Wall clock time and date at job start Mon Mar 30 2020 04:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 120.00190 * 2 1 4 4 H 1.48493 * 109.47177 * 270.00458 * 3 2 1 5 5 H 1.48504 * 109.46992 * 30.00504 * 3 2 1 6 6 H 1.48502 * 109.46606 * 150.00235 * 3 2 1 7 7 C 1.37878 * 119.99604 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00126 * 170.63122 * 7 2 1 9 9 C 1.50702 * 120.00131 * 350.61857 * 7 2 1 10 10 H 1.08997 * 109.46978 * 54.55601 * 9 7 2 11 11 C 1.52998 * 109.47508 * 294.55644 * 9 7 2 12 12 N 1.46894 * 109.47376 * 176.87733 * 11 9 7 13 13 C 1.50702 * 109.47171 * 174.55476 * 9 7 2 14 14 C 1.34205 * 125.05180 * 265.00279 * 13 9 7 15 15 C 1.46492 * 106.99269 * 180.02562 * 14 13 9 16 16 C 1.40565 * 106.09360 * 0.02562 * 15 14 13 17 17 C 1.39176 * 119.46683 * 180.02562 * 16 15 14 18 18 C 1.37763 * 120.02205 * 0.02642 * 17 16 15 19 19 C 1.38741 * 120.72350 * 359.97438 * 18 17 16 20 20 C 1.38170 * 120.31439 * 359.94713 * 19 18 17 21 21 O 1.35878 * 120.22235 * 180.02562 * 20 19 18 22 22 N 1.36930 * 125.05128 * 85.02249 * 13 9 7 23 23 H 0.97000 * 125.06747 * 359.96911 * 22 13 9 24 24 H 0.96994 * 119.99423 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46745 * 296.87962 * 11 9 7 26 26 H 1.09006 * 109.47012 * 56.87959 * 11 9 7 27 27 H 1.00897 * 111.00086 * 184.53810 * 12 11 9 28 28 H 1.00899 * 111.00353 * 308.49614 * 12 11 9 29 29 H 1.08002 * 126.50381 * 0.28932 * 14 13 9 30 30 H 1.07996 * 119.98916 * 179.97438 * 17 16 15 31 31 H 1.08004 * 119.63459 * 179.97438 * 18 17 16 32 32 H 1.07995 * 119.84481 * 179.97438 * 19 18 17 33 33 H 0.96706 * 113.99530 * 270.06040 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4468 2.6526 0.7002 6 1 3.5468 1.4399 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0737 -1.2004 -0.1528 9 6 1.2661 -2.4906 0.2116 10 1 0.4572 -2.5710 -0.5146 11 6 0.6857 -2.5213 1.6269 12 7 -0.0968 -3.7511 1.8087 13 6 2.2176 -3.6456 0.0337 14 6 2.3900 -4.3337 -1.1055 15 6 3.3988 -5.3613 -0.8365 16 6 3.7695 -5.2004 0.5098 17 6 4.7267 -6.0464 1.0622 18 6 5.3034 -7.0314 0.2909 19 6 4.9408 -7.1942 -1.0384 20 6 3.9917 -6.3677 -1.6086 21 8 3.6376 -6.5290 -2.9105 22 7 3.0345 -4.1492 1.0105 23 1 3.0872 -3.8154 1.9197 24 1 -0.4849 0.8400 0.0004 25 1 1.4980 -2.4967 2.3533 26 1 0.0404 -1.6551 1.7739 27 1 -0.5514 -3.7607 2.7094 28 1 -0.7676 -3.8664 1.0639 29 1 1.8843 -4.1599 -2.0439 30 1 5.0181 -5.9300 2.0955 31 1 6.0459 -7.6842 0.7258 32 1 5.4023 -7.9708 -1.6301 33 1 4.1718 -6.0135 -3.5301 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261072350.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:47 Heat of formation + Delta-G solvation = 1.831673 kcal Electronic energy + Delta-G solvation = -17373.581301 eV Core-core repulsion = 14592.147765 eV Total energy + Delta-G solvation = -2781.433536 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.68062 -37.83707 -35.84706 -34.58865 -32.38800 -30.68461 -29.72384 -28.29989 -26.87880 -24.08569 -22.20903 -21.66733 -20.42862 -19.22409 -18.21905 -16.71694 -16.19557 -15.48918 -15.14150 -14.79030 -14.42540 -14.16727 -13.85877 -13.40154 -13.19122 -12.87294 -12.34788 -12.20090 -11.90034 -11.42353 -11.10541 -10.99676 -10.75737 -10.72589 -10.35686 -10.14563 -9.83963 -9.53483 -8.92655 -8.61385 -7.84302 -7.56251 -6.89796 -6.24751 -4.30121 1.54050 2.06384 3.18535 3.26045 3.29171 3.62359 3.84770 4.19182 4.29337 4.69913 5.04914 5.26467 5.39562 5.51666 5.59454 5.79310 5.93902 6.15159 6.27004 6.35609 6.54622 6.64168 6.67833 6.84072 6.96184 7.10132 7.22105 7.31927 7.56886 7.70902 7.78649 7.93559 8.09813 8.10830 8.19551 8.33106 8.73579 9.34997 10.81670 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.026871 B = 0.006362 C = 0.006016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.766069 B = 4399.732837 C = 4652.888198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.068 3.932 3 Si 0.895 3.105 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.517 4.517 8 H 0.061 0.939 9 C 0.098 3.902 10 H 0.059 0.941 11 C 0.065 3.935 12 N -0.857 5.857 13 C 0.173 3.827 14 C -0.239 4.239 15 C -0.117 4.117 16 C 0.100 3.900 17 C -0.137 4.137 18 C -0.106 4.106 19 C -0.183 4.183 20 C 0.137 3.863 21 O -0.499 6.499 22 N -0.578 5.578 23 H 0.411 0.589 24 H 0.264 0.736 25 H 0.042 0.958 26 H 0.051 0.949 27 H 0.322 0.678 28 H 0.336 0.664 29 H 0.137 0.863 30 H 0.114 0.886 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.950 -8.249 1.328 10.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.135 4.135 3 Si 0.722 3.278 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.556 4.556 8 H 0.079 0.921 9 C 0.078 3.922 10 H 0.077 0.923 11 C -0.065 4.065 12 N -0.385 5.385 13 C 0.063 3.937 14 C -0.262 4.262 15 C -0.123 4.123 16 C -0.008 4.008 17 C -0.158 4.158 18 C -0.125 4.125 19 C -0.204 4.204 20 C 0.092 3.908 21 O -0.308 6.308 22 N -0.179 5.179 23 H 0.248 0.752 24 H 0.074 0.926 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.132 0.868 28 H 0.147 0.853 29 H 0.155 0.845 30 H 0.132 0.868 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 6.049 -8.797 1.594 10.794 hybrid contribution -0.027 2.068 0.293 2.089 sum 6.021 -6.729 1.887 9.224 Atomic orbital electron populations 1.69941 1.05992 1.27178 1.49160 1.24962 0.94853 0.99316 0.94378 0.86538 0.79912 0.82910 0.78434 1.20387 1.21048 1.19761 1.20940 0.94350 0.89561 1.50740 0.92113 1.17753 0.92234 0.88380 0.93803 0.92265 1.21961 0.96232 0.89750 0.98569 1.59014 1.31860 1.41321 1.06278 1.21074 0.91577 0.94461 0.86554 1.21161 1.05665 1.00393 0.99000 1.19507 1.01047 0.98143 0.93594 1.18083 0.97009 0.92387 0.93352 1.19939 0.98875 0.97314 0.99653 1.20406 1.00455 0.98192 0.93491 1.20914 1.00472 1.02532 0.96433 1.17835 0.94830 0.94187 0.83961 1.84762 1.61345 1.70353 1.14353 1.41846 1.35160 1.27857 1.13041 0.75172 0.92599 0.93904 0.93046 0.86811 0.85291 0.84527 0.86801 0.86225 0.86346 0.76175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.61 12.15 55.43 0.67 -22.94 16 2 C 0.07 1.76 5.18 -17.82 -0.09 1.67 16 3 Si 0.89 20.22 29.55 -169.99 -5.02 15.19 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.52 -13.30 8.47 -34.44 -0.29 -13.59 16 8 H 0.06 1.60 7.76 -52.49 -0.41 1.19 16 9 C 0.10 2.28 2.10 -92.92 -0.20 2.08 16 10 H 0.06 1.52 8.08 -51.93 -0.42 1.10 16 11 C 0.07 1.38 5.87 -3.83 -0.02 1.36 16 12 N -0.86 -15.60 9.32 -10.37 -0.10 -15.70 16 13 C 0.17 3.73 5.43 -81.74 -0.44 3.28 16 14 C -0.24 -5.13 10.95 -37.68 -0.41 -5.55 16 15 C -0.12 -2.33 6.32 -105.03 -0.66 -2.99 16 16 C 0.10 1.88 7.27 -84.00 -0.61 1.27 16 17 C -0.14 -2.15 10.06 -39.41 -0.40 -2.55 16 18 C -0.11 -1.52 10.01 -39.57 -0.40 -1.91 16 19 C -0.18 -2.79 9.97 -39.42 -0.39 -3.19 16 20 C 0.14 2.40 6.74 -38.94 -0.26 2.14 16 21 O -0.50 -7.95 13.51 -19.36 -0.26 -8.22 16 22 N -0.58 -11.15 5.84 -6.95 -0.04 -11.19 16 23 H 0.41 7.22 7.95 -40.82 -0.32 6.90 16 24 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 25 H 0.04 0.88 7.18 -51.93 -0.37 0.51 16 26 H 0.05 1.21 6.83 -51.93 -0.35 0.86 16 27 H 0.32 5.09 9.08 -39.29 -0.36 4.73 16 28 H 0.34 6.11 8.93 -39.29 -0.35 5.76 16 29 H 0.14 2.87 8.06 -52.49 -0.42 2.45 16 30 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.12 1.33 8.06 -52.48 -0.42 0.90 16 32 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 33 H 0.38 4.28 9.06 45.56 0.41 4.69 16 LS Contribution 285.48 15.07 4.30 4.30 Total: -1.00 -28.82 285.48 -7.63 -36.44 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: -3.00 Total: 20.08 kcal Atomic # 6 Polarization: -13.80 SS G_CDS: -4.18 Total: -17.98 kcal Atomic # 7 Polarization: -50.36 SS G_CDS: 0.54 Total: -49.83 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: -0.26 Total: -8.22 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.82 -7.63 -36.44 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261072350.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.274 kcal (2) G-P(sol) polarization free energy of solvation -28.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds