Wall clock time and date at job start Mon Mar 30 2020 04:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86800 * 120.00190 * 2 1 4 4 H 1.48493 * 109.47177 * 270.00458 * 3 2 1 5 5 H 1.48504 * 109.46992 * 30.00504 * 3 2 1 6 6 H 1.48502 * 109.46606 * 150.00235 * 3 2 1 7 7 C 1.37878 * 119.99604 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00126 * 170.63122 * 7 2 1 9 9 C 1.50702 * 120.00131 * 350.61857 * 7 2 1 10 10 H 1.08997 * 109.46978 * 54.55601 * 9 7 2 11 11 C 1.52998 * 109.47508 * 294.55644 * 9 7 2 12 12 N 1.46894 * 109.47376 * 176.87733 * 11 9 7 13 13 C 1.50702 * 109.47171 * 174.55476 * 9 7 2 14 14 C 1.34205 * 125.05180 * 265.00279 * 13 9 7 15 15 C 1.46492 * 106.99269 * 180.02562 * 14 13 9 16 16 C 1.40565 * 106.09360 * 0.02562 * 15 14 13 17 17 C 1.39176 * 119.46683 * 180.02562 * 16 15 14 18 18 C 1.37763 * 120.02205 * 0.02642 * 17 16 15 19 19 C 1.38741 * 120.72350 * 359.97438 * 18 17 16 20 20 C 1.38170 * 120.31439 * 359.94713 * 19 18 17 21 21 O 1.35878 * 120.22235 * 180.02562 * 20 19 18 22 22 N 1.36930 * 125.05128 * 85.02249 * 13 9 7 23 23 H 0.97000 * 125.06747 * 359.96911 * 22 13 9 24 24 H 0.96994 * 119.99423 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.46745 * 296.87962 * 11 9 7 26 26 H 1.09006 * 109.47012 * 56.87959 * 11 9 7 27 27 H 1.00897 * 111.00086 * 184.53810 * 12 11 9 28 28 H 1.00899 * 111.00353 * 308.49614 * 12 11 9 29 29 H 1.08002 * 126.50381 * 0.28932 * 14 13 9 30 30 H 1.07996 * 119.98916 * 179.97438 * 17 16 15 31 31 H 1.08004 * 119.63459 * 179.97438 * 18 17 16 32 32 H 1.07995 * 119.84481 * 179.97438 * 19 18 17 33 33 H 0.96706 * 113.99530 * 270.06040 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4468 2.6526 0.7002 6 1 3.5468 1.4399 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0737 -1.2004 -0.1528 9 6 1.2661 -2.4906 0.2116 10 1 0.4572 -2.5710 -0.5146 11 6 0.6857 -2.5213 1.6269 12 7 -0.0968 -3.7511 1.8087 13 6 2.2176 -3.6456 0.0337 14 6 2.3900 -4.3337 -1.1055 15 6 3.3988 -5.3613 -0.8365 16 6 3.7695 -5.2004 0.5098 17 6 4.7267 -6.0464 1.0622 18 6 5.3034 -7.0314 0.2909 19 6 4.9408 -7.1942 -1.0384 20 6 3.9917 -6.3677 -1.6086 21 8 3.6376 -6.5290 -2.9105 22 7 3.0345 -4.1492 1.0105 23 1 3.0872 -3.8154 1.9197 24 1 -0.4849 0.8400 0.0004 25 1 1.4980 -2.4967 2.3533 26 1 0.0404 -1.6551 1.7739 27 1 -0.5514 -3.7607 2.7094 28 1 -0.7676 -3.8664 1.0639 29 1 1.8843 -4.1599 -2.0439 30 1 5.0181 -5.9300 2.0955 31 1 6.0459 -7.6842 0.7258 32 1 5.4023 -7.9708 -1.6301 33 1 4.1718 -6.0135 -3.5301 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261072350.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:46 Heat of formation + Delta-G solvation = -19.616852 kcal Electronic energy + Delta-G solvation = -17374.511379 eV Core-core repulsion = 14592.147765 eV Total energy + Delta-G solvation = -2782.363614 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.10976 -39.16555 -37.30630 -36.10709 -34.24388 -32.15962 -31.32112 -29.64530 -28.43943 -25.95658 -23.69178 -23.02646 -21.91571 -20.83835 -19.54539 -18.64869 -17.58529 -16.84516 -16.71877 -16.38354 -15.90281 -15.51480 -15.43374 -14.82427 -14.72432 -14.54415 -14.04868 -13.81284 -13.25230 -13.04885 -12.90944 -12.56349 -12.28666 -12.10580 -11.96702 -11.78521 -11.41211 -11.38171 -10.60341 -10.33192 -9.44677 -8.95202 -8.40397 -8.17583 -6.34527 0.24547 0.78012 1.38345 1.40712 1.50190 2.01585 2.37816 2.43244 2.92671 3.06062 3.47637 3.89871 4.00168 4.20309 4.37397 4.42818 4.53588 4.61124 4.75710 4.90530 5.02793 5.15053 5.19950 5.34772 5.49138 5.63029 5.65827 5.72216 5.90332 6.01894 6.09732 6.34290 6.40788 6.64395 6.78939 6.85309 6.98351 7.33586 8.82864 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.026871 B = 0.006362 C = 0.006016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.766069 B = 4399.732837 C = 4652.888198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.026 3.974 3 Si 0.953 3.047 4 H -0.278 1.278 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.531 4.531 8 H 0.049 0.951 9 C 0.104 3.896 10 H 0.024 0.976 11 C 0.082 3.918 12 N -0.848 5.848 13 C 0.156 3.844 14 C -0.259 4.259 15 C -0.151 4.151 16 C 0.088 3.912 17 C -0.142 4.142 18 C -0.090 4.090 19 C -0.177 4.177 20 C 0.123 3.877 21 O -0.509 6.509 22 N -0.575 5.575 23 H 0.417 0.583 24 H 0.266 0.734 25 H 0.050 0.950 26 H 0.024 0.976 27 H 0.339 0.661 28 H 0.336 0.664 29 H 0.124 0.876 30 H 0.142 0.858 31 H 0.164 0.836 32 H 0.148 0.852 33 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.068 -9.724 2.268 12.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.174 4.174 3 Si 0.778 3.222 4 H -0.203 1.203 5 H -0.204 1.204 6 H -0.193 1.193 7 C -0.570 4.570 8 H 0.068 0.932 9 C 0.084 3.916 10 H 0.042 0.958 11 C -0.049 4.049 12 N -0.377 5.377 13 C 0.046 3.954 14 C -0.283 4.283 15 C -0.156 4.156 16 C -0.020 4.020 17 C -0.163 4.163 18 C -0.109 4.109 19 C -0.197 4.197 20 C 0.078 3.922 21 O -0.321 6.321 22 N -0.177 5.177 23 H 0.255 0.745 24 H 0.075 0.925 25 H 0.068 0.932 26 H 0.043 0.957 27 H 0.151 0.849 28 H 0.147 0.853 29 H 0.142 0.858 30 H 0.160 0.840 31 H 0.181 0.819 32 H 0.166 0.834 33 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges 8.177 -10.283 2.542 13.381 hybrid contribution -0.617 2.373 -0.069 2.453 sum 7.560 -7.910 2.473 11.217 Atomic orbital electron populations 1.70040 1.07107 1.27844 1.49821 1.25637 0.95562 1.02146 0.94071 0.85629 0.78870 0.79346 0.78315 1.20332 1.20416 1.19331 1.21144 0.93958 0.91029 1.50861 0.93248 1.17495 0.91615 0.88492 0.94000 0.95760 1.21624 0.96113 0.89769 0.97359 1.58920 1.32034 1.39399 1.07315 1.20680 0.92572 0.94617 0.87524 1.21237 1.06722 1.01738 0.98639 1.19728 1.01762 0.99128 0.94982 1.18499 0.97701 0.92619 0.93187 1.20365 0.97834 0.96767 1.01294 1.20965 0.99805 0.97327 0.92780 1.21316 0.99120 1.02047 0.97203 1.18099 0.95412 0.94249 0.84471 1.84702 1.62362 1.70758 1.14318 1.41698 1.35026 1.28149 1.12816 0.74495 0.92537 0.93170 0.95746 0.84886 0.85271 0.85787 0.83975 0.81877 0.83421 0.74015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.82 12.15 21.45 0.26 -49.56 16 2 C 0.03 1.39 5.18 84.65 0.44 1.83 16 3 Si 0.95 41.89 29.55 68.60 2.03 43.92 16 4 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.28 -11.91 7.11 99.48 0.71 -11.21 16 6 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.53 -28.20 8.47 25.60 0.22 -27.99 16 8 H 0.05 2.67 7.76 -2.91 -0.02 2.65 16 9 C 0.10 5.04 2.10 -12.29 -0.03 5.02 16 10 H 0.02 1.33 8.08 -2.39 -0.02 1.31 16 11 C 0.08 3.57 5.87 86.30 0.51 4.08 16 12 N -0.85 -31.06 9.32 -186.72 -1.74 -32.80 16 13 C 0.16 6.96 5.43 40.84 0.22 7.18 16 14 C -0.26 -11.63 10.95 23.50 0.26 -11.37 16 15 C -0.15 -5.98 6.32 -20.13 -0.13 -6.11 16 16 C 0.09 3.20 7.27 39.01 0.28 3.48 16 17 C -0.14 -3.98 10.06 22.38 0.23 -3.76 16 18 C -0.09 -2.14 10.01 22.28 0.22 -1.92 16 19 C -0.18 -4.74 9.97 22.37 0.22 -4.51 16 20 C 0.12 4.13 6.74 22.68 0.15 4.28 16 21 O -0.51 -15.76 13.51 -92.17 -1.25 -17.00 16 22 N -0.57 -22.17 5.84 -175.90 -1.03 -23.20 16 23 H 0.42 14.47 7.95 -92.71 -0.74 13.73 16 24 H 0.27 13.84 8.31 -92.71 -0.77 13.07 16 25 H 0.05 2.07 7.18 -2.38 -0.02 2.06 16 26 H 0.02 1.18 6.83 -2.38 -0.02 1.17 16 27 H 0.34 10.50 9.08 -89.70 -0.81 9.68 16 28 H 0.34 12.51 8.93 -89.69 -0.80 11.71 16 29 H 0.12 5.61 8.06 -2.91 -0.02 5.59 16 30 H 0.14 3.14 8.06 -2.91 -0.02 3.12 16 31 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 32 H 0.15 3.07 8.06 -2.91 -0.02 3.05 16 33 H 0.40 8.62 9.06 -74.05 -0.67 7.95 16 Total: -1.00 -63.30 285.48 -0.97 -64.27 By element: Atomic # 1 Polarization: 45.99 SS G_CDS: -1.84 Total: 44.15 kcal Atomic # 6 Polarization: -32.37 SS G_CDS: 2.60 Total: -29.78 kcal Atomic # 7 Polarization: -103.05 SS G_CDS: -2.51 Total: -105.56 kcal Atomic # 8 Polarization: -15.76 SS G_CDS: -1.25 Total: -17.00 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -63.30 -0.97 -64.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261072350.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.657 kcal (2) G-P(sol) polarization free energy of solvation -63.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds