Wall clock time and date at job start Mon Mar 30 2020 03:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47249 * 2 1 4 4 C 1.53004 * 109.47144 * 119.99563 * 2 1 3 5 5 C 1.50700 * 109.29696 * 65.78988 * 4 2 1 6 6 H 1.07997 * 120.00331 * 241.98167 * 5 4 2 7 7 C 1.37883 * 120.00053 * 61.98037 * 5 4 2 8 8 N 1.31505 * 120.00248 * 192.84805 * 7 5 4 9 9 Si 1.86802 * 119.99531 * 12.84683 * 7 5 4 10 10 H 1.48501 * 109.47418 * 84.53698 * 9 7 5 11 11 H 1.48507 * 109.46804 * 204.53759 * 9 7 5 12 12 H 1.48504 * 109.47097 * 324.53237 * 9 7 5 13 13 C 1.52587 * 109.38581 * 306.05947 * 4 2 1 14 14 C 1.52593 * 110.64672 * 169.85487 * 13 4 2 15 15 C 1.53037 * 109.98667 * 69.98062 * 14 13 4 16 16 S 1.81672 * 108.99869 * 296.35808 * 15 14 13 17 17 O 1.42099 * 108.66087 * 299.96739 * 16 15 14 18 18 O 1.42098 * 108.66513 * 168.62814 * 16 15 14 19 19 C 1.53029 * 109.38793 * 185.53028 * 4 2 1 20 20 H 1.09001 * 109.47018 * 300.00571 * 1 2 3 21 21 H 1.08999 * 109.47169 * 60.00034 * 1 2 3 22 22 H 1.08999 * 109.47308 * 180.02562 * 1 2 3 23 23 H 1.09002 * 109.47536 * 239.99371 * 2 1 3 24 24 H 1.09001 * 109.47151 * 179.97438 * 3 2 1 25 25 H 1.08994 * 109.46865 * 299.99350 * 3 2 1 26 26 H 1.08992 * 109.47309 * 59.99823 * 3 2 1 27 27 H 0.97001 * 119.99881 * 180.02562 * 8 7 5 28 28 H 1.09008 * 109.24026 * 290.15097 * 13 4 2 29 29 H 1.08996 * 109.24635 * 49.54789 * 13 4 2 30 30 H 1.08993 * 109.38581 * 190.13828 * 14 13 4 31 31 H 1.09006 * 109.38098 * 309.82555 * 14 13 4 32 32 H 1.09000 * 109.54798 * 56.20685 * 15 14 13 33 33 H 1.08991 * 109.55031 * 176.40603 * 15 14 13 34 34 H 1.09009 * 109.55228 * 303.66188 * 19 4 2 35 35 H 1.08998 * 109.55078 * 63.95274 * 19 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6561 -2.1766 1.1758 6 1 1.0029 -2.6013 1.9237 7 6 2.1387 -2.9661 0.1536 8 7 1.6167 -4.1536 -0.0626 9 14 3.5342 -2.3489 -0.9240 10 1 4.8334 -2.6380 -0.2653 11 1 3.4832 -3.0342 -2.2405 12 1 3.3951 -0.8838 -1.1229 13 6 1.4100 -0.0933 2.4892 14 6 1.6971 -0.9399 3.7259 15 6 3.1801 -0.8456 4.0916 16 16 4.1683 -1.5545 2.7420 17 8 3.7938 -2.9144 2.5701 18 8 5.5345 -1.2300 2.9598 19 6 3.5639 -0.6007 1.3189 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 1.8934 -0.5139 -0.8899 24 1 3.1300 1.4425 0.0005 25 1 1.6768 1.9562 -0.8900 26 1 1.6767 1.9563 0.8899 27 1 1.9565 -4.7092 -0.7815 28 1 1.8213 0.9057 2.6344 29 1 0.3319 -0.0199 2.3464 30 1 1.0952 -0.5783 4.5595 31 1 1.4405 -1.9792 3.5203 32 1 3.4547 0.1995 4.2346 33 1 3.3649 -1.4005 5.0113 34 1 4.0033 -0.9950 0.4025 35 1 3.8420 0.4466 1.4371 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261126273.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:47:33 Heat of formation + Delta-G solvation = -78.588207 kcal Electronic energy + Delta-G solvation = -18190.832282 eV Core-core repulsion = 15509.062679 eV Total energy + Delta-G solvation = -2681.769603 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.13556 -37.70896 -36.73003 -34.97566 -34.17441 -31.60866 -28.99904 -27.69642 -26.59044 -24.08719 -22.46827 -20.39863 -19.64149 -17.83823 -17.54844 -17.12629 -17.06106 -16.25538 -15.91986 -15.16895 -14.76036 -14.66340 -14.41344 -13.95208 -13.92769 -13.58527 -13.16287 -12.84790 -12.78589 -12.72603 -12.42724 -12.21170 -12.11021 -11.88111 -11.73347 -11.62370 -11.46884 -11.21931 -10.90814 -10.57480 -10.40958 -10.04714 -8.20215 -6.12295 -0.61882 1.16334 1.20172 1.32548 2.02588 2.34221 2.93746 3.20870 3.33482 3.86916 3.97772 3.99786 4.23009 4.32214 4.40191 4.57551 4.65855 4.69431 4.76801 4.90874 5.00820 5.06529 5.13692 5.24859 5.31457 5.39487 5.46158 5.54187 5.63516 5.74921 5.87049 5.97116 6.44304 6.96202 7.52942 8.98701 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.020483 B = 0.016314 C = 0.012831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1366.649850 B = 1715.866774 C = 2181.662523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.096 4.096 3 C -0.151 4.151 4 C 0.063 3.937 5 C -0.491 4.491 6 H 0.063 0.937 7 C 0.056 3.944 8 N -0.934 5.934 9 Si 0.844 3.156 10 H -0.297 1.297 11 H -0.307 1.307 12 H -0.180 1.180 13 C -0.119 4.119 14 C -0.110 4.110 15 C -0.566 4.566 16 S 2.380 3.620 17 O -0.958 6.958 18 O -1.008 7.008 19 C -0.607 4.607 20 H 0.074 0.926 21 H 0.048 0.952 22 H 0.035 0.965 23 H 0.042 0.958 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.080 0.920 27 H 0.255 0.745 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.105 0.895 31 H 0.066 0.934 32 H 0.164 0.836 33 H 0.142 0.858 34 H 0.090 0.910 35 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.573 14.516 5.627 15.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.116 4.116 3 C -0.208 4.208 4 C 0.061 3.939 5 C -0.529 4.529 6 H 0.081 0.919 7 C -0.143 4.143 8 N -0.574 5.574 9 Si 0.675 3.325 10 H -0.226 1.226 11 H -0.236 1.236 12 H -0.104 1.104 13 C -0.156 4.156 14 C -0.148 4.148 15 C -0.700 4.700 16 S 2.570 3.430 17 O -0.955 6.955 18 O -1.005 7.005 19 C -0.738 4.738 20 H 0.092 0.908 21 H 0.067 0.933 22 H 0.054 0.946 23 H 0.060 0.940 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.098 0.902 27 H 0.065 0.935 28 H 0.112 0.888 29 H 0.107 0.893 30 H 0.124 0.876 31 H 0.085 0.915 32 H 0.182 0.818 33 H 0.160 0.840 34 H 0.108 0.892 35 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 0.122 13.668 5.555 14.754 hybrid contribution 0.611 -0.528 -1.126 1.386 sum 0.733 13.140 4.429 13.886 Atomic orbital electron populations 1.21734 0.94793 1.00991 1.01305 1.21501 0.96601 0.95821 0.97649 1.22007 1.00805 0.95285 1.02662 1.18249 0.85461 0.94606 0.95560 1.21170 1.29137 0.92735 1.09887 0.91912 1.25320 0.96897 0.94615 0.97450 1.69985 1.42691 1.12485 1.32275 0.87959 0.82112 0.83104 0.79326 1.22569 1.23566 1.10362 1.21749 1.03110 0.98868 0.91844 1.21362 0.91185 1.02800 0.99474 1.29874 1.09691 1.14701 1.15689 1.08490 0.75462 0.77779 0.81236 1.93631 1.83877 1.32740 1.85220 1.93446 1.34241 1.86541 1.86280 1.30737 1.10743 1.15262 1.17032 0.90766 0.93292 0.94586 0.93999 0.92917 0.92751 0.90157 0.93541 0.88777 0.89279 0.87633 0.91505 0.81806 0.84028 0.89184 0.82126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.21 8.51 71.98 0.61 -3.60 16 2 C -0.10 -3.31 1.71 -10.79 -0.02 -3.33 16 3 C -0.15 -3.81 8.47 71.98 0.61 -3.20 16 4 C 0.06 2.33 0.06 -53.05 0.00 2.32 16 5 C -0.49 -24.52 4.60 25.60 0.12 -24.40 16 6 H 0.06 3.45 6.40 -2.91 -0.02 3.43 16 7 C 0.06 3.17 4.67 84.66 0.40 3.56 16 8 N -0.93 -58.83 13.96 21.45 0.30 -58.53 16 9 Si 0.84 42.34 22.44 68.60 1.54 43.88 16 10 H -0.30 -15.52 7.11 99.48 0.71 -14.82 16 11 H -0.31 -15.97 7.11 99.48 0.71 -15.27 16 12 H -0.18 -7.45 4.53 99.48 0.45 -7.00 16 13 C -0.12 -3.25 3.87 30.32 0.12 -3.13 16 14 C -0.11 -3.02 5.56 30.47 0.17 -2.86 16 15 C -0.57 -14.53 6.35 71.99 0.46 -14.08 16 16 S 2.38 93.21 5.16 -56.49 -0.29 92.92 16 17 O -0.96 -48.80 15.01 -127.39 -1.91 -50.71 16 18 O -1.01 -43.04 18.10 -127.39 -2.31 -45.35 16 19 C -0.61 -22.07 3.73 71.99 0.27 -21.80 16 20 H 0.07 1.95 6.10 -2.39 -0.01 1.93 16 21 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.03 1.40 7.40 -2.39 -0.02 1.39 16 23 H 0.04 1.68 4.14 -2.39 -0.01 1.67 16 24 H 0.05 1.29 6.42 -2.39 -0.02 1.28 16 25 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.08 1.59 6.82 -2.39 -0.02 1.57 16 27 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 28 H 0.09 1.81 7.02 -2.38 -0.02 1.79 16 29 H 0.09 2.34 5.72 -2.39 -0.01 2.33 16 30 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.07 2.40 5.77 -2.38 -0.01 2.39 16 32 H 0.16 2.78 8.14 -2.39 -0.02 2.76 16 33 H 0.14 3.14 8.14 -2.39 -0.02 3.12 16 34 H 0.09 3.74 2.31 -2.38 -0.01 3.73 16 35 H 0.16 4.16 6.58 -2.39 -0.02 4.15 16 Total: -1.00 -75.14 254.64 0.89 -74.25 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: 0.84 Total: 14.04 kcal Atomic # 6 Polarization: -73.23 SS G_CDS: 2.73 Total: -70.50 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: 0.30 Total: -58.53 kcal Atomic # 8 Polarization: -91.84 SS G_CDS: -4.22 Total: -96.06 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 1.54 Total: 43.88 kcal Atomic # 16 Polarization: 93.21 SS G_CDS: -0.29 Total: 92.92 kcal Total: -75.14 0.89 -74.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261126273.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.341 kcal (2) G-P(sol) polarization free energy of solvation -75.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds