Wall clock time and date at job start Mon Mar 30 2020 04:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 119.99889 * 2 1 4 4 H 1.48503 * 109.47287 * 264.85415 * 3 2 1 5 5 H 1.48499 * 109.46887 * 24.85692 * 3 2 1 6 6 H 1.48500 * 109.46993 * 144.85654 * 3 2 1 7 7 C 1.37882 * 119.99962 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99740 * 4.80091 * 7 2 1 9 9 C 1.50700 * 119.99651 * 184.80165 * 7 2 1 10 10 H 1.08996 * 109.47305 * 335.01276 * 9 7 2 11 11 C 1.52997 * 109.46916 * 95.01608 * 9 7 2 12 12 N 1.46906 * 109.47037 * 185.45920 * 11 9 7 13 13 C 1.50699 * 109.46914 * 215.01619 * 9 7 2 14 14 C 1.34207 * 125.05391 * 94.72198 * 13 9 7 15 15 C 1.46491 * 106.99215 * 179.86078 * 14 13 9 16 16 C 1.40569 * 106.09525 * 0.39491 * 15 14 13 17 17 C 1.39179 * 119.46459 * 179.78248 * 16 15 14 18 18 C 1.37762 * 120.02278 * 359.97438 * 17 16 15 19 19 C 1.38742 * 120.72135 * 0.02562 * 18 17 16 20 20 C 1.38159 * 120.31713 * 359.97265 * 19 18 17 21 21 O 1.35879 * 120.22112 * 180.02562 * 20 19 18 22 22 N 1.36938 * 125.04877 * 275.02712 * 13 9 7 23 23 H 0.96998 * 125.07217 * 0.02562 * 22 13 9 24 24 H 0.96999 * 120.00361 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47250 * 65.46057 * 11 9 7 26 26 H 1.08996 * 109.47105 * 305.45640 * 11 9 7 27 27 H 1.00894 * 111.00053 * 179.97438 * 12 11 9 28 28 H 1.00898 * 110.99692 * 303.95736 * 12 11 9 29 29 H 1.07996 * 126.50146 * 359.97438 * 14 13 9 30 30 H 1.07996 * 119.98543 * 179.97438 * 17 16 15 31 31 H 1.08000 * 119.63574 * 179.97438 * 18 17 16 32 32 H 1.07999 * 119.84254 * 180.02562 * 19 18 17 33 33 H 0.96703 * 114.00519 * 89.99905 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6054 1.9837 -1.3944 5 1 1.3964 2.6816 0.5885 6 1 3.4881 1.4740 0.8059 7 6 2.0046 -1.1941 -0.0005 8 1 1.4674 -2.1277 -0.0792 9 6 3.5076 -1.1964 0.1087 10 1 3.9000 -0.2479 -0.2581 11 6 3.9122 -1.3839 1.5722 12 7 5.3703 -1.2557 1.6974 13 6 4.0695 -2.3252 -0.7165 14 6 4.5046 -2.2132 -1.9811 15 6 4.9660 -3.5408 -2.3943 16 6 4.7522 -4.3878 -1.2930 17 6 5.0942 -5.7336 -1.3879 18 6 5.6371 -6.2262 -2.5543 19 6 5.8499 -5.3941 -3.6439 20 6 5.5184 -4.0547 -3.5737 21 8 5.7272 -3.2416 -4.6422 22 7 4.2064 -3.6191 -0.2894 23 1 3.9560 -3.9455 0.5890 24 1 -0.4850 0.8400 -0.0004 25 1 3.6041 -2.3732 1.9105 26 1 3.4268 -0.6233 2.1837 27 1 5.6628 -1.3753 2.6556 28 1 5.8440 -1.9077 1.0903 29 1 4.5147 -1.3144 -2.5798 30 1 4.9340 -6.3918 -0.5469 31 1 5.9006 -7.2715 -2.6210 32 1 6.2759 -5.7954 -4.5515 33 1 4.9773 -3.1910 -5.2506 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261072351.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:49 Heat of formation + Delta-G solvation = -18.823713 kcal Electronic energy + Delta-G solvation = -17446.948804 eV Core-core repulsion = 14664.619584 eV Total energy + Delta-G solvation = -2782.329220 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.24906 -39.26122 -37.38922 -36.10076 -34.50444 -32.33736 -31.59784 -29.80586 -28.69362 -25.76713 -23.83060 -23.06755 -21.98590 -20.80842 -19.59402 -19.20085 -17.62577 -17.09008 -16.84027 -16.32383 -15.94152 -15.64787 -15.40369 -15.19000 -14.94607 -14.68687 -14.22703 -13.87864 -13.47201 -13.13048 -12.82710 -12.52376 -12.34537 -12.07385 -11.99226 -11.82348 -11.52087 -11.47579 -10.78644 -10.40990 -9.59994 -9.03336 -8.43873 -8.36173 -6.43108 0.17101 0.70016 1.35398 1.38567 1.50518 1.87092 2.25839 2.31081 2.86127 2.99527 3.43636 3.76499 3.86819 4.10802 4.28233 4.30506 4.39319 4.48188 4.53092 4.70439 4.95262 5.01845 5.04877 5.13056 5.27019 5.49736 5.57659 5.60853 5.82388 5.94391 6.10345 6.22018 6.29033 6.58493 6.64056 6.75423 6.93744 7.23251 8.79202 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.026993 B = 0.006916 C = 0.006393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.052676 B = 4047.666099 C = 4378.413954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C 0.027 3.973 3 Si 0.933 3.067 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.241 1.241 7 C -0.512 4.512 8 H 0.034 0.966 9 C 0.073 3.927 10 H 0.056 0.944 11 C 0.074 3.926 12 N -0.853 5.853 13 C 0.130 3.870 14 C -0.241 4.241 15 C -0.152 4.152 16 C 0.091 3.909 17 C -0.142 4.142 18 C -0.086 4.086 19 C -0.176 4.176 20 C 0.126 3.874 21 O -0.509 6.509 22 N -0.585 5.585 23 H 0.418 0.582 24 H 0.269 0.731 25 H 0.023 0.977 26 H 0.061 0.939 27 H 0.347 0.653 28 H 0.338 0.662 29 H 0.129 0.871 30 H 0.144 0.856 31 H 0.164 0.836 32 H 0.149 0.851 33 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.907 -10.300 -2.417 15.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.172 4.172 3 Si 0.757 3.243 4 H -0.195 1.195 5 H -0.211 1.211 6 H -0.164 1.164 7 C -0.551 4.551 8 H 0.053 0.947 9 C 0.053 3.947 10 H 0.074 0.926 11 C -0.058 4.058 12 N -0.384 5.384 13 C 0.022 3.978 14 C -0.265 4.265 15 C -0.157 4.157 16 C -0.016 4.016 17 C -0.163 4.163 18 C -0.105 4.105 19 C -0.195 4.195 20 C 0.081 3.919 21 O -0.321 6.321 22 N -0.189 5.189 23 H 0.256 0.744 24 H 0.078 0.922 25 H 0.041 0.959 26 H 0.079 0.921 27 H 0.161 0.839 28 H 0.151 0.849 29 H 0.147 0.853 30 H 0.162 0.838 31 H 0.182 0.818 32 H 0.166 0.834 33 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 12.130 -9.358 -2.295 15.491 hybrid contribution -1.061 -0.047 0.383 1.129 sum 11.069 -9.405 -1.912 14.651 Atomic orbital electron populations 1.70011 1.08104 1.28400 1.51127 1.25798 0.95369 1.02579 0.93497 0.85931 0.79763 0.78968 0.79657 1.19515 1.21077 1.16394 1.20858 0.89812 0.93319 1.51096 0.94742 1.17996 0.93558 0.91806 0.91367 0.92626 1.21953 0.87440 0.98839 0.97519 1.58718 1.05971 1.60827 1.12888 1.20721 0.96608 0.85353 0.95167 1.21319 1.12468 0.96865 0.95842 1.19732 1.05902 0.94305 0.95795 1.18469 1.00948 0.93662 0.88551 1.20374 1.04474 0.90651 1.00753 1.20998 0.97748 1.00775 0.90993 1.21348 1.05404 0.91308 1.01482 1.18103 0.98185 0.89577 0.86030 1.84697 1.44257 1.67547 1.35622 1.41773 1.55566 1.06997 1.14609 0.74396 0.92164 0.95857 0.92060 0.83922 0.84940 0.85261 0.83815 0.81813 0.83373 0.73894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.69 13.96 21.45 0.30 -56.39 16 2 C 0.03 1.50 5.47 84.66 0.46 1.97 16 3 Si 0.93 43.35 26.99 68.60 1.85 45.20 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 6 H -0.24 -10.58 6.82 99.48 0.68 -9.90 16 7 C -0.51 -28.02 8.84 25.60 0.23 -27.79 16 8 H 0.03 2.11 8.06 -2.91 -0.02 2.08 16 9 C 0.07 3.28 1.99 -12.29 -0.02 3.25 16 10 H 0.06 2.62 5.29 -2.39 -0.01 2.60 16 11 C 0.07 2.82 6.06 86.30 0.52 3.34 16 12 N -0.85 -27.36 9.62 -186.71 -1.80 -29.16 16 13 C 0.13 5.40 4.85 40.84 0.20 5.60 16 14 C -0.24 -10.10 10.95 23.50 0.26 -9.84 16 15 C -0.15 -5.64 6.32 -20.13 -0.13 -5.76 16 16 C 0.09 3.04 7.27 39.02 0.28 3.32 16 17 C -0.14 -3.61 10.07 22.38 0.23 -3.39 16 18 C -0.09 -1.88 10.01 22.28 0.22 -1.66 16 19 C -0.18 -4.37 9.97 22.37 0.22 -4.14 16 20 C 0.13 3.99 6.74 22.68 0.15 4.14 16 21 O -0.51 -14.89 13.51 -92.19 -1.25 -16.14 16 22 N -0.59 -20.43 5.84 -175.89 -1.03 -21.46 16 23 H 0.42 12.73 7.88 -92.71 -0.73 12.00 16 24 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 25 H 0.02 0.83 7.08 -2.39 -0.02 0.82 16 26 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 27 H 0.35 8.95 9.08 -89.70 -0.81 8.14 16 28 H 0.34 10.56 8.09 -89.70 -0.73 9.83 16 29 H 0.13 5.46 8.06 -2.91 -0.02 5.44 16 30 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 31 H 0.16 2.25 8.06 -2.91 -0.02 2.22 16 32 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 33 H 0.40 8.23 9.06 -74.06 -0.67 7.55 16 Total: -1.00 -68.40 282.70 -1.08 -69.48 By element: Atomic # 1 Polarization: 41.22 SS G_CDS: -1.79 Total: 39.43 kcal Atomic # 6 Polarization: -33.59 SS G_CDS: 2.62 Total: -30.96 kcal Atomic # 7 Polarization: -104.48 SS G_CDS: -2.52 Total: -107.01 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -1.25 Total: -16.14 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.85 Total: 45.20 kcal Total: -68.40 -1.08 -69.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261072351.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.655 kcal (2) G-P(sol) polarization free energy of solvation -68.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds