Wall clock time and date at job start Mon Mar 30 2020 04:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99981 * 2 1 4 4 H 1.48493 * 109.47181 * 264.63994 * 3 2 1 5 5 H 1.48501 * 109.46886 * 24.63834 * 3 2 1 6 6 H 1.48500 * 109.46952 * 144.63580 * 3 2 1 7 7 C 1.37878 * 120.00429 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99553 * 4.63088 * 7 2 1 9 9 C 1.50695 * 120.00658 * 184.62623 * 7 2 1 10 10 H 1.09003 * 109.46599 * 354.80451 * 9 7 2 11 11 C 1.53000 * 109.47246 * 234.80847 * 9 7 2 12 12 N 1.46900 * 109.47350 * 65.36029 * 11 9 7 13 13 C 1.50693 * 109.47188 * 114.80265 * 9 7 2 14 14 C 1.34196 * 125.04077 * 85.21909 * 13 9 7 15 15 C 1.46559 * 107.00773 * 180.24627 * 14 13 9 16 16 C 1.39650 * 133.93443 * 179.70632 * 15 14 13 17 17 C 1.36567 * 119.83916 * 180.02562 * 16 15 14 18 18 C 1.39282 * 120.46964 * 0.02562 * 17 16 15 19 19 O 1.35945 * 119.72604 * 180.02562 * 18 17 16 20 20 C 1.38199 * 120.54718 * 0.02562 * 18 17 16 21 21 C 1.39094 * 119.74000 * 359.97438 * 20 18 17 22 22 N 1.36962 * 125.04619 * 265.00129 * 13 9 7 23 23 H 0.97003 * 125.06648 * 0.02562 * 22 13 9 24 24 H 0.96995 * 120.00143 * 0.02562 * 1 2 3 25 25 H 1.09003 * 109.47034 * 185.36090 * 11 9 7 26 26 H 1.09001 * 109.47211 * 305.35806 * 11 9 7 27 27 H 1.00898 * 111.00172 * 61.10720 * 12 11 9 28 28 H 1.00900 * 110.99972 * 185.05983 * 12 11 9 29 29 H 1.08000 * 126.49046 * 359.96350 * 14 13 9 30 30 H 1.08001 * 120.08271 * 0.05326 * 16 15 14 31 31 H 1.07988 * 119.76423 * 179.97438 * 17 16 15 32 32 H 0.96702 * 113.99813 * 269.98412 * 19 18 17 33 33 H 1.08005 * 120.12979 * 179.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6099 1.9810 -1.3939 5 1 1.3945 2.6827 0.5837 6 1 3.4854 1.4755 0.8103 7 6 2.0046 -1.1940 0.0005 8 1 1.4672 -2.1279 -0.0746 9 6 3.5079 -1.1961 0.1058 10 1 3.8753 -0.1703 0.0792 11 6 4.1001 -1.9805 -1.0668 12 7 3.8071 -1.2785 -2.3234 13 6 3.9197 -1.8438 1.4026 14 6 4.0757 -3.1635 1.5893 15 6 4.4733 -3.3547 2.9869 16 6 4.7700 -4.4756 3.7652 17 6 5.1177 -4.3196 5.0766 18 6 5.1782 -3.0494 5.6449 19 8 5.5265 -2.9116 6.9518 20 6 4.8871 -1.9282 4.8913 21 6 4.5313 -2.0689 3.5541 22 7 4.1945 -1.1727 2.5645 23 1 4.1526 -0.2099 2.6752 24 1 -0.4850 0.8400 -0.0004 25 1 5.1796 -2.0635 -0.9401 26 1 3.6602 -2.9773 -1.0963 27 1 4.2199 -0.3578 -2.3281 28 1 4.1155 -1.8171 -3.1190 29 1 3.9307 -3.9382 0.8509 30 1 4.7251 -5.4635 3.3310 31 1 5.3464 -5.1872 5.6775 32 1 4.7776 -2.9353 7.5630 33 1 4.9358 -0.9465 5.3390 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261067413.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:20:12 Heat of formation + Delta-G solvation = -14.725389 kcal Electronic energy + Delta-G solvation = -17256.616608 eV Core-core repulsion = 14474.465105 eV Total energy + Delta-G solvation = -2782.151504 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.17456 -39.48772 -37.28008 -35.90973 -34.28943 -32.70301 -31.32642 -30.25252 -28.09936 -25.94126 -23.88855 -22.69581 -22.36324 -20.59491 -19.39932 -19.15291 -18.09007 -17.00035 -16.65837 -16.35113 -15.86095 -15.52635 -15.25905 -15.02071 -14.90181 -14.60267 -14.31253 -14.12144 -13.50864 -13.01068 -12.87665 -12.63380 -12.40193 -12.29083 -11.89242 -11.68156 -11.40976 -11.20205 -10.68467 -10.47859 -9.27492 -8.99273 -8.46815 -8.23374 -6.24263 0.18167 0.66170 1.27723 1.37377 1.42062 1.89074 2.23049 2.35260 2.88662 3.14711 3.45011 3.84077 3.86445 4.15126 4.26242 4.33154 4.45555 4.51530 4.60716 4.77538 4.86341 4.95516 5.06703 5.12413 5.27581 5.49457 5.58073 5.59393 5.82930 6.01690 6.20802 6.33853 6.50116 6.67367 6.79085 6.87085 6.93765 7.36985 8.94138 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.028008 B = 0.006595 C = 0.005926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.461317 B = 4244.530902 C = 4724.016082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.015 3.985 3 Si 0.941 3.059 4 H -0.258 1.258 5 H -0.298 1.298 6 H -0.248 1.248 7 C -0.468 4.468 8 H 0.028 0.972 9 C 0.062 3.938 10 H 0.050 0.950 11 C 0.094 3.906 12 N -0.847 5.847 13 C 0.118 3.882 14 C -0.236 4.236 15 C -0.130 4.130 16 C -0.064 4.064 17 C -0.171 4.171 18 C 0.114 3.886 19 O -0.504 6.504 20 C -0.168 4.168 21 C 0.087 3.913 22 N -0.594 5.594 23 H 0.414 0.586 24 H 0.262 0.738 25 H 0.027 0.973 26 H 0.060 0.940 27 H 0.336 0.664 28 H 0.348 0.652 29 H 0.145 0.855 30 H 0.144 0.856 31 H 0.151 0.849 32 H 0.408 0.592 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.406 -3.994 7.494 15.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.181 4.181 3 Si 0.766 3.234 4 H -0.182 1.182 5 H -0.225 1.225 6 H -0.173 1.173 7 C -0.506 4.506 8 H 0.046 0.954 9 C 0.041 3.959 10 H 0.068 0.932 11 C -0.038 4.038 12 N -0.378 5.378 13 C 0.009 3.991 14 C -0.259 4.259 15 C -0.135 4.135 16 C -0.083 4.083 17 C -0.190 4.190 18 C 0.068 3.932 19 O -0.317 6.317 20 C -0.189 4.189 21 C -0.021 4.021 22 N -0.197 5.197 23 H 0.251 0.749 24 H 0.071 0.929 25 H 0.045 0.955 26 H 0.079 0.921 27 H 0.148 0.852 28 H 0.161 0.839 29 H 0.163 0.837 30 H 0.162 0.838 31 H 0.168 0.832 32 H 0.266 0.734 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 12.040 -3.801 7.469 14.669 hybrid contribution 0.073 1.311 -0.013 1.313 sum 12.113 -2.490 7.455 14.440 Atomic orbital electron populations 1.70051 1.08329 1.27692 1.53072 1.25868 0.95311 1.02581 0.94352 0.85873 0.78710 0.78933 0.79863 1.18216 1.22485 1.17275 1.20673 0.89541 0.92796 1.47585 0.95366 1.18069 0.95056 0.95761 0.86976 0.93226 1.21564 0.95520 0.97276 0.89426 1.58300 1.68823 1.06708 1.03951 1.21224 0.96335 0.92706 0.88825 1.21432 1.14350 0.94760 0.95402 1.19582 1.06130 0.93190 0.94615 1.20384 0.97249 0.97587 0.93048 1.21047 1.05002 0.97182 0.95817 1.17960 0.98861 0.91419 0.84917 1.84760 1.37763 1.95491 1.13652 1.20316 1.07358 1.00205 0.91054 1.18278 1.03133 0.89814 0.90855 1.41913 1.60579 1.08723 1.08530 0.74916 0.92854 0.95494 0.92118 0.85155 0.83864 0.83720 0.83777 0.83153 0.73362 0.84909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.77 13.96 21.45 0.30 -58.47 16 2 C 0.02 0.86 5.47 84.66 0.46 1.32 16 3 Si 0.94 42.05 27.23 68.60 1.87 43.91 16 4 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 5 H -0.30 -13.57 7.11 99.48 0.71 -12.87 16 6 H -0.25 -9.79 6.40 99.48 0.64 -9.15 16 7 C -0.47 -25.51 8.58 25.60 0.22 -25.29 16 8 H 0.03 1.77 8.06 -2.90 -0.02 1.75 16 9 C 0.06 2.66 2.38 -12.29 -0.03 2.63 16 10 H 0.05 2.09 4.52 -2.39 -0.01 2.08 16 11 C 0.09 3.45 5.58 86.30 0.48 3.94 16 12 N -0.85 -29.44 9.32 -186.71 -1.74 -31.18 16 13 C 0.12 4.88 6.02 40.83 0.25 5.13 16 14 C -0.24 -9.20 10.19 23.52 0.24 -8.96 16 15 C -0.13 -4.70 6.37 -20.18 -0.13 -4.82 16 16 C -0.06 -1.87 10.05 22.22 0.22 -1.64 16 17 C -0.17 -4.39 9.91 22.13 0.22 -4.17 16 18 C 0.11 3.08 6.69 22.51 0.15 3.23 16 19 O -0.50 -11.03 13.49 -92.93 -1.25 -12.29 16 20 C -0.17 -5.11 10.00 22.47 0.22 -4.88 16 21 C 0.09 3.11 7.27 39.02 0.28 3.39 16 22 N -0.59 -22.54 6.08 -175.88 -1.07 -23.61 16 23 H 0.41 14.29 8.96 -92.71 -0.83 13.46 16 24 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 25 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.06 2.32 7.46 -2.39 -0.02 2.30 16 27 H 0.34 10.75 9.05 -89.70 -0.81 9.94 16 28 H 0.35 9.66 9.08 -89.69 -0.81 8.85 16 29 H 0.15 5.28 7.42 -2.91 -0.02 5.26 16 30 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 31 H 0.15 2.95 8.06 -2.92 -0.02 2.93 16 32 H 0.41 4.86 9.06 -74.06 -0.67 4.19 16 33 H 0.13 3.55 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -69.65 283.42 -1.31 -70.97 By element: Atomic # 1 Polarization: 42.81 SS G_CDS: -2.01 Total: 40.80 kcal Atomic # 6 Polarization: -32.73 SS G_CDS: 2.59 Total: -30.14 kcal Atomic # 7 Polarization: -110.75 SS G_CDS: -2.51 Total: -113.26 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: -1.25 Total: -12.29 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 1.87 Total: 43.91 kcal Total: -69.65 -1.31 -70.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261067413.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.242 kcal (2) G-P(sol) polarization free energy of solvation -69.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds