Wall clock time and date at job start Mon Mar 30 2020 03:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47308 * 2 1 4 4 H 1.08997 * 109.46815 * 175.55814 * 3 2 1 5 5 C 1.50700 * 109.47204 * 55.55736 * 3 2 1 6 6 H 1.08000 * 119.99904 * 245.86093 * 5 3 2 7 7 C 1.37880 * 119.99747 * 65.86998 * 5 3 2 8 8 N 1.31505 * 120.00397 * 5.31960 * 7 5 3 9 9 Si 1.86804 * 119.99744 * 185.60039 * 7 5 3 10 10 H 1.48500 * 109.46946 * 269.72457 * 9 7 5 11 11 H 1.48497 * 109.47083 * 29.71990 * 9 7 5 12 12 H 1.48491 * 109.47157 * 149.72168 * 9 7 5 13 13 C 1.52999 * 109.47005 * 295.55820 * 3 2 1 14 14 C 1.52590 * 109.24222 * 305.04931 * 13 3 2 15 15 C 1.53055 * 109.97856 * 169.67552 * 14 13 3 16 16 S 1.81667 * 108.96556 * 63.70565 * 15 14 13 17 17 O 1.42103 * 108.66351 * 191.35569 * 16 15 14 18 18 O 1.42099 * 108.66494 * 60.01415 * 16 15 14 19 19 C 1.81672 * 101.30895 * 305.68211 * 16 15 14 20 20 C 1.52586 * 109.24253 * 183.93682 * 13 3 2 21 21 H 1.09008 * 109.46841 * 304.98762 * 1 2 3 22 22 H 1.08996 * 109.46908 * 64.98346 * 1 2 3 23 23 H 1.08996 * 109.47498 * 184.98770 * 1 2 3 24 24 H 1.08999 * 109.46722 * 239.99408 * 2 1 3 25 25 H 1.09004 * 109.46750 * 120.00058 * 2 1 3 26 26 H 0.97007 * 119.99930 * 355.45764 * 8 7 5 27 27 H 1.08995 * 109.24151 * 64.49089 * 13 3 2 28 28 H 1.09001 * 109.38409 * 289.87237 * 14 13 3 29 29 H 1.09004 * 109.38482 * 49.55918 * 14 13 3 30 30 H 1.09001 * 109.57619 * 303.85557 * 15 14 13 31 31 H 1.08996 * 109.63077 * 183.59438 * 15 14 13 32 32 H 1.08996 * 109.55281 * 294.44238 * 19 16 15 33 33 H 1.09005 * 109.62666 * 174.19616 * 19 16 15 34 34 H 1.09003 * 109.38382 * 310.43965 * 20 13 3 35 35 H 1.08995 * 109.38727 * 70.12594 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1271 1.4434 0.0796 5 6 1.4499 2.1840 1.1717 6 1 0.7630 3.0003 1.0037 7 6 1.7871 1.8203 2.4583 8 7 2.7016 0.8977 2.6626 9 14 0.9390 2.6326 3.9110 10 1 1.7055 3.8363 4.3219 11 1 -0.4372 3.0315 3.5211 12 1 0.8747 1.6759 5.0449 13 6 1.6233 2.1307 -1.3013 14 6 2.1173 1.3065 -2.4867 15 6 1.4975 1.8322 -3.7837 16 16 2.0717 3.5325 -4.0656 17 8 1.2995 4.1056 -5.1119 18 8 3.4888 3.5225 -4.1703 19 6 1.6101 4.3287 -2.4993 20 6 2.2171 3.5358 -1.3396 21 1 -0.3633 0.5893 0.8420 22 1 -0.3633 0.4346 -0.9312 23 1 -0.3634 -1.0237 0.0893 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 3.0917 0.4263 1.9098 27 1 0.5362 2.1989 -1.3394 28 1 3.2032 1.3773 -2.5491 29 1 1.8317 0.2639 -2.3465 30 1 0.4109 1.8235 -3.6989 31 1 1.8034 1.2008 -4.6178 32 1 0.5245 4.3425 -2.4031 33 1 1.9908 5.3500 -2.4816 34 1 2.0009 4.0455 -0.4006 35 1 3.2967 3.4689 -1.4729 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261096263.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:39 Heat of formation + Delta-G solvation = -98.164222 kcal Electronic energy + Delta-G solvation = -17135.675081 eV Core-core repulsion = 14453.056598 eV Total energy + Delta-G solvation = -2682.618483 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.24303 -36.80079 -35.88872 -34.16966 -31.82933 -31.08003 -28.25501 -25.17722 -23.90047 -22.90791 -20.96213 -18.96166 -18.65406 -16.77288 -16.69400 -16.15686 -15.55701 -14.36178 -14.17343 -13.94544 -13.74814 -13.53379 -13.02969 -12.44624 -12.40358 -12.24941 -11.96906 -11.87531 -11.57140 -11.41478 -11.09301 -10.84423 -10.78188 -10.67471 -10.42429 -10.17096 -9.96651 -9.76342 -9.55927 -9.31356 -8.46584 -8.28625 -6.35533 -4.08423 0.19805 2.80562 3.38671 3.41506 3.56354 3.76613 4.11489 4.47491 4.78172 4.81962 4.93515 5.04602 5.31856 5.36228 5.50057 5.62134 5.83546 5.92194 6.09713 6.13841 6.19725 6.28000 6.41115 6.60429 6.67909 6.79259 6.81943 7.11736 7.28287 7.42573 7.52276 8.17663 8.40149 8.84374 9.61512 11.00974 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.035033 B = 0.007075 C = 0.006534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.044528 B = 3956.796795 C = 4283.955176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.124 4.124 3 C 0.041 3.959 4 H 0.024 0.976 5 C -0.587 4.587 6 H 0.050 0.950 7 C 0.022 3.978 8 N -0.913 5.913 9 Si 1.062 2.938 10 H -0.289 1.289 11 H -0.289 1.289 12 H -0.286 1.286 13 C -0.091 4.091 14 C -0.116 4.116 15 C -0.596 4.596 16 S 2.408 3.592 17 O -0.959 6.959 18 O -0.944 6.944 19 C -0.594 4.594 20 C -0.100 4.100 21 H 0.069 0.931 22 H 0.034 0.966 23 H 0.024 0.976 24 H 0.030 0.970 25 H 0.061 0.939 26 H 0.273 0.727 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.128 0.872 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.127 0.873 34 H 0.103 0.897 35 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.431 2.059 -9.266 10.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.162 4.162 3 C 0.022 3.978 4 H 0.042 0.958 5 C -0.625 4.625 6 H 0.068 0.932 7 C -0.183 4.183 8 N -0.549 5.549 9 Si 0.891 3.109 10 H -0.216 1.216 11 H -0.216 1.216 12 H -0.211 1.211 13 C -0.110 4.110 14 C -0.154 4.154 15 C -0.726 4.726 16 S 2.592 3.408 17 O -0.957 6.957 18 O -0.941 6.941 19 C -0.724 4.724 20 C -0.138 4.138 21 H 0.088 0.912 22 H 0.053 0.947 23 H 0.043 0.957 24 H 0.048 0.952 25 H 0.080 0.920 26 H 0.085 0.915 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.109 0.891 30 H 0.147 0.853 31 H 0.144 0.856 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.121 0.879 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -3.032 2.498 -8.378 9.253 hybrid contribution -0.528 -0.388 -1.060 1.246 sum -3.559 2.111 -9.438 10.305 Atomic orbital electron populations 1.21649 0.97139 0.98846 1.01427 1.21744 0.95617 0.99563 0.99289 1.18814 0.96282 0.91498 0.91177 0.95836 1.21852 1.30323 1.18550 0.91788 0.93164 1.25637 0.95569 0.96904 1.00152 1.70757 1.24313 1.24077 1.35776 0.83642 0.75568 0.75859 0.75849 1.21614 1.21551 1.21134 1.21288 1.00409 0.93269 0.95990 1.21636 1.00719 1.02837 0.90207 1.30164 1.11807 1.22901 1.07708 1.08200 0.75908 0.79113 0.77613 1.93549 1.72740 1.76336 1.53038 1.93560 1.28102 1.86224 1.86229 1.30186 1.11416 1.11771 1.19041 1.21367 0.99807 0.95345 0.97323 0.91204 0.94658 0.95677 0.95177 0.92032 0.91504 0.90981 0.90449 0.89055 0.85320 0.85621 0.85335 0.85503 0.87895 0.90823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 9.32 37.16 0.35 -2.19 16 2 C -0.12 -2.55 5.05 -26.73 -0.14 -2.69 16 3 C 0.04 0.88 1.30 -91.77 -0.12 0.76 16 4 H 0.02 0.56 7.65 -51.93 -0.40 0.16 16 5 C -0.59 -14.35 5.92 -34.44 -0.20 -14.55 16 6 H 0.05 1.22 7.28 -52.49 -0.38 0.84 16 7 C 0.02 0.57 5.29 -17.82 -0.09 0.48 16 8 N -0.91 -25.64 13.19 55.43 0.73 -24.90 16 9 Si 1.06 23.75 29.91 -169.99 -5.08 18.67 16 10 H -0.29 -6.35 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 12 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 13 C -0.09 -1.56 1.13 -91.04 -0.10 -1.66 16 14 C -0.12 -1.70 4.83 -26.91 -0.13 -1.83 16 15 C -0.60 -7.07 6.35 37.19 0.24 -6.84 16 16 S 2.41 32.35 5.31 -107.50 -0.57 31.78 16 17 O -0.96 -15.27 18.10 -57.81 -1.05 -16.32 16 18 O -0.94 -15.79 17.94 -57.81 -1.04 -16.83 16 19 C -0.59 -7.56 6.35 37.18 0.24 -7.32 16 20 C -0.10 -1.62 4.95 -26.92 -0.13 -1.75 16 21 H 0.07 1.48 6.90 -51.92 -0.36 1.12 16 22 H 0.03 0.59 6.90 -51.93 -0.36 0.23 16 23 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.03 0.54 5.86 -51.93 -0.30 0.24 16 25 H 0.06 1.43 6.18 -51.93 -0.32 1.11 16 26 H 0.27 7.57 5.63 -40.82 -0.23 7.34 16 27 H 0.07 1.20 6.83 -51.93 -0.35 0.84 16 28 H 0.08 1.14 8.01 -51.93 -0.42 0.73 16 29 H 0.09 1.32 5.65 -51.93 -0.29 1.03 16 30 H 0.13 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.13 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.13 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.13 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.10 1.84 6.72 -51.93 -0.35 1.49 16 35 H 0.07 1.19 8.01 -51.93 -0.42 0.78 16 LS Contribution 278.58 15.07 4.20 4.20 Total: -1.00 -31.20 278.58 -8.00 -39.20 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -5.09 Total: 1.79 kcal Atomic # 6 Polarization: -37.49 SS G_CDS: -0.10 Total: -37.59 kcal Atomic # 7 Polarization: -25.64 SS G_CDS: 0.73 Total: -24.90 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -2.08 Total: -33.14 kcal Atomic # 14 Polarization: 23.75 SS G_CDS: -5.08 Total: 18.67 kcal Atomic # 16 Polarization: 32.35 SS G_CDS: -0.57 Total: 31.78 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -31.20 -8.00 -39.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261096263.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.965 kcal (2) G-P(sol) polarization free energy of solvation -31.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds