Wall clock time and date at job start Mon Mar 30 2020 04:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86799 * 120.00080 * 2 1 4 4 H 1.48501 * 109.46926 * 90.00046 * 3 2 1 5 5 H 1.48499 * 109.46995 * 330.00100 * 3 2 1 6 6 H 1.48501 * 109.47100 * 210.00280 * 3 2 1 7 7 C 1.37878 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00110 * 177.36964 * 7 2 1 9 9 C 1.50699 * 119.99904 * 357.37408 * 7 2 1 10 10 H 1.08996 * 109.47454 * 326.17579 * 9 7 2 11 11 C 1.53003 * 109.47070 * 206.17446 * 9 7 2 12 12 N 1.46896 * 109.47146 * 65.27820 * 11 9 7 13 13 C 1.50700 * 109.47202 * 86.17613 * 9 7 2 14 14 C 1.38306 * 119.81429 * 59.72387 * 13 9 7 15 15 C 1.38395 * 119.82774 * 179.76986 * 14 13 9 16 16 C 1.37678 * 119.91123 * 0.52551 * 15 14 13 17 17 C 1.38892 * 120.81034 * 359.72600 * 16 15 14 18 18 C 1.37935 * 119.81517 * 240.00087 * 13 9 7 19 19 N 1.39532 * 110.23189 * 179.97438 * 17 16 15 20 20 C 1.34374 * 112.24376 * 359.97438 * 19 17 16 21 21 O 1.21289 * 126.44109 * 179.97438 * 20 19 17 22 22 C 1.51136 * 132.84617 * 179.72516 * 16 15 14 23 23 H 0.97001 * 119.99857 * 174.50327 * 1 2 3 24 24 H 1.09001 * 109.47430 * 185.27937 * 11 9 7 25 25 H 1.09005 * 109.47015 * 305.27951 * 11 9 7 26 26 H 1.00900 * 111.00029 * 62.72902 * 12 11 9 27 27 H 1.00900 * 111.00307 * 186.68694 * 12 11 9 28 28 H 1.08000 * 120.08447 * 0.02562 * 14 13 9 29 29 H 1.07998 * 120.04374 * 180.24881 * 15 14 13 30 30 H 1.07999 * 119.93057 * 359.97438 * 18 13 9 31 31 H 0.96998 * 123.88019 * 179.97438 * 19 17 16 32 32 H 1.09002 * 110.51036 * 298.64433 * 22 16 15 33 33 H 1.08999 * 110.51578 * 61.21661 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 1.4001 5 1 1.4466 2.6526 -0.7000 6 1 3.5468 1.4401 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0837 -1.1946 -0.0435 9 6 1.2522 -2.4985 0.0587 10 1 0.3546 -2.3731 0.6641 11 6 2.1434 -3.5733 0.6844 12 7 2.4191 -3.2264 2.0850 13 6 0.8632 -2.9177 -1.3356 14 6 1.8431 -3.1320 -2.2878 15 6 1.4864 -3.5216 -3.5670 16 6 0.1579 -3.6840 -3.8898 17 6 -0.8358 -3.4668 -2.9440 18 6 -0.4685 -3.0801 -1.6564 19 7 -2.0934 -3.6927 -3.5048 20 6 -2.0167 -4.0560 -4.7962 21 8 -2.9484 -4.3139 -5.5286 22 6 -0.5485 -4.0849 -5.1644 23 1 -0.4850 -0.8362 -0.0805 24 1 1.6353 -4.5367 0.6420 25 1 3.0821 -3.6330 0.1334 26 1 1.5684 -3.2084 2.6272 27 1 3.0920 -3.8605 2.4889 28 1 2.8841 -2.9995 -2.0327 29 1 2.2489 -3.6938 -4.3122 30 1 -1.2280 -2.9070 -0.9084 31 1 -2.9272 -3.5983 -3.0182 32 1 -0.3406 -3.3673 -5.9582 33 1 -0.2477 -5.0874 -5.4688 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261061407.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:52 Heat of formation + Delta-G solvation = -33.924666 kcal Electronic energy + Delta-G solvation = -17411.565544 eV Core-core repulsion = 14628.581497 eV Total energy + Delta-G solvation = -2782.984047 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.34010 -39.73481 -37.79032 -35.83456 -34.33051 -33.16342 -30.68758 -30.44113 -27.49614 -25.70506 -23.77261 -22.95747 -22.31961 -21.28672 -19.09245 -18.37327 -17.49096 -17.01345 -16.92440 -16.08211 -15.94366 -15.59337 -15.39669 -15.15816 -14.74032 -14.35944 -14.10844 -13.59696 -13.39179 -13.17626 -13.05484 -12.76015 -12.49369 -11.92932 -11.88794 -11.67747 -11.44252 -11.27415 -10.63795 -10.41944 -9.50277 -9.29568 -8.87401 -8.41065 -6.10579 0.30133 0.54878 1.44654 1.58444 1.65534 1.81473 2.01935 2.65654 2.95039 3.16691 3.34858 3.52472 3.89380 3.99031 4.30358 4.38642 4.51646 4.53594 4.54774 4.58192 4.71887 4.91541 4.97564 5.16833 5.26357 5.37496 5.56292 5.64933 5.80433 5.95575 6.14764 6.24299 6.41057 6.47468 6.78008 6.86176 6.89832 7.62853 8.97691 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.024005 B = 0.006909 C = 0.006191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.137309 B = 4051.697944 C = 4521.412247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.031 4.031 3 Si 1.105 2.895 4 H -0.282 1.282 5 H -0.295 1.295 6 H -0.271 1.271 7 C -0.546 4.546 8 H 0.045 0.955 9 C 0.058 3.942 10 H 0.008 0.992 11 C 0.094 3.906 12 N -0.844 5.844 13 C -0.022 4.022 14 C -0.135 4.135 15 C -0.062 4.062 16 C -0.165 4.165 17 C 0.122 3.878 18 C -0.157 4.157 19 N -0.654 5.654 20 C 0.524 3.476 21 O -0.551 6.551 22 C -0.096 4.096 23 H 0.261 0.739 24 H 0.012 0.988 25 H 0.064 0.936 26 H 0.335 0.665 27 H 0.343 0.657 28 H 0.126 0.874 29 H 0.160 0.840 30 H 0.102 0.898 31 H 0.414 0.586 32 H 0.140 0.860 33 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.385 -9.279 -5.628 11.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.229 4.229 3 Si 0.930 3.070 4 H -0.208 1.208 5 H -0.222 1.222 6 H -0.196 1.196 7 C -0.584 4.584 8 H 0.063 0.937 9 C 0.039 3.961 10 H 0.026 0.974 11 C -0.037 4.037 12 N -0.374 5.374 13 C -0.024 4.024 14 C -0.154 4.154 15 C -0.080 4.080 16 C -0.168 4.168 17 C 0.026 3.974 18 C -0.178 4.178 19 N -0.296 5.296 20 C 0.314 3.686 21 O -0.430 6.430 22 C -0.135 4.135 23 H 0.072 0.928 24 H 0.030 0.970 25 H 0.082 0.918 26 H 0.147 0.853 27 H 0.156 0.844 28 H 0.144 0.856 29 H 0.177 0.823 30 H 0.120 0.880 31 H 0.252 0.748 32 H 0.158 0.842 33 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.027 -7.125 -6.346 10.010 hybrid contribution -1.153 -2.176 0.942 2.637 sum 1.874 -9.301 -5.404 10.919 Atomic orbital electron populations 1.70850 1.07819 1.30526 1.49411 1.26819 0.96605 1.05656 0.93799 0.83064 0.74391 0.72457 0.77098 1.20792 1.22184 1.19561 1.21860 0.93572 0.91283 1.51718 0.93656 1.18023 0.95048 0.94601 0.88472 0.97357 1.21574 0.98582 0.93922 0.89627 1.58379 1.16923 1.59146 1.02959 1.20399 0.91827 0.91435 0.98768 1.21002 0.99570 1.01789 0.93024 1.20487 0.94132 0.97175 0.96244 1.19912 0.93507 1.08161 0.95234 1.18149 0.84803 1.00248 0.94228 1.20241 0.96553 1.06777 0.94217 1.43750 1.08000 1.65129 1.12756 1.21086 0.92725 0.74177 0.80596 1.90761 1.45665 1.51360 1.55258 1.21014 0.88642 1.07031 0.96791 0.92832 0.96985 0.91795 0.85255 0.84377 0.85563 0.82278 0.88034 0.74841 0.84240 0.83442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -55.79 13.58 21.45 0.29 -55.50 16 2 C -0.03 -1.70 5.46 84.65 0.46 -1.24 16 3 Si 1.10 50.08 29.90 68.60 2.05 52.13 16 4 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 7 C -0.55 -28.22 7.65 25.60 0.20 -28.02 16 8 H 0.05 2.37 7.81 -2.91 -0.02 2.35 16 9 C 0.06 2.62 1.79 -12.29 -0.02 2.60 16 10 H 0.01 0.42 6.63 -2.39 -0.02 0.41 16 11 C 0.09 3.52 5.88 86.31 0.51 4.02 16 12 N -0.84 -29.69 9.31 -186.72 -1.74 -31.43 16 13 C -0.02 -0.92 4.66 -19.92 -0.09 -1.01 16 14 C -0.14 -4.77 8.87 22.32 0.20 -4.58 16 15 C -0.06 -1.76 10.04 22.17 0.22 -1.54 16 16 C -0.17 -4.76 6.35 -19.70 -0.13 -4.89 16 17 C 0.12 4.10 7.11 38.35 0.27 4.37 16 18 C -0.16 -6.16 9.10 22.47 0.20 -5.96 16 19 N -0.65 -19.56 5.88 -303.21 -1.78 -21.34 16 20 C 0.52 15.33 8.71 87.94 0.77 16.09 16 21 O -0.55 -19.17 18.03 -3.06 -0.06 -19.22 16 22 C -0.10 -2.16 6.88 29.46 0.20 -1.96 16 23 H 0.26 15.23 6.00 -92.71 -0.56 14.67 16 24 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 25 H 0.06 2.33 7.58 -2.38 -0.02 2.32 16 26 H 0.34 11.47 9.06 -89.69 -0.81 10.66 16 27 H 0.34 9.55 9.08 -89.69 -0.81 8.74 16 28 H 0.13 4.35 7.64 -2.91 -0.02 4.32 16 29 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 30 H 0.10 4.14 7.80 -2.91 -0.02 4.12 16 31 H 0.41 11.21 8.96 -92.71 -0.83 10.37 16 32 H 0.14 2.59 8.14 -2.39 -0.02 2.57 16 33 H 0.15 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -66.58 283.58 0.48 -66.10 By element: Atomic # 1 Polarization: 32.45 SS G_CDS: -1.08 Total: 31.37 kcal Atomic # 6 Polarization: -24.90 SS G_CDS: 2.79 Total: -22.11 kcal Atomic # 7 Polarization: -105.03 SS G_CDS: -3.23 Total: -108.27 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: -0.06 Total: -19.22 kcal Atomic # 14 Polarization: 50.08 SS G_CDS: 2.05 Total: 52.13 kcal Total: -66.58 0.48 -66.10 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261061407.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.171 kcal (2) G-P(sol) polarization free energy of solvation -66.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds