Wall clock time and date at job start Mon Mar 30 2020 04:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.47364 * 0.02562 * 3 2 1 5 5 H 1.48508 * 109.46883 * 120.00272 * 3 2 1 6 6 H 1.48497 * 109.46870 * 240.00082 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 H 1.07998 * 120.00063 * 179.72354 * 7 2 1 9 9 C 1.50706 * 120.00434 * 359.72891 * 7 2 1 10 10 C 1.53002 * 109.47153 * 180.02562 * 9 7 2 11 11 H 1.08998 * 109.46715 * 304.99131 * 10 9 7 12 12 N 1.46894 * 109.47229 * 64.99752 * 10 9 7 13 13 C 1.50701 * 109.46676 * 184.99784 * 10 9 7 14 14 C 1.37980 * 119.93274 * 264.72450 * 13 10 9 15 15 C 1.38264 * 120.37368 * 179.62669 * 14 13 10 16 16 C 1.38435 * 119.82367 * 0.69894 * 15 14 13 17 17 C 1.37637 * 119.91538 * 359.62397 * 16 15 14 18 18 C 1.38944 * 120.80578 * 0.02562 * 17 16 15 19 19 N 1.39524 * 110.21970 * 180.02562 * 18 17 16 20 20 C 1.34370 * 112.25165 * 0.02562 * 19 18 17 21 21 O 1.21286 * 126.43716 * 179.97438 * 20 19 18 22 22 C 1.51133 * 132.85544 * 180.02562 * 17 16 15 23 23 H 0.97000 * 120.00236 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46434 * 299.99667 * 9 7 2 25 25 H 1.08993 * 109.47348 * 59.99490 * 9 7 2 26 26 H 1.00897 * 111.00410 * 60.00068 * 12 10 9 27 27 H 1.00904 * 110.99735 * 183.95782 * 12 10 9 28 28 H 1.08001 * 119.81186 * 359.97438 * 14 13 10 29 29 H 1.07999 * 120.08745 * 180.32913 * 15 14 13 30 30 H 1.08000 * 120.04024 * 179.60696 * 16 15 14 31 31 H 0.97002 * 123.87838 * 179.97438 * 19 18 17 32 32 H 1.09000 * 110.51529 * 298.61437 * 22 17 16 33 33 H 1.08999 * 110.50863 * 61.18803 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1028 1.6964 -1.2125 7 6 2.0045 -1.1940 -0.0057 8 1 3.0845 -1.1940 -0.0103 9 6 1.2510 -2.4992 -0.0059 10 6 2.2453 -3.6621 -0.0121 11 1 2.9262 -3.5533 -0.8563 12 7 3.0131 -3.6566 1.2402 13 6 1.4954 -4.9634 -0.1360 14 6 1.1735 -5.6830 0.9964 15 6 0.4790 -6.8742 0.8938 16 6 0.1170 -7.3549 -0.3529 17 6 0.4427 -6.6423 -1.4845 18 6 1.1340 -5.4404 -1.3941 19 7 1.3457 -4.9091 -2.6667 20 6 0.8325 -5.6869 -3.6348 21 8 0.8694 -5.4711 -4.8277 22 6 0.2004 -6.8838 -2.9566 23 1 -0.4850 -0.8400 0.0004 24 1 0.6281 -2.5591 0.8866 25 1 0.6207 -2.5548 -0.8933 26 1 2.4039 -3.7562 2.0383 27 1 3.7209 -4.3758 1.2335 28 1 1.4608 -5.3110 1.9687 29 1 0.2248 -7.4310 1.7836 30 1 -0.4200 -8.2881 -0.4374 31 1 1.8094 -4.0736 -2.8335 32 1 0.6858 -7.8055 -3.2774 33 1 -0.8685 -6.9232 -3.1663 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261093508.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:13:22 Heat of formation + Delta-G solvation = -35.875830 kcal Electronic energy + Delta-G solvation = -17430.309885 eV Core-core repulsion = 14647.241230 eV Total energy + Delta-G solvation = -2783.068656 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.52757 -39.83332 -37.60797 -36.52010 -34.85139 -32.55650 -30.60755 -29.89249 -28.82354 -26.02983 -23.86774 -23.12238 -22.15318 -21.12821 -19.13492 -18.74147 -17.79412 -17.10387 -16.90297 -16.77569 -15.83508 -15.63204 -15.39692 -15.12044 -14.71654 -14.30341 -14.22002 -13.84069 -13.74958 -13.34073 -13.10182 -12.59943 -12.34339 -12.11158 -12.00101 -11.92213 -11.76117 -11.37093 -10.76498 -10.53005 -9.71255 -9.50143 -9.01482 -8.62280 -6.30172 0.14735 0.31005 1.37591 1.52036 1.60414 1.79404 1.98039 2.57942 2.75399 3.09393 3.19617 3.39073 3.75715 3.76116 4.01747 4.14882 4.29919 4.36385 4.46069 4.54981 4.70041 4.79133 4.94738 5.07521 5.12482 5.30228 5.43570 5.54034 5.59128 5.72392 6.02241 6.04579 6.26221 6.34579 6.62555 6.73728 6.80218 7.48061 8.77557 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.023117 B = 0.006825 C = 0.005758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.919505 B = 4101.425085 C = 4861.868610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.045 4.045 3 Si 1.116 2.884 4 H -0.287 1.287 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.586 4.586 8 H 0.052 0.948 9 C 0.035 3.965 10 C 0.155 3.845 11 H 0.059 0.941 12 N -0.828 5.828 13 C -0.141 4.141 14 C -0.102 4.102 15 C -0.127 4.127 16 C -0.068 4.068 17 C -0.142 4.142 18 C 0.117 3.883 19 N -0.661 5.661 20 C 0.517 3.483 21 O -0.553 6.553 22 C -0.098 4.098 23 H 0.251 0.749 24 H -0.012 1.012 25 H -0.018 1.018 26 H 0.342 0.658 27 H 0.344 0.656 28 H 0.134 0.866 29 H 0.162 0.838 30 H 0.168 0.832 31 H 0.408 0.592 32 H 0.153 0.847 33 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.327 -18.567 1.629 18.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.241 4.241 3 Si 0.938 3.062 4 H -0.213 1.213 5 H -0.195 1.195 6 H -0.199 1.199 7 C -0.624 4.624 8 H 0.070 0.930 9 C -0.003 4.003 10 C 0.043 3.957 11 H 0.077 0.923 12 N -0.358 5.358 13 C -0.146 4.146 14 C -0.121 4.121 15 C -0.145 4.145 16 C -0.086 4.086 17 C -0.145 4.145 18 C 0.020 3.980 19 N -0.302 5.302 20 C 0.307 3.693 21 O -0.432 6.432 22 C -0.136 4.136 23 H 0.061 0.939 24 H 0.006 0.994 25 H 0.000 1.000 26 H 0.157 0.843 27 H 0.158 0.842 28 H 0.152 0.848 29 H 0.180 0.820 30 H 0.185 0.815 31 H 0.244 0.756 32 H 0.170 0.830 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 1.351 -16.160 0.731 16.233 hybrid contribution -0.042 -1.578 -0.079 1.580 sum 1.309 -17.738 0.651 17.798 Atomic orbital electron populations 1.70938 1.07953 1.29457 1.49955 1.27303 0.96594 1.06711 0.93484 0.82941 0.74044 0.71425 0.77817 1.21259 1.19518 1.19863 1.22304 0.94647 0.92548 1.52902 0.92993 1.19045 0.93726 0.93830 0.93656 1.20028 0.93142 0.89620 0.92921 0.92291 1.58614 1.18242 1.55727 1.03222 1.20529 1.03727 0.98824 0.91507 1.20964 0.98616 0.95531 0.97014 1.21426 0.98598 0.95768 0.98729 1.20645 0.98347 1.00157 0.89481 1.20123 1.02844 0.95362 0.96173 1.18211 0.99910 0.95079 0.84838 1.43973 1.55114 1.25045 1.06068 1.21330 0.77172 0.85762 0.85035 1.90765 1.60488 1.76916 1.15043 1.21070 1.05018 0.97616 0.89929 0.93947 0.99418 0.99972 0.84342 0.84243 0.84789 0.82011 0.81497 0.75553 0.82974 0.83786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.78 13.65 21.45 0.29 -59.49 16 2 C -0.04 -2.64 5.46 84.65 0.46 -2.18 16 3 Si 1.12 52.06 29.90 68.60 2.05 54.11 16 4 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 5 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 7 C -0.59 -33.54 8.84 25.60 0.23 -33.32 16 8 H 0.05 2.97 7.74 -2.91 -0.02 2.94 16 9 C 0.03 1.78 3.92 29.85 0.12 1.89 16 10 C 0.16 6.11 2.86 44.17 0.13 6.23 16 11 H 0.06 2.45 7.85 -2.39 -0.02 2.43 16 12 N -0.83 -28.74 8.53 -171.81 -1.47 -30.20 16 13 C -0.14 -4.55 5.07 -19.66 -0.10 -4.65 16 14 C -0.10 -2.62 9.24 22.21 0.21 -2.41 16 15 C -0.13 -2.39 10.07 22.32 0.22 -2.17 16 16 C -0.07 -1.21 10.04 22.17 0.22 -0.98 16 17 C -0.14 -3.29 6.35 -19.70 -0.13 -3.41 16 18 C 0.12 3.60 6.82 38.35 0.26 3.86 16 19 N -0.66 -21.68 5.84 -303.22 -1.77 -23.45 16 20 C 0.52 15.87 8.71 87.94 0.77 16.64 16 21 O -0.55 -20.77 18.03 -3.05 -0.05 -20.83 16 22 C -0.10 -1.96 6.88 29.46 0.20 -1.76 16 23 H 0.25 16.14 7.22 -92.71 -0.67 15.47 16 24 H -0.01 -0.68 8.01 -2.39 -0.02 -0.70 16 25 H -0.02 -1.00 8.00 -2.39 -0.02 -1.02 16 26 H 0.34 11.07 7.20 -89.70 -0.65 10.42 16 27 H 0.34 9.66 9.06 -89.69 -0.81 8.85 16 28 H 0.13 3.11 6.26 -2.91 -0.02 3.09 16 29 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 30 H 0.17 1.60 8.06 -2.91 -0.02 1.58 16 31 H 0.41 14.37 8.66 -92.71 -0.80 13.57 16 32 H 0.15 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.14 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -74.85 283.93 0.65 -74.20 By element: Atomic # 1 Polarization: 28.92 SS G_CDS: -0.99 Total: 27.92 kcal Atomic # 6 Polarization: -24.85 SS G_CDS: 2.59 Total: -22.26 kcal Atomic # 7 Polarization: -110.20 SS G_CDS: -2.94 Total: -113.15 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.05 Total: -20.83 kcal Atomic # 14 Polarization: 52.06 SS G_CDS: 2.05 Total: 54.11 kcal Total: -74.85 0.65 -74.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261093508.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.324 kcal (2) G-P(sol) polarization free energy of solvation -74.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds