Wall clock time and date at job start Mon Mar 30 2020 04:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00402 * 2 1 4 4 H 1.48504 * 109.47301 * 270.00635 * 3 2 1 5 5 H 1.48504 * 109.47006 * 30.00497 * 3 2 1 6 6 H 1.48501 * 109.47212 * 150.00499 * 3 2 1 7 7 C 1.37882 * 119.99517 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99974 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99869 * 179.97438 * 7 2 1 10 10 H 1.09004 * 109.47113 * 59.99852 * 9 7 2 11 11 N 1.46906 * 109.47109 * 299.99966 * 9 7 2 12 12 C 1.50699 * 109.47227 * 179.97438 * 9 7 2 13 13 C 1.38147 * 120.05242 * 99.99774 * 12 9 7 14 14 C 1.38268 * 120.08765 * 179.97438 * 13 12 9 15 15 C 1.38321 * 120.14794 * 0.02562 * 14 13 12 16 16 C 1.38043 * 120.02492 * 0.02562 * 15 14 13 17 17 C 1.38820 * 120.05328 * 279.72392 * 12 9 7 18 18 N 1.39824 * 120.19970 * 359.97188 * 17 12 9 19 19 C 1.34565 * 120.45228 * 198.47063 * 18 17 12 20 20 O 1.21290 * 119.61200 * 180.85025 * 19 18 17 21 21 C 1.50490 * 120.77821 * 0.83393 * 19 18 17 22 22 C 1.50660 * 120.17927 * 179.97438 * 16 15 14 23 23 H 0.97001 * 119.99632 * 359.97438 * 1 2 3 24 24 H 1.00900 * 110.99744 * 300.00048 * 11 9 7 25 25 H 1.00907 * 110.99952 * 63.95027 * 11 9 7 26 26 H 1.07999 * 119.95662 * 359.96303 * 13 12 9 27 27 H 1.08001 * 119.92109 * 179.97438 * 14 13 12 28 28 H 1.08002 * 119.98202 * 179.97438 * 15 14 13 29 29 H 0.96996 * 119.77464 * 18.50034 * 18 17 12 30 30 H 1.08998 * 109.40282 * 84.95922 * 21 19 18 31 31 H 1.09005 * 109.40135 * 204.69364 * 21 19 18 32 32 H 1.09004 * 109.45880 * 266.04405 * 22 16 15 33 33 H 1.09003 * 109.46060 * 26.00288 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7002 6 1 3.5469 1.4400 0.6999 7 6 2.0045 -1.1942 -0.0005 8 1 1.4644 -2.1293 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 1 3.8752 -0.6806 0.8889 11 7 4.0008 -0.5015 -1.2006 12 6 4.0138 -2.6151 -0.0010 13 6 4.4396 -3.1984 -1.1786 14 6 4.9011 -4.5018 -1.1793 15 6 4.9376 -5.2264 -0.0016 16 6 4.5124 -4.6492 1.1781 17 6 4.0546 -3.3379 1.1835 18 7 3.6311 -2.7517 2.3801 19 6 3.9975 -3.2765 3.5638 20 8 3.6087 -2.7648 4.5924 21 6 4.8838 -4.4911 3.6263 22 6 4.5501 -5.4354 2.4627 23 1 -0.4850 0.8401 0.0004 24 1 3.6769 -0.9588 -2.0397 25 1 3.7313 0.4709 -1.1918 26 1 4.4119 -2.6357 -2.1000 27 1 5.2330 -4.9553 -2.1015 28 1 5.2982 -6.2444 -0.0052 29 1 3.0689 -1.9616 2.3569 30 1 5.9270 -4.1818 3.5629 31 1 4.7186 -5.0117 4.5697 32 1 3.5811 -5.9060 2.6290 33 1 5.3201 -6.2040 2.3956 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261070459.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:30 Heat of formation + Delta-G solvation = -14.522227 kcal Electronic energy + Delta-G solvation = -17869.945613 eV Core-core repulsion = 15087.802919 eV Total energy + Delta-G solvation = -2782.142694 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.60635 -38.38708 -35.61070 -34.73025 -33.13027 -31.88267 -29.25249 -29.07547 -26.31657 -24.34022 -23.16941 -22.37739 -20.06365 -18.64208 -17.57495 -17.12514 -16.69168 -15.73807 -15.51845 -14.67145 -14.43689 -14.19443 -13.96566 -13.52963 -13.18600 -13.02474 -12.66772 -12.35609 -12.19633 -11.88155 -11.58279 -11.28578 -10.91207 -10.72951 -10.57054 -10.27894 -10.12549 -9.72910 -9.57600 -8.90165 -8.21800 -7.77461 -7.37511 -6.34700 -4.41015 1.62911 1.84697 2.92798 3.05383 3.20300 3.21834 3.55791 4.12872 4.25874 4.65829 4.81001 4.94918 4.95826 5.19641 5.31135 5.47824 5.57732 5.65705 5.72372 5.85211 5.93260 6.04498 6.27022 6.34121 6.54458 6.74406 6.92766 7.08408 7.14347 7.29205 7.38466 7.74547 7.94533 8.14118 8.35026 8.41592 8.72490 9.23199 10.77139 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.022248 B = 0.009164 C = 0.007254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.233819 B = 3054.838358 C = 3858.760473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.077 3.923 3 Si 0.871 3.129 4 H -0.273 1.273 5 H -0.289 1.289 6 H -0.259 1.259 7 C -0.555 4.555 8 H 0.078 0.922 9 C 0.207 3.793 10 H 0.048 0.952 11 N -0.847 5.847 12 C -0.052 4.052 13 C -0.084 4.084 14 C -0.144 4.144 15 C -0.108 4.108 16 C -0.132 4.132 17 C 0.157 3.843 18 N -0.650 5.650 19 C 0.515 3.485 20 O -0.543 6.543 21 C -0.137 4.137 22 C -0.071 4.071 23 H 0.268 0.732 24 H 0.333 0.667 25 H 0.319 0.681 26 H 0.128 0.872 27 H 0.117 0.883 28 H 0.119 0.881 29 H 0.424 0.576 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.488 -9.184 0.061 13.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.128 4.128 3 Si 0.699 3.301 4 H -0.200 1.200 5 H -0.215 1.215 6 H -0.184 1.184 7 C -0.595 4.595 8 H 0.096 0.904 9 C 0.097 3.903 10 H 0.066 0.934 11 N -0.381 5.381 12 C -0.054 4.054 13 C -0.103 4.103 14 C -0.163 4.163 15 C -0.126 4.126 16 C -0.134 4.134 17 C 0.061 3.939 18 N -0.295 5.295 19 C 0.303 3.697 20 O -0.420 6.420 21 C -0.177 4.177 22 C -0.108 4.108 23 H 0.078 0.922 24 H 0.146 0.854 25 H 0.135 0.865 26 H 0.146 0.854 27 H 0.135 0.865 28 H 0.136 0.864 29 H 0.265 0.735 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.097 0.903 33 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 10.929 -9.098 0.993 14.255 hybrid contribution -1.056 1.479 -0.415 1.864 sum 9.873 -7.619 0.578 12.485 Atomic orbital electron populations 1.69886 1.06205 1.27423 1.48219 1.25047 0.94858 0.99037 0.93879 0.87036 0.80412 0.83917 0.78716 1.19978 1.21535 1.18390 1.21589 0.89254 0.95062 1.53560 0.90372 1.18391 0.93697 0.87288 0.90876 0.93404 1.59706 1.66835 1.05713 1.05872 1.19742 0.97498 0.96927 0.91275 1.20822 0.97413 0.94299 0.97798 1.20997 1.02659 0.94970 0.97631 1.20582 1.01175 0.99241 0.91648 1.19352 1.05549 0.92663 0.95880 1.17402 0.98942 0.91706 0.85876 1.43726 1.50040 1.31648 1.04070 1.20689 0.80717 0.85444 0.82805 1.90738 1.55537 1.62673 1.33065 1.21772 1.00453 0.94419 1.01044 1.20457 1.02875 0.96903 0.90594 0.92159 0.85420 0.86504 0.85445 0.86525 0.86351 0.73514 0.88225 0.87950 0.90277 0.89758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.59 13.96 55.43 0.77 -24.81 16 2 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.87 20.27 24.61 -169.99 -4.18 16.08 16 4 H -0.27 -6.08 7.01 56.52 0.40 -5.69 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.26 -5.91 6.54 56.52 0.37 -5.54 16 7 C -0.56 -14.46 8.74 -34.44 -0.30 -14.76 16 8 H 0.08 2.27 7.98 -52.49 -0.42 1.86 16 9 C 0.21 4.62 1.84 -70.01 -0.13 4.49 16 10 H 0.05 1.13 6.47 -51.93 -0.34 0.79 16 11 N -0.85 -17.55 8.63 -6.64 -0.06 -17.61 16 12 C -0.05 -1.02 5.04 -104.44 -0.53 -1.55 16 13 C -0.08 -1.45 9.25 -39.60 -0.37 -1.82 16 14 C -0.14 -2.07 10.04 -39.54 -0.40 -2.47 16 15 C -0.11 -1.47 9.69 -39.62 -0.38 -1.86 16 16 C -0.13 -2.00 5.65 -104.47 -0.59 -2.59 16 17 C 0.16 2.91 6.47 -83.76 -0.54 2.36 16 18 N -0.65 -12.54 5.12 -10.01 -0.05 -12.60 16 19 C 0.52 9.23 7.71 -11.18 -0.09 9.14 16 20 O -0.54 -11.48 17.91 5.55 0.10 -11.38 16 21 C -0.14 -1.75 6.11 -27.71 -0.17 -1.91 16 22 C -0.07 -0.85 6.03 -27.63 -0.17 -1.01 16 23 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 24 H 0.33 6.45 7.29 -39.29 -0.29 6.16 16 25 H 0.32 6.81 4.30 -39.29 -0.17 6.64 16 26 H 0.13 2.07 6.25 -52.49 -0.33 1.75 16 27 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 28 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 29 H 0.42 9.07 7.00 -40.82 -0.29 8.78 16 30 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.08 0.75 8.06 -51.93 -0.42 0.34 16 LS Contribution 269.12 15.07 4.06 4.06 Total: -1.00 -30.33 269.12 -6.65 -36.97 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: -3.53 Total: 19.28 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -3.76 Total: -10.00 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: 0.67 Total: -55.02 kcal Atomic # 8 Polarization: -11.48 SS G_CDS: 0.10 Total: -11.38 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -4.18 Total: 16.08 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.33 -6.65 -36.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261070459.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.453 kcal (2) G-P(sol) polarization free energy of solvation -30.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds