Wall clock time and date at job start Mon Mar 30 2020 04:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99889 * 2 1 4 4 H 1.48503 * 109.47287 * 264.85415 * 3 2 1 5 5 H 1.48499 * 109.46887 * 24.85692 * 3 2 1 6 6 H 1.48500 * 109.46993 * 144.85654 * 3 2 1 7 7 C 1.37882 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99740 * 4.80091 * 7 2 1 9 9 C 1.50700 * 119.99651 * 184.80165 * 7 2 1 10 10 H 1.08996 * 109.47305 * 335.01276 * 9 7 2 11 11 C 1.52997 * 109.46916 * 95.01608 * 9 7 2 12 12 N 1.46906 * 109.47037 * 185.45920 * 11 9 7 13 13 C 1.50699 * 109.46914 * 215.01619 * 9 7 2 14 14 C 1.34207 * 125.05391 * 94.72198 * 13 9 7 15 15 C 1.46491 * 106.99215 * 179.86078 * 14 13 9 16 16 C 1.40569 * 106.09525 * 0.39491 * 15 14 13 17 17 C 1.39179 * 119.46459 * 179.78248 * 16 15 14 18 18 C 1.37762 * 120.02278 * 359.97438 * 17 16 15 19 19 C 1.38742 * 120.72135 * 0.02562 * 18 17 16 20 20 C 1.38159 * 120.31713 * 359.97265 * 19 18 17 21 21 O 1.35879 * 120.22112 * 180.02562 * 20 19 18 22 22 N 1.36938 * 125.04877 * 275.02712 * 13 9 7 23 23 H 0.96998 * 125.07217 * 0.02562 * 22 13 9 24 24 H 0.96999 * 120.00361 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47250 * 65.46057 * 11 9 7 26 26 H 1.08996 * 109.47105 * 305.45640 * 11 9 7 27 27 H 1.00894 * 111.00053 * 179.97438 * 12 11 9 28 28 H 1.00898 * 110.99692 * 303.95736 * 12 11 9 29 29 H 1.07996 * 126.50146 * 359.97438 * 14 13 9 30 30 H 1.07996 * 119.98543 * 179.97438 * 17 16 15 31 31 H 1.08000 * 119.63574 * 179.97438 * 18 17 16 32 32 H 1.07999 * 119.84254 * 180.02562 * 19 18 17 33 33 H 0.96703 * 114.00519 * 89.99905 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6054 1.9837 -1.3944 5 1 1.3964 2.6816 0.5885 6 1 3.4881 1.4740 0.8059 7 6 2.0046 -1.1941 -0.0005 8 1 1.4674 -2.1277 -0.0792 9 6 3.5076 -1.1964 0.1087 10 1 3.9000 -0.2479 -0.2581 11 6 3.9122 -1.3839 1.5722 12 7 5.3703 -1.2557 1.6974 13 6 4.0695 -2.3252 -0.7165 14 6 4.5046 -2.2132 -1.9811 15 6 4.9660 -3.5408 -2.3943 16 6 4.7522 -4.3878 -1.2930 17 6 5.0942 -5.7336 -1.3879 18 6 5.6371 -6.2262 -2.5543 19 6 5.8499 -5.3941 -3.6439 20 6 5.5184 -4.0547 -3.5737 21 8 5.7272 -3.2416 -4.6422 22 7 4.2064 -3.6191 -0.2894 23 1 3.9560 -3.9455 0.5890 24 1 -0.4850 0.8400 -0.0004 25 1 3.6041 -2.3732 1.9105 26 1 3.4268 -0.6233 2.1837 27 1 5.6628 -1.3753 2.6556 28 1 5.8440 -1.9077 1.0903 29 1 4.5147 -1.3144 -2.5798 30 1 4.9340 -6.3918 -0.5469 31 1 5.9006 -7.2715 -2.6210 32 1 6.2759 -5.7954 -4.5515 33 1 4.9773 -3.1910 -5.2506 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261072351.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:50 Heat of formation + Delta-G solvation = 5.436438 kcal Electronic energy + Delta-G solvation = -17445.896805 eV Core-core repulsion = 14664.619584 eV Total energy + Delta-G solvation = -2781.277221 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.90543 -38.00946 -36.02569 -34.69113 -32.57218 -30.90801 -30.05703 -28.54720 -27.24397 -23.91382 -22.46470 -21.78893 -20.58684 -19.26926 -18.34404 -17.17655 -16.30658 -15.77301 -15.31117 -15.08791 -14.39507 -14.26750 -14.01853 -13.65486 -13.56811 -12.90325 -12.58552 -12.50893 -12.03689 -11.65905 -11.21185 -11.03896 -10.86970 -10.66932 -10.36650 -10.18232 -9.94283 -9.54802 -9.07427 -8.71468 -8.19382 -7.74392 -7.06461 -6.25290 -4.29235 1.38831 1.90068 3.23556 3.32454 3.37577 3.39588 3.61233 4.04545 4.30103 4.58349 4.97496 5.10355 5.23321 5.30237 5.44748 5.57975 5.76037 5.89254 6.00720 6.14905 6.19055 6.36018 6.49882 6.68400 6.74598 6.79985 6.86166 7.06222 7.33384 7.41834 7.63329 7.68071 7.87221 7.97006 8.06183 8.30362 8.77037 9.34190 10.86319 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.026993 B = 0.006916 C = 0.006393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.052676 B = 4047.666099 C = 4378.413954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.080 3.920 3 Si 0.871 3.129 4 H -0.272 1.272 5 H -0.287 1.287 6 H -0.253 1.253 7 C -0.517 4.517 8 H 0.074 0.926 9 C 0.069 3.931 10 H 0.068 0.932 11 C 0.063 3.937 12 N -0.856 5.856 13 C 0.149 3.851 14 C -0.222 4.222 15 C -0.118 4.118 16 C 0.101 3.899 17 C -0.138 4.138 18 C -0.102 4.102 19 C -0.181 4.181 20 C 0.141 3.859 21 O -0.498 6.498 22 N -0.591 5.591 23 H 0.410 0.590 24 H 0.268 0.732 25 H 0.012 0.988 26 H 0.074 0.926 27 H 0.328 0.672 28 H 0.333 0.667 29 H 0.140 0.860 30 H 0.115 0.885 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.652 -8.537 -2.273 13.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.124 4.124 3 Si 0.697 3.303 4 H -0.197 1.197 5 H -0.214 1.214 6 H -0.177 1.177 7 C -0.555 4.555 8 H 0.092 0.908 9 C 0.049 3.951 10 H 0.086 0.914 11 C -0.067 4.067 12 N -0.384 5.384 13 C 0.041 3.959 14 C -0.245 4.245 15 C -0.124 4.124 16 C -0.007 4.007 17 C -0.159 4.159 18 C -0.121 4.121 19 C -0.201 4.201 20 C 0.096 3.904 21 O -0.308 6.308 22 N -0.194 5.194 23 H 0.247 0.753 24 H 0.078 0.922 25 H 0.030 0.970 26 H 0.093 0.907 27 H 0.139 0.861 28 H 0.145 0.855 29 H 0.158 0.842 30 H 0.133 0.867 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 9.853 -7.572 -2.161 12.613 hybrid contribution -0.423 -0.398 0.453 0.737 sum 9.430 -7.971 -1.708 12.465 Atomic orbital electron populations 1.69882 1.06399 1.27516 1.48673 1.25031 0.94758 0.99108 0.93518 0.86920 0.80704 0.83171 0.79540 1.19702 1.21360 1.17736 1.20698 0.87407 0.95027 1.52330 0.90758 1.18201 0.96445 0.91273 0.89216 0.91443 1.22309 0.85756 0.98635 1.00030 1.58877 1.07785 1.60499 1.11273 1.21149 0.95006 0.84542 0.95219 1.21206 1.11814 0.95908 0.95608 1.19514 1.03957 0.94892 0.94000 1.18082 1.00838 0.92559 0.89225 1.19950 1.05049 0.91757 0.99122 1.20449 1.00318 0.98969 0.92348 1.20959 1.06734 0.92398 1.00011 1.17834 0.97851 0.88414 0.86289 1.84753 1.43096 1.67374 1.35592 1.41938 1.55543 1.07902 1.14067 0.75291 0.92220 0.96987 0.90744 0.86140 0.85532 0.84193 0.86677 0.86015 0.86115 0.75871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.90 13.96 55.43 0.77 -25.13 16 2 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 3 Si 0.87 20.56 26.99 -169.99 -4.59 15.97 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.25 -5.81 6.82 56.52 0.39 -5.43 16 7 C -0.52 -13.62 8.84 -34.44 -0.30 -13.93 16 8 H 0.07 2.16 8.06 -52.49 -0.42 1.74 16 9 C 0.07 1.53 1.99 -92.93 -0.19 1.34 16 10 H 0.07 1.58 5.29 -51.93 -0.27 1.30 16 11 C 0.06 1.23 6.06 -3.82 -0.02 1.21 16 12 N -0.86 -14.40 9.62 -10.37 -0.10 -14.50 16 13 C 0.15 3.04 4.85 -81.73 -0.40 2.65 16 14 C -0.22 -4.55 10.95 -37.68 -0.41 -4.96 16 15 C -0.12 -2.21 6.32 -105.03 -0.66 -2.88 16 16 C 0.10 1.75 7.27 -84.00 -0.61 1.14 16 17 C -0.14 -2.00 10.07 -39.41 -0.40 -2.39 16 18 C -0.10 -1.34 10.01 -39.57 -0.40 -1.74 16 19 C -0.18 -2.58 9.97 -39.42 -0.39 -2.97 16 20 C 0.14 2.34 6.74 -38.94 -0.26 2.08 16 21 O -0.50 -7.57 13.51 -19.36 -0.26 -7.83 16 22 N -0.59 -10.45 5.84 -6.95 -0.04 -10.49 16 23 H 0.41 6.40 7.88 -40.82 -0.32 6.08 16 24 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 25 H 0.01 0.22 7.08 -51.93 -0.37 -0.15 16 26 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 27 H 0.33 4.60 9.08 -39.29 -0.36 4.24 16 28 H 0.33 5.45 8.09 -39.29 -0.32 5.13 16 29 H 0.14 2.82 8.06 -52.49 -0.42 2.40 16 30 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 31 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 32 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 33 H 0.39 4.11 9.06 45.56 0.41 4.52 16 LS Contribution 282.70 15.07 4.26 4.26 Total: -1.00 -30.71 282.70 -7.01 -37.72 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: -2.91 Total: 18.37 kcal Atomic # 6 Polarization: -14.23 SS G_CDS: -4.14 Total: -18.37 kcal Atomic # 7 Polarization: -50.75 SS G_CDS: 0.63 Total: -50.12 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: -0.26 Total: -7.83 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -4.59 Total: 15.97 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -30.71 -7.01 -37.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261072351.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.157 kcal (2) G-P(sol) polarization free energy of solvation -30.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds