Wall clock time and date at job start Mon Mar 30 2020 04:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00281 * 2 1 4 4 H 1.48493 * 109.46944 * 269.99965 * 3 2 1 5 5 H 1.48502 * 109.47044 * 30.00216 * 3 2 1 6 6 H 1.48494 * 109.47130 * 149.99750 * 3 2 1 7 7 C 1.37876 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00283 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00237 * 359.97438 * 7 2 1 10 10 H 1.09003 * 110.85761 * 297.67272 * 9 7 2 11 11 C 1.54639 * 110.96718 * 61.45386 * 9 7 2 12 12 C 1.51278 * 104.19413 * 142.91627 * 11 9 7 13 13 O 1.21280 * 124.93918 * 163.72572 * 12 11 9 14 14 N 1.34426 * 110.11766 * 343.75055 * 12 11 9 15 15 C 1.46499 * 124.34837 * 179.59107 * 14 12 11 16 16 C 1.50701 * 109.46992 * 90.02366 * 15 14 12 17 17 C 1.38234 * 119.61618 * 94.72669 * 16 15 14 18 18 C 1.38625 * 119.15939 * 179.75483 * 17 16 15 19 19 C 1.38671 * 118.41981 * 0.50932 * 18 17 16 20 20 C 1.38189 * 119.16446 * 359.73044 * 19 18 17 21 21 N 1.31854 * 119.61761 * 274.99970 * 16 15 14 22 22 C 1.46766 * 111.29818 * 359.85865 * 14 12 11 23 23 H 0.97000 * 119.99653 * 0.02562 * 1 2 3 24 24 H 1.08995 * 110.48125 * 24.24075 * 11 9 7 25 25 H 1.08995 * 110.48288 * 261.59797 * 11 9 7 26 26 H 1.09002 * 109.47391 * 330.02357 * 15 14 12 27 27 H 1.09001 * 109.46813 * 210.02413 * 15 14 12 28 28 H 1.08001 * 120.41868 * 359.97438 * 17 16 15 29 29 H 1.08003 * 120.79038 * 180.26667 * 18 17 16 30 30 H 1.08007 * 120.41963 * 179.75460 * 19 18 17 31 31 H 1.07999 * 119.61437 * 179.97438 * 20 19 18 32 32 H 1.08998 * 110.24604 * 135.75289 * 22 14 12 33 33 H 1.09002 * 110.24437 * 257.74993 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6476 -2.5990 0.9018 11 6 0.3762 -2.6331 -1.2687 12 6 0.4661 -4.0998 -1.6281 13 8 -0.2864 -4.6771 -2.3840 14 7 1.5011 -4.6703 -0.9875 15 6 1.8678 -6.0838 -1.1041 16 6 2.8435 -6.2576 -2.2394 17 6 4.2011 -6.2597 -1.9791 18 6 5.0901 -6.4254 -3.0298 19 6 4.5784 -6.5728 -4.3102 20 6 3.2089 -6.5554 -4.4942 21 7 2.3925 -6.4006 -3.4701 22 6 2.2126 -3.6964 -0.1512 23 1 -0.4849 0.8401 -0.0004 24 1 0.7760 -2.0176 -2.0745 25 1 -0.6553 -2.3560 -1.0515 26 1 0.9738 -6.6762 -1.2994 27 1 2.3288 -6.4175 -0.1744 28 1 4.5645 -6.1374 -0.9694 29 1 6.1559 -6.4355 -2.8558 30 1 5.2418 -6.7000 -5.1529 31 1 2.8025 -6.6692 -5.4884 32 1 2.4350 -4.1283 0.8245 33 1 3.1324 -3.3784 -0.6422 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261091059.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:11 Heat of formation + Delta-G solvation = -1.093122 kcal Electronic energy + Delta-G solvation = -17380.622332 eV Core-core repulsion = 14599.061968 eV Total energy + Delta-G solvation = -2781.560364 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.23478 -39.14008 -35.60682 -33.88468 -32.43683 -32.04125 -30.06923 -27.00903 -26.30487 -24.45856 -23.42034 -22.03293 -20.25512 -18.64916 -16.86578 -16.72175 -16.20938 -15.84600 -15.44294 -14.92231 -14.56742 -14.19356 -13.63297 -13.31752 -13.07084 -12.70314 -12.59059 -12.22208 -11.97202 -11.71016 -11.51504 -11.04422 -10.84562 -10.64005 -10.21904 -9.84179 -9.53093 -9.43329 -9.29528 -8.99994 -8.76444 -8.41651 -8.02806 -6.14316 -4.20067 1.11006 1.34097 3.25279 3.32805 3.34251 3.48384 3.60467 4.12479 4.34736 4.39695 4.76468 4.86088 5.05137 5.14840 5.19187 5.37250 5.56324 5.73317 5.74367 5.85039 5.96852 6.15611 6.17408 6.21839 6.46709 6.59827 6.72647 6.85855 7.31164 7.40866 7.60074 7.81745 7.88834 8.14457 8.20853 8.80889 9.07896 9.45964 10.95355 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.027794 B = 0.006105 C = 0.005576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.178638 B = 4585.258586 C = 5020.146990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.066 3.934 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.061 0.939 9 C 0.046 3.954 10 H 0.044 0.956 11 C -0.125 4.125 12 C 0.513 3.487 13 O -0.547 6.547 14 N -0.621 5.621 15 C 0.174 3.826 16 C 0.115 3.885 17 C -0.160 4.160 18 C -0.079 4.079 19 C -0.179 4.179 20 C 0.097 3.903 21 N -0.461 5.461 22 C 0.107 3.893 23 H 0.264 0.736 24 H 0.089 0.911 25 H 0.092 0.908 26 H 0.092 0.908 27 H 0.089 0.911 28 H 0.134 0.866 29 H 0.132 0.868 30 H 0.131 0.869 31 H 0.153 0.847 32 H 0.059 0.941 33 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.484 -11.204 -2.861 14.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.137 4.137 3 Si 0.723 3.277 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.559 4.559 8 H 0.080 0.920 9 C 0.027 3.973 10 H 0.062 0.938 11 C -0.166 4.166 12 C 0.303 3.697 13 O -0.424 6.424 14 N -0.355 5.355 15 C 0.050 3.950 16 C -0.024 4.024 17 C -0.180 4.180 18 C -0.105 4.105 19 C -0.199 4.199 20 C -0.060 4.060 21 N -0.170 5.170 22 C -0.015 4.015 23 H 0.073 0.927 24 H 0.108 0.892 25 H 0.111 0.889 26 H 0.111 0.889 27 H 0.107 0.893 28 H 0.152 0.848 29 H 0.150 0.850 30 H 0.149 0.851 31 H 0.170 0.830 32 H 0.077 0.923 33 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.020 -11.433 -3.383 14.369 hybrid contribution 1.587 0.978 0.008 1.865 sum 9.608 -10.454 -3.375 14.594 Atomic orbital electron populations 1.69956 1.05950 1.27023 1.49190 1.24979 0.94879 0.99262 0.94602 0.86545 0.79811 0.83189 0.78196 1.20617 1.21130 1.19806 1.20955 0.92870 0.89640 1.52391 0.92040 1.19602 0.92255 0.91570 0.93859 0.93762 1.22365 1.03810 0.88989 1.01393 1.21912 0.78682 0.91105 0.78008 1.90611 1.44861 1.70405 1.36533 1.48429 1.31377 1.07889 1.47818 1.20062 0.97302 0.83762 0.93841 1.21862 0.92864 0.94366 0.93301 1.22005 0.93924 1.01540 1.00562 1.21543 1.00148 0.96132 0.92691 1.22132 0.97065 1.02745 0.97957 1.22805 0.90013 0.95141 0.98047 1.67611 1.40106 1.10012 0.99245 1.22404 0.96764 0.89757 0.92584 0.92655 0.89242 0.88938 0.88923 0.89266 0.84787 0.84996 0.85073 0.82998 0.92289 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.31 12.40 55.43 0.69 -23.62 16 2 C 0.07 1.73 5.34 -17.82 -0.10 1.64 16 3 Si 0.89 20.32 29.54 -169.99 -5.02 15.30 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.52 -13.26 8.43 -34.44 -0.29 -13.55 16 8 H 0.06 1.52 7.66 -52.49 -0.40 1.12 16 9 C 0.05 1.08 3.06 -90.23 -0.28 0.80 16 10 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 11 C -0.13 -3.00 5.46 -26.74 -0.15 -3.15 16 12 C 0.51 11.77 8.02 -10.86 -0.09 11.69 16 13 O -0.55 -13.92 17.59 5.56 0.10 -13.82 16 14 N -0.62 -12.01 2.92 -173.90 -0.51 -12.52 16 15 C 0.17 2.77 6.24 -5.19 -0.03 2.74 16 16 C 0.12 1.82 6.36 -82.58 -0.53 1.30 16 17 C -0.16 -2.05 9.72 -39.44 -0.38 -2.43 16 18 C -0.08 -0.88 10.18 -39.28 -0.40 -1.28 16 19 C -0.18 -2.01 10.11 -39.44 -0.40 -2.41 16 20 C 0.10 1.34 11.18 -17.55 -0.20 1.14 16 21 N -0.46 -7.98 10.27 -9.47 -0.10 -8.07 16 22 C 0.11 2.05 6.90 -3.22 -0.02 2.02 16 23 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 24 H 0.09 2.27 7.89 -51.93 -0.41 1.86 16 25 H 0.09 2.35 7.98 -51.93 -0.41 1.94 16 26 H 0.09 1.57 7.93 -51.93 -0.41 1.15 16 27 H 0.09 1.09 8.04 -51.93 -0.42 0.67 16 28 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 29 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 30 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 31 H 0.15 1.71 8.06 -52.49 -0.42 1.28 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.06 1.14 7.77 -51.93 -0.40 0.73 16 LS Contribution 289.14 15.07 4.36 4.36 Total: -1.00 -31.28 289.14 -7.47 -38.74 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -4.13 Total: 1.12 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -2.85 Total: -1.48 kcal Atomic # 7 Polarization: -44.30 SS G_CDS: 0.08 Total: -44.22 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.10 Total: -13.82 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.28 -7.47 -38.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261091059.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.650 kcal (2) G-P(sol) polarization free energy of solvation -31.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds