Wall clock time and date at job start Mon Mar 30 2020 04:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 C 1.53002 * 109.47153 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.46715 * 304.99131 * 10 9 7 12 12 N 1.46894 * 109.47229 * 64.99752 * 10 9 7 13 13 C 1.50701 * 109.46676 * 184.99784 * 10 9 7 14 14 C 1.37980 * 119.93274 * 264.72450 * 13 10 9 15 15 C 1.38264 * 120.37368 * 179.62669 * 14 13 10 16 16 C 1.38435 * 119.82367 * 0.69894 * 15 14 13 17 17 C 1.37637 * 119.91538 * 359.62397 * 16 15 14 18 18 C 1.38944 * 120.80578 * 0.02562 * 17 16 15 19 19 N 1.39524 * 110.21970 * 180.02562 * 18 17 16 20 20 C 1.34370 * 112.25165 * 0.02562 * 19 18 17 21 21 O 1.21286 * 126.43716 * 179.97438 * 20 19 18 22 22 C 1.51133 * 132.85544 * 180.02562 * 17 16 15 23 23 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 25 25 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 26 26 H 1.00897 * 111.00410 * 60.00068 * 12 10 9 27 27 H 1.00904 * 110.99735 * 183.95782 * 12 10 9 28 28 H 1.08001 * 119.81186 * 359.97438 * 14 13 10 29 29 H 1.07999 * 120.08745 * 180.32913 * 15 14 13 30 30 H 1.08000 * 120.04024 * 179.60696 * 16 15 14 31 31 H 0.97002 * 123.87838 * 179.97438 * 19 18 17 32 32 H 1.09000 * 110.51529 * 298.61437 * 22 17 16 33 33 H 1.08999 * 110.50863 * 61.18803 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 6 2.2453 -3.6621 -0.0121 11 1 2.9262 -3.5533 -0.8563 12 7 3.0131 -3.6566 1.2402 13 6 1.4954 -4.9634 -0.1360 14 6 1.1735 -5.6830 0.9964 15 6 0.4790 -6.8742 0.8938 16 6 0.1170 -7.3549 -0.3529 17 6 0.4427 -6.6423 -1.4845 18 6 1.1340 -5.4404 -1.3941 19 7 1.3457 -4.9091 -2.6667 20 6 0.8325 -5.6869 -3.6348 21 8 0.8694 -5.4711 -4.8277 22 6 0.2004 -6.8838 -2.9566 23 1 -0.4850 -0.8400 0.0004 24 1 0.6281 -2.5591 0.8866 25 1 0.6207 -2.5548 -0.8933 26 1 2.4039 -3.7562 2.0383 27 1 3.7209 -4.3758 1.2335 28 1 1.4608 -5.3110 1.9687 29 1 0.2248 -7.4310 1.7836 30 1 -0.4200 -8.2881 -0.4374 31 1 1.8094 -4.0736 -2.8335 32 1 0.6858 -7.8055 -3.2774 33 1 -0.8685 -6.9232 -3.1663 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261093508.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:22 Heat of formation + Delta-G solvation = -11.512449 kcal Electronic energy + Delta-G solvation = -17429.253410 eV Core-core repulsion = 14647.241230 eV Total energy + Delta-G solvation = -2782.012180 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.41266 -38.62362 -36.17759 -35.27693 -32.84206 -31.41651 -29.41173 -28.21976 -27.65691 -24.21560 -22.34120 -21.91544 -21.02256 -19.76557 -17.84549 -16.81519 -16.60836 -15.96835 -15.75639 -15.29721 -14.56906 -14.12967 -13.83120 -13.67209 -13.32148 -13.16577 -13.05066 -12.61921 -12.30154 -11.64120 -11.59033 -10.99198 -10.90112 -10.78295 -10.47805 -10.16481 -10.15995 -9.98384 -8.79243 -8.48709 -8.30656 -8.10429 -7.86475 -6.30020 -3.97684 1.19432 1.35215 2.50683 3.13139 3.48096 3.50268 3.68737 3.79681 4.12238 4.37153 4.58934 4.83592 4.99665 5.10542 5.21964 5.26356 5.31091 5.44933 5.49110 5.74226 5.84813 5.96845 6.17313 6.34284 6.44173 6.61599 6.65018 6.86821 7.08124 7.14958 7.33665 7.75321 7.98142 8.01614 8.25415 8.56842 8.93551 9.71956 11.09762 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.023117 B = 0.006825 C = 0.005758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.919505 B = 4101.425085 C = 4861.868610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.010 3.990 3 Si 1.069 2.931 4 H -0.285 1.285 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.580 4.580 8 H 0.056 0.944 9 C 0.026 3.974 10 C 0.140 3.860 11 H 0.075 0.925 12 N -0.819 5.819 13 C -0.116 4.116 14 C -0.095 4.095 15 C -0.136 4.136 16 C -0.081 4.081 17 C -0.145 4.145 18 C 0.147 3.853 19 N -0.652 5.652 20 C 0.527 3.473 21 O -0.512 6.512 22 C -0.112 4.112 23 H 0.265 0.735 24 H 0.009 0.991 25 H 0.008 0.992 26 H 0.336 0.664 27 H 0.325 0.675 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.125 0.875 31 H 0.419 0.581 32 H 0.119 0.881 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.316 -16.205 0.627 16.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.193 4.193 3 Si 0.898 3.102 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.216 1.216 7 C -0.618 4.618 8 H 0.075 0.925 9 C -0.011 4.011 10 C 0.028 3.972 11 H 0.093 0.907 12 N -0.346 5.346 13 C -0.121 4.121 14 C -0.114 4.114 15 C -0.155 4.155 16 C -0.100 4.100 17 C -0.148 4.148 18 C 0.049 3.951 19 N -0.295 5.295 20 C 0.315 3.685 21 O -0.388 6.388 22 C -0.152 4.152 23 H 0.076 0.924 24 H 0.027 0.973 25 H 0.026 0.974 26 H 0.150 0.850 27 H 0.136 0.864 28 H 0.144 0.856 29 H 0.144 0.856 30 H 0.143 0.857 31 H 0.258 0.742 32 H 0.137 0.863 33 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.326 -13.749 -0.305 13.816 hybrid contribution -0.034 -2.233 0.180 2.240 sum 1.292 -15.982 -0.125 16.035 Atomic orbital electron populations 1.70803 1.06920 1.30301 1.47450 1.25827 0.96520 1.02730 0.94184 0.83530 0.74803 0.75375 0.76470 1.21039 1.21461 1.21613 1.21932 0.94648 0.90970 1.54265 0.92549 1.19242 0.93373 0.92456 0.96078 1.20568 0.94337 0.89660 0.92648 0.90727 1.58743 1.17726 1.54420 1.03747 1.20807 1.01814 0.99457 0.90028 1.20747 0.98364 0.94672 0.97620 1.20979 1.00528 0.96928 0.97024 1.20134 0.99895 0.99349 0.90617 1.19800 1.03762 0.96500 0.94741 1.17938 0.98246 0.93484 0.85398 1.43768 1.55204 1.25272 1.05223 1.20579 0.77638 0.84789 0.85534 1.90798 1.58765 1.75738 1.13450 1.21015 1.03847 0.98678 0.91616 0.92432 0.97325 0.97418 0.85016 0.86369 0.85582 0.85614 0.85741 0.74220 0.86268 0.86154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -28.20 13.65 55.43 0.76 -27.44 16 2 C 0.01 0.29 5.46 -17.82 -0.10 0.19 16 3 Si 1.07 25.70 29.90 -169.99 -5.08 20.62 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 6 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.58 -16.15 8.84 -34.44 -0.30 -16.45 16 8 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 9 C 0.03 0.63 3.92 -27.88 -0.11 0.52 16 10 C 0.14 2.68 2.86 -68.87 -0.20 2.48 16 11 H 0.07 1.48 7.85 -51.93 -0.41 1.07 16 12 N -0.82 -14.22 8.53 -5.66 -0.05 -14.27 16 13 C -0.12 -1.88 5.07 -104.31 -0.53 -2.41 16 14 C -0.10 -1.31 9.24 -39.67 -0.37 -1.67 16 15 C -0.14 -1.57 10.07 -39.50 -0.40 -1.96 16 16 C -0.08 -0.92 10.04 -39.73 -0.40 -1.31 16 17 C -0.14 -1.88 6.35 -104.37 -0.66 -2.55 16 18 C 0.15 2.29 6.82 -83.69 -0.57 1.72 16 19 N -0.65 -10.33 5.84 -9.70 -0.06 -10.39 16 20 C 0.53 8.09 8.71 -10.83 -0.09 8.00 16 21 O -0.51 -9.39 18.03 5.55 0.10 -9.29 16 22 C -0.11 -1.29 6.88 -28.48 -0.20 -1.48 16 23 H 0.27 8.14 7.22 -40.82 -0.29 7.85 16 24 H 0.01 0.22 8.01 -51.93 -0.42 -0.19 16 25 H 0.01 0.20 8.00 -51.93 -0.42 -0.21 16 26 H 0.34 5.48 7.20 -39.29 -0.28 5.19 16 27 H 0.32 4.68 9.06 -39.29 -0.36 4.32 16 28 H 0.13 1.57 6.26 -52.49 -0.33 1.24 16 29 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 30 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 31 H 0.42 6.81 8.66 -40.82 -0.35 6.46 16 32 H 0.12 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 283.93 15.07 4.28 4.28 Total: -1.00 -33.09 283.93 -7.72 -40.81 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -3.75 Total: 10.62 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: -3.92 Total: -14.93 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: 0.65 Total: -52.10 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.10 Total: -9.29 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -5.08 Total: 20.62 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -33.09 -7.72 -40.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261093508.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.299 kcal (2) G-P(sol) polarization free energy of solvation -33.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds