Wall clock time and date at job start Mon Mar 30 2020 04:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99656 * 2 1 4 4 H 1.48500 * 109.47160 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47409 * 300.00097 * 3 2 1 6 6 H 1.48500 * 109.47035 * 60.00078 * 3 2 1 7 7 C 1.37878 * 120.00443 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00045 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99602 * 359.97438 * 7 2 1 10 10 C 1.50702 * 109.46972 * 180.02562 * 9 7 2 11 11 C 1.38136 * 120.03451 * 265.01883 * 10 9 7 12 12 C 1.38256 * 120.07164 * 179.97438 * 11 10 9 13 13 C 1.38309 * 120.14045 * 0.02562 * 12 11 10 14 14 C 1.38095 * 120.06565 * 359.97438 * 13 12 11 15 15 C 1.38851 * 120.03700 * 84.99784 * 10 9 7 16 16 N 1.39950 * 120.06936 * 0.04786 * 15 10 9 17 17 C 1.47055 * 125.40663 * 269.97665 * 16 15 10 18 18 C 1.54105 * 103.86217 * 179.97438 * 17 16 15 19 19 N 1.47058 * 103.86165 * 0.02562 * 18 17 16 20 20 C 1.33943 * 125.41310 * 89.66804 * 16 15 10 21 21 O 1.21590 * 123.04218 * 0.02562 * 20 16 15 22 22 H 0.96993 * 120.00274 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47753 * 60.00338 * 9 7 2 24 24 H 1.09002 * 109.47256 * 299.99945 * 9 7 2 25 25 H 1.08000 * 119.96196 * 0.02562 * 11 10 9 26 26 H 1.07995 * 119.93156 * 180.02562 * 12 11 10 27 27 H 1.07997 * 119.96239 * 180.27529 * 13 12 11 28 28 H 1.07996 * 120.03079 * 180.02562 * 14 13 12 29 29 H 1.09002 * 110.54711 * 298.59745 * 17 16 15 30 30 H 1.09003 * 110.55131 * 61.40437 * 17 16 15 31 31 H 1.08998 * 110.54158 * 118.59390 * 18 17 16 32 32 H 1.08997 * 110.55098 * 241.40661 * 18 17 16 33 33 H 0.96996 * 125.41177 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8902 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2305 -3.6445 -0.0005 11 6 2.6009 -4.2375 -1.1919 12 6 3.4997 -5.2880 -1.1928 13 6 4.0304 -5.7490 -0.0017 14 6 3.6641 -5.1604 1.1926 15 6 2.7618 -4.1047 1.1969 16 7 2.3882 -3.5064 2.4057 17 6 3.0680 -2.3659 3.0378 18 6 2.2566 -2.1193 4.3245 19 7 1.2061 -3.1475 4.2810 20 6 1.3512 -3.8780 3.1677 21 8 0.6109 -4.7978 2.8771 22 1 -0.4850 0.8400 -0.0004 23 1 0.6242 -2.5568 -0.8903 24 1 0.6248 -2.5571 0.8897 25 1 2.1885 -3.8795 -2.1237 26 1 3.7880 -5.7497 -2.1256 27 1 4.7357 -6.5669 -0.0062 28 1 4.0792 -5.5205 2.1223 29 1 4.0999 -2.6213 3.2788 30 1 3.0310 -1.4908 2.3889 31 1 2.8855 -2.2524 5.2047 32 1 1.8169 -1.1220 4.3144 33 1 0.5154 -3.2740 4.9502 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261174510.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:34 Heat of formation + Delta-G solvation = 11.360029 kcal Electronic energy + Delta-G solvation = -18011.004385 eV Core-core repulsion = 15229.984030 eV Total energy + Delta-G solvation = -2781.020355 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.72409 -38.38051 -35.76881 -33.78482 -33.28396 -31.19770 -29.48128 -28.20472 -26.93338 -23.45355 -22.84489 -22.32211 -20.74324 -19.52168 -17.37770 -16.38113 -16.24289 -16.14215 -15.25036 -14.57954 -14.46819 -14.27140 -13.66587 -13.29050 -13.18290 -12.59369 -12.44189 -12.00726 -11.87114 -11.78864 -11.43973 -11.13043 -10.94999 -10.59204 -10.43130 -9.74215 -9.63423 -9.47500 -8.87210 -8.47941 -8.24042 -8.11356 -7.82738 -6.08152 -4.12531 1.85480 2.08091 3.07865 3.21652 3.31058 3.33736 3.69773 4.26463 4.36306 4.46088 4.83563 5.23261 5.26028 5.45491 5.52253 5.59021 5.68367 5.84093 6.04488 6.15209 6.19766 6.27644 6.43023 6.68469 6.88751 7.07728 7.15155 7.31843 7.46924 7.55352 7.79190 7.84569 7.87878 7.99463 8.26987 8.92260 9.14679 9.49673 11.01452 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.017288 B = 0.010658 C = 0.007874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.271797 B = 2626.566576 C = 3555.246119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.060 3.940 3 Si 0.889 3.111 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.506 4.506 8 H 0.057 0.943 9 C 0.052 3.948 10 C -0.026 4.026 11 C -0.122 4.122 12 C -0.116 4.116 13 C -0.144 4.144 14 C -0.112 4.112 15 C 0.156 3.844 16 N -0.570 5.570 17 C 0.091 3.909 18 C 0.097 3.903 19 N -0.743 5.743 20 C 0.707 3.293 21 O -0.589 6.589 22 H 0.261 0.739 23 H 0.027 0.973 24 H 0.031 0.969 25 H 0.122 0.878 26 H 0.115 0.885 27 H 0.116 0.884 28 H 0.113 0.887 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.012 -4.506 6.021 10.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.142 4.142 3 Si 0.717 3.283 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.544 4.544 8 H 0.075 0.925 9 C 0.015 3.985 10 C -0.027 4.027 11 C -0.140 4.140 12 C -0.134 4.134 13 C -0.163 4.163 14 C -0.131 4.131 15 C 0.066 3.934 16 N -0.303 5.303 17 C -0.031 4.031 18 C -0.029 4.029 19 N -0.405 5.405 20 C 0.409 3.591 21 O -0.467 6.467 22 H 0.071 0.929 23 H 0.045 0.955 24 H 0.049 0.951 25 H 0.140 0.860 26 H 0.133 0.867 27 H 0.134 0.866 28 H 0.131 0.869 29 H 0.090 0.910 30 H 0.123 0.877 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 7.543 -4.899 5.751 10.676 hybrid contribution 0.172 1.130 0.312 1.185 sum 7.716 -3.769 6.063 10.512 Atomic orbital electron populations 1.69982 1.06015 1.26612 1.50079 1.25004 0.94797 0.99032 0.95361 0.86578 0.80145 0.83813 0.77780 1.19579 1.20924 1.20959 1.20976 0.92737 0.89614 1.51109 0.92521 1.18281 0.92459 0.89304 0.98479 1.20980 0.95255 0.95284 0.91181 1.21015 0.98687 0.96443 0.97883 1.21102 0.97580 0.97168 0.97551 1.20735 1.02143 1.01167 0.92216 1.21148 0.98007 0.95955 0.98015 1.16849 0.98350 0.94943 0.83232 1.43841 1.30972 1.34244 1.21273 1.22562 0.95799 0.91468 0.93279 1.22315 0.89596 0.93212 0.97729 1.44946 1.34503 1.36046 1.25001 1.15775 0.81080 0.81949 0.80346 1.90918 1.48149 1.32499 1.75120 0.92899 0.95489 0.95087 0.85967 0.86674 0.86635 0.86882 0.90956 0.87669 0.90721 0.89956 0.73418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.76 13.29 55.43 0.74 -25.02 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 20.42 29.54 -169.99 -5.02 15.40 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.51 -13.49 7.87 -34.44 -0.27 -13.76 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.05 1.36 4.80 -29.04 -0.14 1.22 16 10 C -0.03 -0.58 5.09 -104.43 -0.53 -1.11 16 11 C -0.12 -2.41 9.68 -39.61 -0.38 -2.79 16 12 C -0.12 -1.92 10.04 -39.55 -0.40 -2.32 16 13 C -0.14 -2.31 10.04 -39.61 -0.40 -2.70 16 14 C -0.11 -2.00 9.97 -39.40 -0.39 -2.40 16 15 C 0.16 3.28 5.42 -83.69 -0.45 2.82 16 16 N -0.57 -11.46 2.13 -118.24 -0.25 -11.71 16 17 C 0.09 1.48 7.62 -3.16 -0.02 1.46 16 18 C 0.10 1.29 8.06 -3.16 -0.03 1.26 16 19 N -0.74 -11.96 6.37 -64.70 -0.41 -12.37 16 20 C 0.71 14.91 8.02 -88.40 -0.71 14.20 16 21 O -0.59 -14.75 17.65 5.29 0.09 -14.66 16 22 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 23 H 0.03 0.75 8.05 -51.93 -0.42 0.34 16 24 H 0.03 0.90 7.15 -51.93 -0.37 0.53 16 25 H 0.12 2.30 8.06 -52.49 -0.42 1.88 16 26 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 27 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 28 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.11 1.95 6.87 -51.93 -0.36 1.59 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.43 5.73 8.96 -40.82 -0.37 5.37 16 LS Contribution 286.11 15.07 4.31 4.31 Total: -1.00 -33.47 286.11 -8.38 -41.85 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -4.01 Total: 4.80 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -3.82 Total: -2.59 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: 0.07 Total: -49.11 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: 0.09 Total: -14.66 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -33.47 -8.38 -41.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261174510.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.209 kcal (2) G-P(sol) polarization free energy of solvation -33.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds