99649 * 2 1 4 4 H 1.48503 * 109.47287 * 264.86069 * 3 2 1 5 5 H 1.48499 * 109.46887 * 24.86346 * 3 2 1 6 6 H 1.48500 * 109.46993 * 144.86308 * 3 2 1 7 7 C 1.37879 * 120.00257 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99682 * 4.78508 * 7 2 1 9 9 C 1.50700 * 119.99895 * 184.79115 * 7 2 1 10 10 H 1.09005 * 109.47126 * 335.01495 * 9 7 2 11 11 C 1.52999 * 109.47350 * 95.01826 * 9 7 2 12 12 N 1.46900 * 109.46937 * 185.16484 * 11 9 7 13 13 C 1.50701 * 109.46822 * 215.01836 * 9 7 2 14 14 C 1.34262 * 125.04172 * 275.02272 * 13 9 7 15 15 C 1.46479 * 107.01700 * 180.02562 * 14 13 9 16 16 C 1.39773 * 133.99141 * 179.97438 * 15 14 13 17 17 C 1.36595 * 119.86294 * 180.02562 * 16 15 14 18 18 C 1.38818 * 120.57571 * 0.02562 * 17 16 15 19 19 C 1.38198 * 120.59493 * 0.02562 * 18 17 16 20 20 O 1.35955 * 120.15394 * 180.02562 * 19 18 17 21 21 C 1.39558 * 119.68837 * 359.97438 * 19 18 17 22 22 N 1.36760 * 125.04611 * 94.72076 * 13 9 7 23 23 H 0.96997 * 125.07715 * 359.97438 * 22 13 9 24 24 H 0.96999 * 120.00602 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47461 * 65.15707 * 11 9 7 26 26 H 1.09004 * 109.46711 * 305.15722 * 11 9 7 27 27 H 1.00893 * 111.00080 * 56.04533 * 12 11 9 28 28 H 1.00902 * 110.99551 * 179.97438 * 12 11 9 29 29 H 1.07996 * 126.49389 * 359.97438 * 14 13 9 30 30 H 1.08003 * 120.06530 * 359.97438 * 16 15 14 31 31 H 1.08000 * 119.70901 * 180.02562 * 17 16 15 32 32 H 1.07999 * 119.69888 * 179.97438 * 18 17 16 33 33 H 0.96699 * 114.00307 * 269.97633 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6052 1.9838 -1.3945 5 1 1.3963 2.6815 0.5887 6 1 3.4881 1.4741 0.8058 7 6 2.0046 -1.1940 -0.0005 8 1 1.4674 -2.1277 -0.0790 9 6 3.5076 -1.1963 0.1085 10 1 3.9000 -0.2478 -0.2585 11 6 3.9126 -1.3837 1.5719 12 7 5.3714 -1.2625 1.6957 13 6 4.0694 -2.3252 -0.7168 14 6 4.2038 -3.5937 -0.2978 15 6 4.7866 -4.3521 -1.4072 16 6 5.1561 -5.6888 -1.5810 17 6 5.6893 -6.0980 -2.7702 18 6 5.8690 -5.1969 -3.8108 19 6 5.5121 -3.8701 -3.6618 20 8 5.6915 -2.9954 -4.6870 21 6 4.9658 -3.4326 -2.4544 22 7 4.5126 -2.2109 -2.0055 23 1 4.5119 -1.3915 -2.5246 24 1 -0.4851 0.8400 0.0004 25 1 3.5998 -2.3710 1.9119 26 1 3.4315 -0.6198 2.1827 27 1 5.6934 -0.3803 1.3270 28 1 5.6641 -1.3822 2.6539 29 1 3.9340 -3.9813 0.6734 30 1 5.0211 -6.3965 -0.7765 31 1 5.9735 -7.1315 -2.9020 32 1 6.2922 -5.5356 -4.7449 33 1 6.5537 -2.5576 -4.6843 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261055483.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:57 Heat of formation + Delta-G solvation = -18.452366 kcal Electronic energy + Delta-G solvation = -17432.289966 eV Core-core repulsion = 14649.976848 eV Total energy + Delta-G solvation = -2782.313118 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.17500 -39.15487 -37.35377 -36.43355 -34.48386 -32.03908 -31.59286 -29.63779 -28.76503 -25.68737 -23.93237 -22.77326 -22.35441 -20.50577 -19.38857 -19.20824 -18.11828 -17.05561 -16.72778 -16.38088 -15.84924 -15.53989 -15.27351 -15.10653 -14.74765 -14.63298 -14.22370 -13.81171 -13.29971 -13.10574 -13.00204 -12.50313 -12.42391 -12.17379 -11.94122 -11.73685 -11.57153 -11.43957 -10.82203 -10.29569 -9.47179 -8.94650 -8.39288 -8.33881 -6.44213 0.22905 0.77329 1.29319 1.29392 1.40397 1.98466 2.25730 2.32699 2.95215 2.98290 3.35786 3.89928 3.96839 4.08543 4.22195 4.37695 4.49089 4.63154 4.65656 4.71744 4.98735 5.09756 5.13066 5.17674 5.32577 5.47566 5.54758 5.72476 5.92944 6.09648 6.17299 6.29963 6.35318 6.61591 6.72229 6.78846 6.90493 7.21093 8.79915 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.026718 B = 0.006951 C = 0.006437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.732965 B = 4027.333660 C = 4348.635402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C 0.018 3.982 3 Si 0.943 3.057 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.241 1.241 7 C -0.515 4.515 8 H 0.031 0.969 9 C 0.077 3.923 10 H 0.043 0.957 11 C 0.082 3.918 12 N -0.846 5.846 13 C 0.142 3.858 14 C -0.230 4.230 15 C -0.110 4.110 16 C -0.096 4.096 17 C -0.131 4.131 18 C -0.136 4.136 19 C 0.081 3.919 20 O -0.507 6.507 21 C 0.043 3.957 22 N -0.588 5.588 23 H 0.414 0.586 24 H 0.269 0.731 25 H 0.064 0.936 26 H 0.019 0.981 27 H 0.337 0.663 28 H 0.347 0.653 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.157 0.843 32 H 0.153 0.847 33 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.389 -5.080 -3.193 16.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.180 4.180 3 Si 0.766 3.234 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.164 1.164 7 C -0.554 4.554 8 H 0.049 0.951 9 C 0.056 3.944 10 H 0.061 0.939 11 C -0.049 4.049 12 N -0.376 5.376 13 C 0.033 3.967 14 C -0.254 4.254 15 C -0.115 4.115 16 C -0.114 4.114 17 C -0.150 4.150 18 C -0.156 4.156 19 C 0.034 3.966 20 O -0.319 6.319 21 C -0.064 4.064 22 N -0.191 5.191 23 H 0.251 0.749 24 H 0.078 0.922 25 H 0.083 0.917 26 H 0.037 0.963 27 H 0.149 0.851 28 H 0.160 0.840 29 H 0.154 0.846 30 H 0.154 0.846 31 H 0.175 0.825 32 H 0.171 0.829 33 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 14.669 -5.664 -3.868 16.193 hybrid contribution -0.304 2.278 0.567 2.367 sum 14.365 -3.386 -3.301 15.123 Atomic orbital electron populations 1.70038 1.08323 1.28380 1.51224 1.25955 0.95502 1.02889 0.93703 0.85815 0.79542 0.78489 0.79573 1.19151 1.21190 1.16389 1.20964 0.90117 0.93339 1.50930 0.95069 1.17884 0.93207 0.91480 0.91786 0.93890 1.21836 0.87119 1.00127 0.95844 1.58769 1.11926 1.40723 1.26142 1.20632 0.95027 0.97181 0.83846 1.21248 1.12563 0.92231 0.99384 1.19496 1.03787 0.94390 0.93859 1.20571 0.98934 0.92945 0.98991 1.20797 1.01359 1.00727 0.92100 1.21276 1.02424 0.91080 1.00795 1.17671 1.03960 0.90519 0.84411 1.84823 1.41717 1.58780 1.46559 1.18995 1.04958 0.86529 0.95924 1.41740 1.55141 1.09581 1.12599 0.74912 0.92212 0.91723 0.96282 0.85128 0.84027 0.84641 0.84561 0.82528 0.82903 0.74216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.16 13.96 21.45 0.30 -56.86 16 2 C 0.02 1.00 5.47 84.66 0.46 1.46 16 3 Si 0.94 41.30 26.99 68.60 1.85 43.15 16 4 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 5 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.24 -9.38 6.82 99.48 0.68 -8.70 16 7 C -0.51 -28.46 8.84 25.60 0.23 -28.23 16 8 H 0.03 1.98 8.06 -2.91 -0.02 1.96 16 9 C 0.08 3.40 2.02 -12.29 -0.02 3.38 16 10 H 0.04 1.84 5.30 -2.38 -0.01 1.83 16 11 C 0.08 3.20 5.83 86.30 0.50 3.70 16 12 N -0.85 -26.32 9.34 -186.71 -1.74 -28.07 16 13 C 0.14 6.09 5.75 40.88 0.23 6.32 16 14 C -0.23 -9.57 10.16 23.51 0.24 -9.33 16 15 C -0.11 -4.16 6.37 -20.21 -0.13 -4.29 16 16 C -0.10 -2.89 10.05 22.26 0.22 -2.67 16 17 C -0.13 -3.24 9.97 22.02 0.22 -3.02 16 18 C -0.14 -3.51 9.96 22.40 0.22 -3.29 16 19 C 0.08 2.53 6.72 22.58 0.15 2.68 16 20 O -0.51 -13.72 13.51 -93.04 -1.26 -14.98 16 21 C 0.04 1.61 7.22 39.07 0.28 1.90 16 22 N -0.59 -23.03 6.07 -175.64 -1.07 -24.09 16 23 H 0.41 14.75 8.96 -92.71 -0.83 13.92 16 24 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 25 H 0.06 2.58 6.92 -2.39 -0.02 2.57 16 26 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.34 9.76 8.99 -89.70 -0.81 8.95 16 28 H 0.35 8.81 9.08 -89.69 -0.81 8.00 16 29 H 0.14 5.47 7.14 -2.91 -0.02 5.45 16 30 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 31 H 0.16 2.67 8.06 -2.91 -0.02 2.64 16 32 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 33 H 0.40 6.73 9.06 -74.06 -0.67 6.05 16 Total: -1.00 -69.05 283.40 -1.27 -70.32 By element: Atomic # 1 Polarization: 43.87 SS G_CDS: -1.96 Total: 41.91 kcal Atomic # 6 Polarization: -34.00 SS G_CDS: 2.61 Total: -31.39 kcal Atomic # 7 Polarization: -106.50 SS G_CDS: -2.51 Total: -109.01 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -1.26 Total: -14.98 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 1.85 Total: 43.15 kcal Total: -69.05 -1.27 -70.32 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261055483.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.867 kcal (2) G-P(sol) polarization free energy of solvation -69.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds