Wall clock time and date at job start Mon Mar 30 2020 04:13:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00080 * 2 1 4 4 H 1.48501 * 109.46926 * 90.00046 * 3 2 1 5 5 H 1.48499 * 109.46995 * 330.00100 * 3 2 1 6 6 H 1.48501 * 109.47100 * 210.00280 * 3 2 1 7 7 C 1.37878 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00110 * 177.36964 * 7 2 1 9 9 C 1.50699 * 119.99904 * 357.37408 * 7 2 1 10 10 H 1.08996 * 109.47454 * 326.17579 * 9 7 2 11 11 C 1.53003 * 109.47070 * 206.17446 * 9 7 2 12 12 N 1.46896 * 109.47146 * 65.27820 * 11 9 7 13 13 C 1.50700 * 109.47202 * 86.17613 * 9 7 2 14 14 C 1.38306 * 119.81429 * 59.72387 * 13 9 7 15 15 C 1.38395 * 119.82774 * 179.76986 * 14 13 9 16 16 C 1.37678 * 119.91123 * 0.52551 * 15 14 13 17 17 C 1.38892 * 120.81034 * 359.72600 * 16 15 14 18 18 C 1.37935 * 119.81517 * 240.00087 * 13 9 7 19 19 N 1.39532 * 110.23189 * 179.97438 * 17 16 15 20 20 C 1.34374 * 112.24376 * 359.97438 * 19 17 16 21 21 O 1.21289 * 126.44109 * 179.97438 * 20 19 17 22 22 C 1.51136 * 132.84617 * 179.72516 * 16 15 14 23 23 H 0.97001 * 119.99857 * 174.50327 * 1 2 3 24 24 H 1.09001 * 109.47430 * 185.27937 * 11 9 7 25 25 H 1.09005 * 109.47015 * 305.27951 * 11 9 7 26 26 H 1.00900 * 111.00029 * 62.72902 * 12 11 9 27 27 H 1.00900 * 111.00307 * 186.68694 * 12 11 9 28 28 H 1.08000 * 120.08447 * 0.02562 * 14 13 9 29 29 H 1.07998 * 120.04374 * 180.24881 * 15 14 13 30 30 H 1.07999 * 119.93057 * 359.97438 * 18 13 9 31 31 H 0.96998 * 123.88019 * 179.97438 * 19 17 16 32 32 H 1.09002 * 110.51036 * 298.64433 * 22 16 15 33 33 H 1.08999 * 110.51578 * 61.21661 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 1.4001 5 1 1.4466 2.6526 -0.7000 6 1 3.5468 1.4401 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0837 -1.1946 -0.0435 9 6 1.2522 -2.4985 0.0587 10 1 0.3546 -2.3731 0.6641 11 6 2.1434 -3.5733 0.6844 12 7 2.4191 -3.2264 2.0850 13 6 0.8632 -2.9177 -1.3356 14 6 1.8431 -3.1320 -2.2878 15 6 1.4864 -3.5216 -3.5670 16 6 0.1579 -3.6840 -3.8898 17 6 -0.8358 -3.4668 -2.9440 18 6 -0.4685 -3.0801 -1.6564 19 7 -2.0934 -3.6927 -3.5048 20 6 -2.0167 -4.0560 -4.7962 21 8 -2.9484 -4.3139 -5.5286 22 6 -0.5485 -4.0849 -5.1644 23 1 -0.4850 -0.8362 -0.0805 24 1 1.6353 -4.5367 0.6420 25 1 3.0821 -3.6330 0.1334 26 1 1.5684 -3.2084 2.6272 27 1 3.0920 -3.8605 2.4889 28 1 2.8841 -2.9995 -2.0327 29 1 2.2489 -3.6938 -4.3122 30 1 -1.2280 -2.9070 -0.9084 31 1 -2.9272 -3.5983 -3.0182 32 1 -0.3406 -3.3673 -5.9582 33 1 -0.2477 -5.0874 -5.4688 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261061407.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:53 Heat of formation + Delta-G solvation = -12.245091 kcal Electronic energy + Delta-G solvation = -17410.625447 eV Core-core repulsion = 14628.581497 eV Total energy + Delta-G solvation = -2782.043950 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.04680 -38.32765 -36.30086 -34.38369 -32.56823 -31.76057 -29.18715 -29.08842 -25.96958 -23.85881 -22.37547 -21.50970 -21.04185 -19.77061 -17.50007 -16.83679 -16.06849 -15.79228 -15.47336 -14.57472 -14.45876 -13.95332 -13.82211 -13.69734 -13.35513 -12.90508 -12.77005 -12.28501 -11.98115 -11.56676 -11.36359 -11.22705 -10.75838 -10.42134 -10.28366 -10.12962 -9.99841 -9.71305 -8.82245 -8.40930 -8.06003 -7.82521 -7.48130 -6.33900 -4.03658 1.65560 1.92714 2.72280 3.26918 3.46276 3.48422 3.63995 4.34123 4.38448 4.55418 4.72730 5.16205 5.26194 5.47409 5.49391 5.53779 5.78179 5.93143 5.97911 6.02936 6.11904 6.23917 6.53022 6.55343 6.67796 6.90579 6.99566 7.01289 7.15757 7.53785 7.57478 7.84312 8.10127 8.13659 8.17913 8.45914 8.86240 9.63154 11.03890 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.024005 B = 0.006909 C = 0.006191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.137309 B = 4051.697944 C = 4521.412247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.020 3.980 3 Si 1.068 2.932 4 H -0.288 1.288 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.553 4.553 8 H 0.054 0.946 9 C 0.058 3.942 10 H 0.040 0.960 11 C 0.086 3.914 12 N -0.831 5.831 13 C 0.001 3.999 14 C -0.123 4.123 15 C -0.075 4.075 16 C -0.174 4.174 17 C 0.129 3.871 18 C -0.140 4.140 19 N -0.656 5.656 20 C 0.527 3.473 21 O -0.524 6.524 22 C -0.107 4.107 23 H 0.269 0.731 24 H -0.003 1.003 25 H 0.060 0.940 26 H 0.333 0.667 27 H 0.323 0.677 28 H 0.125 0.875 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.409 0.591 32 H 0.115 0.885 33 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.929 -8.329 -3.867 9.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.184 4.184 3 Si 0.897 3.103 4 H -0.215 1.215 5 H -0.214 1.214 6 H -0.215 1.215 7 C -0.591 4.591 8 H 0.072 0.928 9 C 0.039 3.961 10 H 0.058 0.942 11 C -0.045 4.045 12 N -0.359 5.359 13 C -0.001 4.001 14 C -0.142 4.142 15 C -0.094 4.094 16 C -0.176 4.176 17 C 0.034 3.966 18 C -0.161 4.161 19 N -0.299 5.299 20 C 0.315 3.685 21 O -0.401 6.401 22 C -0.147 4.147 23 H 0.080 0.920 24 H 0.015 0.985 25 H 0.078 0.922 26 H 0.144 0.856 27 H 0.134 0.866 28 H 0.143 0.857 29 H 0.136 0.864 30 H 0.134 0.866 31 H 0.246 0.754 32 H 0.133 0.867 33 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.547 -6.150 -4.604 7.836 hybrid contribution -0.683 -2.368 0.400 2.497 sum 0.863 -8.518 -4.204 9.538 Atomic orbital electron populations 1.70772 1.06898 1.30850 1.46284 1.25758 0.96476 1.02571 0.93631 0.83544 0.74663 0.75312 0.76740 1.21454 1.21440 1.21506 1.21652 0.93965 0.89865 1.53576 0.92791 1.18113 0.96204 0.94640 0.87184 0.94174 1.21730 0.99084 0.94430 0.89233 1.58434 1.16132 1.58116 1.03193 1.20628 0.90842 0.89062 0.99563 1.20895 0.99976 1.01150 0.92136 1.20153 0.93197 0.99351 0.96662 1.19519 0.93695 1.09947 0.94475 1.18124 0.83574 1.00356 0.94584 1.20324 0.97008 1.05532 0.93253 1.43692 1.08167 1.65538 1.12479 1.20662 0.91739 0.74993 0.81085 1.90766 1.44517 1.50059 1.54788 1.20910 0.91442 1.04519 0.97781 0.91995 0.98451 0.92164 0.85554 0.86598 0.85742 0.86399 0.86611 0.75372 0.86743 0.86815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.06 13.58 55.43 0.75 -25.31 16 2 C 0.02 0.53 5.46 -17.82 -0.10 0.44 16 3 Si 1.07 24.74 29.90 -169.99 -5.08 19.66 16 4 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.55 -14.15 7.65 -34.44 -0.26 -14.41 16 8 H 0.05 1.42 7.81 -52.49 -0.41 1.01 16 9 C 0.06 1.29 1.79 -92.92 -0.17 1.12 16 10 H 0.04 0.98 6.63 -51.93 -0.34 0.63 16 11 C 0.09 1.63 5.88 -3.82 -0.02 1.61 16 12 N -0.83 -14.82 9.31 -10.37 -0.10 -14.92 16 13 C 0.00 0.02 4.66 -104.71 -0.49 -0.47 16 14 C -0.12 -2.27 8.87 -39.50 -0.35 -2.62 16 15 C -0.08 -1.20 10.04 -39.73 -0.40 -1.60 16 16 C -0.17 -2.78 6.35 -104.37 -0.66 -3.45 16 17 C 0.13 2.25 7.11 -83.69 -0.60 1.65 16 18 C -0.14 -2.71 9.10 -39.27 -0.36 -3.07 16 19 N -0.66 -10.18 5.88 -9.70 -0.06 -10.24 16 20 C 0.53 8.33 8.71 -10.83 -0.09 8.23 16 21 O -0.52 -9.59 18.03 5.55 0.10 -9.49 16 22 C -0.11 -1.44 6.88 -28.48 -0.20 -1.63 16 23 H 0.27 7.48 6.00 -40.82 -0.24 7.24 16 24 H 0.00 -0.05 8.14 -51.93 -0.42 -0.47 16 25 H 0.06 1.13 7.58 -51.93 -0.39 0.74 16 26 H 0.33 5.67 9.06 -39.29 -0.36 5.31 16 27 H 0.32 4.70 9.08 -39.29 -0.36 4.35 16 28 H 0.12 2.24 7.64 -52.49 -0.40 1.84 16 29 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 30 H 0.12 2.21 7.80 -52.49 -0.41 1.80 16 31 H 0.41 5.57 8.96 -40.82 -0.37 5.21 16 32 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 33 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 283.58 15.07 4.27 4.27 Total: -1.00 -30.59 283.58 -7.57 -38.16 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -3.77 Total: 12.05 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: -3.69 Total: -14.20 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: 0.60 Total: -50.46 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.10 Total: -9.49 kcal Atomic # 14 Polarization: 24.74 SS G_CDS: -5.08 Total: 19.66 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -30.59 -7.57 -38.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261061407.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.918 kcal (2) G-P(sol) polarization free energy of solvation -30.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds