Wall clock time and date at job start Mon Mar 30 2020 04:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00281 * 2 1 4 4 H 1.48493 * 109.46944 * 269.99965 * 3 2 1 5 5 H 1.48502 * 109.47044 * 30.00216 * 3 2 1 6 6 H 1.48494 * 109.47130 * 149.99750 * 3 2 1 7 7 C 1.37876 * 119.99782 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00283 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00237 * 359.97438 * 7 2 1 10 10 H 1.09003 * 110.85761 * 297.67272 * 9 7 2 11 11 C 1.54639 * 110.96718 * 61.45386 * 9 7 2 12 12 C 1.51278 * 104.19413 * 142.91627 * 11 9 7 13 13 O 1.21280 * 124.93918 * 163.72572 * 12 11 9 14 14 N 1.34426 * 110.11766 * 343.75055 * 12 11 9 15 15 C 1.46499 * 124.34837 * 179.59107 * 14 12 11 16 16 C 1.50701 * 109.46992 * 90.02366 * 15 14 12 17 17 C 1.38234 * 119.61618 * 94.72669 * 16 15 14 18 18 C 1.38625 * 119.15939 * 179.75483 * 17 16 15 19 19 C 1.38671 * 118.41981 * 0.50932 * 18 17 16 20 20 C 1.38189 * 119.16446 * 359.73044 * 19 18 17 21 21 N 1.31854 * 119.61761 * 274.99970 * 16 15 14 22 22 C 1.46766 * 111.29818 * 359.85865 * 14 12 11 23 23 H 0.97000 * 119.99653 * 0.02562 * 1 2 3 24 24 H 1.08995 * 110.48125 * 24.24075 * 11 9 7 25 25 H 1.08995 * 110.48288 * 261.59797 * 11 9 7 26 26 H 1.09002 * 109.47391 * 330.02357 * 15 14 12 27 27 H 1.09001 * 109.46813 * 210.02413 * 15 14 12 28 28 H 1.08001 * 120.41868 * 359.97438 * 17 16 15 29 29 H 1.08003 * 120.79038 * 180.26667 * 18 17 16 30 30 H 1.08007 * 120.41963 * 179.75460 * 19 18 17 31 31 H 1.07999 * 119.61437 * 179.97438 * 20 19 18 32 32 H 1.08998 * 110.24604 * 135.75289 * 22 14 12 33 33 H 1.09002 * 110.24437 * 257.74993 * 22 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 1 0.6476 -2.5990 0.9018 11 6 0.3762 -2.6331 -1.2687 12 6 0.4661 -4.0998 -1.6281 13 8 -0.2864 -4.6771 -2.3840 14 7 1.5011 -4.6703 -0.9875 15 6 1.8678 -6.0838 -1.1041 16 6 2.8435 -6.2576 -2.2394 17 6 4.2011 -6.2597 -1.9791 18 6 5.0901 -6.4254 -3.0298 19 6 4.5784 -6.5728 -4.3102 20 6 3.2089 -6.5554 -4.4942 21 7 2.3925 -6.4006 -3.4701 22 6 2.2126 -3.6964 -0.1512 23 1 -0.4849 0.8401 -0.0004 24 1 0.7760 -2.0176 -2.0745 25 1 -0.6553 -2.3560 -1.0515 26 1 0.9738 -6.6762 -1.2994 27 1 2.3288 -6.4175 -0.1744 28 1 4.5645 -6.1374 -0.9694 29 1 6.1559 -6.4355 -2.8558 30 1 5.2418 -6.7000 -5.1529 31 1 2.8025 -6.6692 -5.4884 32 1 2.4350 -4.1283 0.8245 33 1 3.1324 -3.3784 -0.6422 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261091059.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:39:11 Heat of formation + Delta-G solvation = -20.887833 kcal Electronic energy + Delta-G solvation = -17381.480695 eV Core-core repulsion = 14599.061968 eV Total energy + Delta-G solvation = -2782.418727 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.48360 -40.63080 -37.43717 -35.49761 -33.80047 -33.24834 -31.53549 -28.79590 -27.75673 -26.21521 -24.39581 -23.14836 -22.08833 -20.29815 -18.62724 -18.00210 -17.36724 -17.18336 -16.84414 -16.39824 -16.35087 -15.75195 -14.91001 -14.54383 -14.46677 -14.24122 -14.08932 -13.99085 -13.44214 -13.01724 -12.88413 -12.71658 -12.60710 -12.47298 -12.10135 -11.34488 -11.28392 -10.80266 -10.74059 -10.44463 -10.34584 -9.96270 -9.58271 -8.14391 -6.25884 0.12672 0.41522 1.46265 1.48017 1.57246 1.68587 2.18804 2.45367 2.99760 3.18552 3.37457 3.72893 3.89317 4.03272 4.14285 4.26153 4.27069 4.44700 4.51313 4.56334 4.70518 4.76184 4.85295 4.90029 4.97078 5.22733 5.27489 5.43507 5.60171 5.77144 5.82424 5.83753 6.13911 6.28640 6.82886 7.13979 7.30212 7.44060 8.95255 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.027794 B = 0.006105 C = 0.005576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.178638 B = 4585.258586 C = 5020.146990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.015 3.985 3 Si 0.957 3.043 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.259 1.259 7 C -0.527 4.527 8 H 0.071 0.929 9 C 0.040 3.960 10 H 0.026 0.974 11 C -0.118 4.118 12 C 0.509 3.491 13 O -0.580 6.580 14 N -0.608 5.608 15 C 0.171 3.829 16 C 0.084 3.916 17 C -0.157 4.157 18 C -0.078 4.078 19 C -0.167 4.167 20 C 0.073 3.927 21 N -0.513 5.513 22 C 0.119 3.881 23 H 0.262 0.738 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.074 0.926 27 H 0.134 0.866 28 H 0.161 0.839 29 H 0.171 0.829 30 H 0.167 0.833 31 H 0.164 0.836 32 H 0.097 0.903 33 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.971 -11.881 -2.403 17.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.185 4.185 3 Si 0.783 3.217 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.183 1.183 7 C -0.566 4.566 8 H 0.090 0.910 9 C 0.021 3.979 10 H 0.044 0.956 11 C -0.159 4.159 12 C 0.299 3.701 13 O -0.461 6.461 14 N -0.340 5.340 15 C 0.049 3.951 16 C -0.055 4.055 17 C -0.177 4.177 18 C -0.104 4.104 19 C -0.187 4.187 20 C -0.084 4.084 21 N -0.223 5.223 22 C -0.002 4.002 23 H 0.071 0.929 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.152 0.848 28 H 0.179 0.821 29 H 0.188 0.812 30 H 0.184 0.816 31 H 0.181 0.819 32 H 0.115 0.885 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 11.556 -12.135 -2.901 17.006 hybrid contribution 0.550 1.130 -0.177 1.270 sum 12.106 -11.005 -3.077 16.648 Atomic orbital electron populations 1.70093 1.07481 1.27592 1.50582 1.25782 0.95556 1.02682 0.94506 0.85560 0.79006 0.79160 0.77978 1.20748 1.21363 1.18297 1.21336 0.93473 0.90441 1.51303 0.91047 1.19553 0.92832 0.93167 0.92376 0.95605 1.22151 1.02387 0.90026 1.01305 1.21637 0.79623 0.90625 0.78208 1.90583 1.46458 1.70844 1.38216 1.48370 1.29831 1.09537 1.46277 1.20358 0.97390 0.80854 0.96512 1.21813 0.94113 0.96887 0.92660 1.22296 0.92664 1.00241 1.02493 1.22051 1.01867 0.94466 0.91990 1.22527 0.96273 1.00352 0.99513 1.23163 0.91387 0.95924 0.97943 1.67492 1.42349 1.11769 1.00670 1.22300 0.95328 0.88155 0.94435 0.92911 0.91294 0.91570 0.90782 0.84839 0.82107 0.81190 0.81591 0.81901 0.88488 0.91497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.77 12.40 21.45 0.27 -51.50 16 2 C 0.01 0.76 5.34 84.65 0.45 1.21 16 3 Si 0.96 41.41 29.54 68.60 2.03 43.44 16 4 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 7 C -0.53 -26.57 8.43 25.60 0.22 -26.36 16 8 H 0.07 3.39 7.66 -2.91 -0.02 3.37 16 9 C 0.04 1.86 3.06 -10.54 -0.03 1.83 16 10 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 11 C -0.12 -5.89 5.46 30.59 0.17 -5.72 16 12 C 0.51 24.01 8.02 87.90 0.71 24.72 16 13 O -0.58 -30.74 17.59 -3.03 -0.05 -30.80 16 14 N -0.61 -22.97 2.92 -822.67 -2.40 -25.37 16 15 C 0.17 5.20 6.24 85.63 0.53 5.73 16 16 C 0.08 2.51 6.36 42.55 0.27 2.78 16 17 C -0.16 -3.44 9.72 22.36 0.22 -3.22 16 18 C -0.08 -1.40 10.18 22.47 0.23 -1.17 16 19 C -0.17 -3.20 10.11 22.36 0.23 -2.98 16 20 C 0.07 1.93 11.18 84.67 0.95 2.87 16 21 N -0.51 -17.65 10.27 -183.88 -1.89 -19.54 16 22 C 0.12 4.30 6.90 86.77 0.60 4.90 16 23 H 0.26 14.17 8.31 -92.71 -0.77 13.40 16 24 H 0.07 3.66 7.89 -2.39 -0.02 3.64 16 25 H 0.07 3.58 7.98 -2.39 -0.02 3.56 16 26 H 0.07 2.52 7.93 -2.39 -0.02 2.50 16 27 H 0.13 2.79 8.04 -2.39 -0.02 2.77 16 28 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 29 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 30 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 31 H 0.16 3.60 8.06 -2.91 -0.02 3.57 16 32 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 33 H 0.07 2.36 7.77 -2.39 -0.02 2.34 16 Total: -1.00 -70.37 289.14 3.58 -66.79 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 1.10 Total: 12.39 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: 4.53 Total: 4.60 kcal Atomic # 7 Polarization: -92.39 SS G_CDS: -4.02 Total: -96.41 kcal Atomic # 8 Polarization: -30.74 SS G_CDS: -0.05 Total: -30.80 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 2.03 Total: 43.44 kcal Total: -70.37 3.58 -66.79 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261091059.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.897 kcal (2) G-P(sol) polarization free energy of solvation -70.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds