Wall clock time and date at job start Mon Mar 30 2020 03:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47308 * 2 1 4 4 H 1.08997 * 109.46815 * 175.55814 * 3 2 1 5 5 C 1.50700 * 109.47204 * 55.55736 * 3 2 1 6 6 H 1.08000 * 119.99904 * 245.86093 * 5 3 2 7 7 C 1.37880 * 119.99747 * 65.86998 * 5 3 2 8 8 N 1.31505 * 120.00397 * 5.31960 * 7 5 3 9 9 Si 1.86804 * 119.99744 * 185.60039 * 7 5 3 10 10 H 1.48500 * 109.46946 * 269.72457 * 9 7 5 11 11 H 1.48497 * 109.47083 * 29.71990 * 9 7 5 12 12 H 1.48491 * 109.47157 * 149.72168 * 9 7 5 13 13 C 1.52999 * 109.47005 * 295.55820 * 3 2 1 14 14 C 1.52590 * 109.24222 * 305.04931 * 13 3 2 15 15 C 1.53055 * 109.97856 * 169.67552 * 14 13 3 16 16 S 1.81667 * 108.96556 * 63.70565 * 15 14 13 17 17 O 1.42103 * 108.66351 * 191.35569 * 16 15 14 18 18 O 1.42099 * 108.66494 * 60.01415 * 16 15 14 19 19 C 1.81672 * 101.30895 * 305.68211 * 16 15 14 20 20 C 1.52586 * 109.24253 * 183.93682 * 13 3 2 21 21 H 1.09008 * 109.46841 * 304.98762 * 1 2 3 22 22 H 1.08996 * 109.46908 * 64.98346 * 1 2 3 23 23 H 1.08996 * 109.47498 * 184.98770 * 1 2 3 24 24 H 1.08999 * 109.46722 * 239.99408 * 2 1 3 25 25 H 1.09004 * 109.46750 * 120.00058 * 2 1 3 26 26 H 0.97007 * 119.99930 * 355.45764 * 8 7 5 27 27 H 1.08995 * 109.24151 * 64.49089 * 13 3 2 28 28 H 1.09001 * 109.38409 * 289.87237 * 14 13 3 29 29 H 1.09004 * 109.38482 * 49.55918 * 14 13 3 30 30 H 1.09001 * 109.57619 * 303.85557 * 15 14 13 31 31 H 1.08996 * 109.63077 * 183.59438 * 15 14 13 32 32 H 1.08996 * 109.55281 * 294.44238 * 19 16 15 33 33 H 1.09005 * 109.62666 * 174.19616 * 19 16 15 34 34 H 1.09003 * 109.38382 * 310.43965 * 20 13 3 35 35 H 1.08995 * 109.38727 * 70.12594 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1271 1.4434 0.0796 5 6 1.4499 2.1840 1.1717 6 1 0.7630 3.0003 1.0037 7 6 1.7871 1.8203 2.4583 8 7 2.7016 0.8977 2.6626 9 14 0.9390 2.6326 3.9110 10 1 1.7055 3.8363 4.3219 11 1 -0.4372 3.0315 3.5211 12 1 0.8747 1.6759 5.0449 13 6 1.6233 2.1307 -1.3013 14 6 2.1173 1.3065 -2.4867 15 6 1.4975 1.8322 -3.7837 16 16 2.0717 3.5325 -4.0656 17 8 1.2995 4.1056 -5.1119 18 8 3.4888 3.5225 -4.1703 19 6 1.6101 4.3287 -2.4993 20 6 2.2171 3.5358 -1.3396 21 1 -0.3633 0.5893 0.8420 22 1 -0.3633 0.4346 -0.9312 23 1 -0.3634 -1.0237 0.0893 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5139 0.8900 26 1 3.0917 0.4263 1.9098 27 1 0.5362 2.1989 -1.3394 28 1 3.2032 1.3773 -2.5491 29 1 1.8317 0.2639 -2.3465 30 1 0.4109 1.8235 -3.6989 31 1 1.8034 1.2008 -4.6178 32 1 0.5245 4.3425 -2.4031 33 1 1.9908 5.3500 -2.4816 34 1 2.0009 4.0455 -0.4006 35 1 3.2967 3.4689 -1.4729 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261096263.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:57:38 Heat of formation + Delta-G solvation = -119.263509 kcal Electronic energy + Delta-G solvation = -17136.590015 eV Core-core repulsion = 14453.056598 eV Total energy + Delta-G solvation = -2683.533417 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.66457 -37.99417 -37.05993 -35.76058 -33.28753 -32.51355 -29.67793 -26.83879 -25.40639 -24.25029 -22.38054 -20.53135 -19.76959 -18.55377 -17.88542 -17.23659 -16.71280 -15.85788 -15.63236 -15.41205 -15.33049 -14.82207 -14.30640 -13.83691 -13.67009 -13.64558 -13.19864 -13.14749 -13.06311 -12.67710 -12.61067 -12.52336 -12.20448 -11.98181 -11.91663 -11.85467 -11.50776 -11.18611 -10.95803 -10.82069 -10.31432 -10.17566 -8.40450 -6.12017 -0.85823 1.56493 1.62859 1.77964 1.78365 2.63637 2.72833 3.02817 3.35636 3.71746 3.78193 3.86772 3.91323 4.16922 4.36377 4.47254 4.52375 4.58056 4.69027 4.81018 4.86217 4.96442 5.03135 5.14343 5.22313 5.33894 5.42712 5.48730 5.67196 5.77404 5.84852 6.26996 6.44028 6.83631 7.64540 8.96796 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.035033 B = 0.007075 C = 0.006534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.044528 B = 3956.796795 C = 4283.955176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.122 4.122 3 C 0.035 3.965 4 H -0.011 1.011 5 C -0.576 4.576 6 H 0.052 0.948 7 C -0.031 4.031 8 N -0.949 5.949 9 Si 1.099 2.901 10 H -0.283 1.283 11 H -0.269 1.269 12 H -0.294 1.294 13 C -0.088 4.088 14 C -0.117 4.117 15 C -0.581 4.581 16 S 2.421 3.579 17 O -0.982 6.982 18 O -0.982 6.982 19 C -0.586 4.586 20 C -0.102 4.102 21 H 0.042 0.958 22 H 0.063 0.937 23 H 0.040 0.960 24 H 0.056 0.944 25 H 0.025 0.975 26 H 0.262 0.738 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.098 0.902 30 H 0.158 0.842 31 H 0.152 0.848 32 H 0.154 0.846 33 H 0.143 0.857 34 H 0.081 0.919 35 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.322 2.336 -10.810 12.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.160 4.160 3 C 0.017 3.983 4 H 0.007 0.993 5 C -0.615 4.615 6 H 0.070 0.930 7 C -0.229 4.229 8 N -0.588 5.588 9 Si 0.924 3.076 10 H -0.209 1.209 11 H -0.194 1.194 12 H -0.220 1.220 13 C -0.107 4.107 14 C -0.155 4.155 15 C -0.712 4.712 16 S 2.608 3.392 17 O -0.979 6.979 18 O -0.980 6.980 19 C -0.717 4.717 20 C -0.141 4.141 21 H 0.061 0.939 22 H 0.082 0.918 23 H 0.059 0.941 24 H 0.075 0.925 25 H 0.043 0.957 26 H 0.074 0.926 27 H 0.104 0.896 28 H 0.088 0.912 29 H 0.117 0.883 30 H 0.176 0.824 31 H 0.170 0.830 32 H 0.172 0.828 33 H 0.161 0.839 34 H 0.100 0.900 35 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.923 2.807 -9.949 11.450 hybrid contribution 0.068 -0.488 -0.590 0.769 sum -4.855 2.318 -10.539 11.833 Atomic orbital electron populations 1.21577 0.95538 0.99686 1.01716 1.21670 0.96962 0.98531 0.98819 1.18804 0.94066 0.92594 0.92868 0.99263 1.22196 1.28914 1.17786 0.92560 0.92991 1.26747 0.95811 0.97144 1.03176 1.70852 1.26486 1.26039 1.35429 0.83147 0.75892 0.75136 0.73424 1.20943 1.19375 1.22046 1.21219 1.01193 0.93598 0.94674 1.21553 1.00634 1.02758 0.90521 1.30042 1.13438 1.20887 1.06877 1.07658 0.74656 0.79680 0.77182 1.93522 1.72847 1.77380 1.54159 1.93514 1.30594 1.87039 1.86824 1.30109 1.12909 1.12084 1.16611 1.21257 0.99608 0.95340 0.97872 0.93852 0.91823 0.94108 0.92548 0.95667 0.92645 0.89609 0.91154 0.88343 0.82353 0.82967 0.82778 0.83880 0.90000 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.59 9.32 71.98 0.67 -3.92 16 2 C -0.12 -4.93 5.05 30.59 0.15 -4.78 16 3 C 0.04 1.51 1.30 -11.54 -0.01 1.50 16 4 H -0.01 -0.53 7.65 -2.39 -0.02 -0.55 16 5 C -0.58 -28.22 5.92 25.60 0.15 -28.07 16 6 H 0.05 2.48 7.28 -2.91 -0.02 2.46 16 7 C -0.03 -1.63 5.29 84.66 0.45 -1.18 16 8 N -0.95 -55.11 13.19 21.45 0.28 -54.82 16 9 Si 1.10 48.07 29.91 68.60 2.05 50.12 16 10 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.27 -10.74 7.11 99.48 0.71 -10.04 16 12 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 13 C -0.09 -2.86 1.13 -11.07 -0.01 -2.87 16 14 C -0.12 -3.08 4.83 30.48 0.15 -2.93 16 15 C -0.58 -11.32 6.35 72.00 0.46 -10.86 16 16 S 2.42 58.84 5.31 -56.49 -0.30 58.54 16 17 O -0.98 -28.57 18.10 -127.40 -2.31 -30.88 16 18 O -0.98 -31.69 17.94 -127.40 -2.29 -33.97 16 19 C -0.59 -13.34 6.35 72.00 0.46 -12.89 16 20 C -0.10 -3.19 4.95 30.47 0.15 -3.04 16 21 H 0.04 1.77 6.90 -2.38 -0.02 1.75 16 22 H 0.06 1.90 6.90 -2.39 -0.02 1.88 16 23 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 24 H 0.06 1.95 5.86 -2.39 -0.01 1.94 16 25 H 0.02 1.19 6.18 -2.38 -0.01 1.17 16 26 H 0.26 15.27 5.63 -92.70 -0.52 14.74 16 27 H 0.09 2.54 6.83 -2.39 -0.02 2.52 16 28 H 0.07 1.97 8.01 -2.39 -0.02 1.95 16 29 H 0.10 2.50 5.65 -2.39 -0.01 2.48 16 30 H 0.16 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.15 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.15 2.75 8.14 -2.39 -0.02 2.73 16 33 H 0.14 2.81 8.14 -2.39 -0.02 2.80 16 34 H 0.08 2.88 6.72 -2.39 -0.02 2.87 16 35 H 0.06 2.07 8.01 -2.39 -0.02 2.05 16 Total: -1.00 -68.62 278.58 1.37 -67.25 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 1.32 Total: 12.80 kcal Atomic # 6 Polarization: -71.65 SS G_CDS: 2.61 Total: -69.04 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: 0.28 Total: -54.82 kcal Atomic # 8 Polarization: -60.26 SS G_CDS: -4.59 Total: -64.85 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 2.05 Total: 50.12 kcal Atomic # 16 Polarization: 58.84 SS G_CDS: -0.30 Total: 58.54 kcal Total: -68.62 1.37 -67.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261096263.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.009 kcal (2) G-P(sol) polarization free energy of solvation -68.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds