Wall clock time and date at job start Mon Mar 30 2020 04:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99656 * 2 1 4 4 H 1.48500 * 109.47160 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47409 * 300.00097 * 3 2 1 6 6 H 1.48500 * 109.47035 * 60.00078 * 3 2 1 7 7 C 1.37878 * 120.00443 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00045 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99602 * 359.97438 * 7 2 1 10 10 C 1.50702 * 109.46972 * 180.02562 * 9 7 2 11 11 C 1.38136 * 120.03451 * 265.01883 * 10 9 7 12 12 C 1.38256 * 120.07164 * 179.97438 * 11 10 9 13 13 C 1.38309 * 120.14045 * 0.02562 * 12 11 10 14 14 C 1.38095 * 120.06565 * 359.97438 * 13 12 11 15 15 C 1.38851 * 120.03700 * 84.99784 * 10 9 7 16 16 N 1.39950 * 120.06936 * 0.04786 * 15 10 9 17 17 C 1.47055 * 125.40663 * 269.97665 * 16 15 10 18 18 C 1.54105 * 103.86217 * 179.97438 * 17 16 15 19 19 N 1.47058 * 103.86165 * 0.02562 * 18 17 16 20 20 C 1.33943 * 125.41310 * 89.66804 * 16 15 10 21 21 O 1.21590 * 123.04218 * 0.02562 * 20 16 15 22 22 H 0.96993 * 120.00274 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47753 * 60.00338 * 9 7 2 24 24 H 1.09002 * 109.47256 * 299.99945 * 9 7 2 25 25 H 1.08000 * 119.96196 * 0.02562 * 11 10 9 26 26 H 1.07995 * 119.93156 * 180.02562 * 12 11 10 27 27 H 1.07997 * 119.96239 * 180.27529 * 13 12 11 28 28 H 1.07996 * 120.03079 * 180.02562 * 14 13 12 29 29 H 1.09002 * 110.54711 * 298.59745 * 17 16 15 30 30 H 1.09003 * 110.55131 * 61.40437 * 17 16 15 31 31 H 1.08998 * 110.54158 * 118.59390 * 18 17 16 32 32 H 1.08997 * 110.55098 * 241.40661 * 18 17 16 33 33 H 0.96996 * 125.41177 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8902 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2305 -3.6445 -0.0005 11 6 2.6009 -4.2375 -1.1919 12 6 3.4997 -5.2880 -1.1928 13 6 4.0304 -5.7490 -0.0017 14 6 3.6641 -5.1604 1.1926 15 6 2.7618 -4.1047 1.1969 16 7 2.3882 -3.5064 2.4057 17 6 3.0680 -2.3659 3.0378 18 6 2.2566 -2.1193 4.3245 19 7 1.2061 -3.1475 4.2810 20 6 1.3512 -3.8780 3.1677 21 8 0.6109 -4.7978 2.8771 22 1 -0.4850 0.8400 -0.0004 23 1 0.6242 -2.5568 -0.8903 24 1 0.6248 -2.5571 0.8897 25 1 2.1885 -3.8795 -2.1237 26 1 3.7880 -5.7497 -2.1256 27 1 4.7357 -6.5669 -0.0062 28 1 4.0792 -5.5205 2.1223 29 1 4.0999 -2.6213 3.2788 30 1 3.0310 -1.4908 2.3889 31 1 2.8855 -2.2524 5.2047 32 1 1.8169 -1.1220 4.3144 33 1 0.5154 -3.2740 4.9502 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261174510.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:22:34 Heat of formation + Delta-G solvation = -11.249412 kcal Electronic energy + Delta-G solvation = -18011.984804 eV Core-core repulsion = 15229.984030 eV Total energy + Delta-G solvation = -2782.000774 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.19107 -39.85352 -37.37369 -35.52355 -34.94186 -32.97808 -30.88466 -29.64629 -28.71446 -25.35389 -24.23404 -23.67256 -22.36768 -21.00651 -18.85528 -18.48513 -17.69090 -17.55903 -16.84089 -16.24973 -15.89654 -15.75879 -15.15414 -14.73098 -14.67826 -14.47279 -14.11040 -13.44475 -13.35545 -13.16616 -13.11657 -12.80255 -12.67577 -12.35030 -12.08731 -11.52509 -11.48134 -11.39392 -10.61606 -10.36007 -9.68352 -9.49795 -9.40119 -8.17900 -6.31684 0.41471 0.60326 1.39452 1.41952 1.54556 1.68003 2.13064 2.39715 2.90093 3.11156 3.12673 3.63669 4.08543 4.15939 4.23703 4.30957 4.46780 4.58398 4.63567 4.75424 4.80442 4.98453 5.10218 5.12999 5.25659 5.37374 5.55541 5.64735 5.74942 5.84160 5.98893 6.11359 6.16837 6.41064 6.54846 6.79527 7.35923 7.61716 8.92353 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.017288 B = 0.010658 C = 0.007874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1619.271797 B = 2626.566576 C = 3555.246119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.965 3.035 4 H -0.256 1.256 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.506 4.506 8 H 0.060 0.940 9 C 0.070 3.930 10 C -0.070 4.070 11 C -0.137 4.137 12 C -0.106 4.106 13 C -0.126 4.126 14 C -0.114 4.114 15 C 0.134 3.866 16 N -0.576 5.576 17 C 0.083 3.917 18 C 0.101 3.899 19 N -0.732 5.732 20 C 0.692 3.308 21 O -0.643 6.643 22 H 0.263 0.737 23 H -0.011 1.011 24 H -0.013 1.013 25 H 0.118 0.882 26 H 0.157 0.843 27 H 0.163 0.837 28 H 0.137 0.863 29 H 0.109 0.891 30 H 0.075 0.925 31 H 0.127 0.873 32 H 0.086 0.914 33 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.250 -4.816 6.854 14.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.192 4.192 3 Si 0.789 3.211 4 H -0.180 1.180 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.544 4.544 8 H 0.078 0.922 9 C 0.033 3.967 10 C -0.071 4.071 11 C -0.156 4.156 12 C -0.123 4.123 13 C -0.144 4.144 14 C -0.133 4.133 15 C 0.044 3.956 16 N -0.309 5.309 17 C -0.038 4.038 18 C -0.022 4.022 19 N -0.393 5.393 20 C 0.393 3.607 21 O -0.525 6.525 22 H 0.072 0.928 23 H 0.007 0.993 24 H 0.006 0.994 25 H 0.136 0.864 26 H 0.174 0.826 27 H 0.181 0.819 28 H 0.154 0.846 29 H 0.127 0.873 30 H 0.094 0.906 31 H 0.145 0.855 32 H 0.104 0.896 33 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges 10.816 -5.178 6.615 13.695 hybrid contribution -0.818 1.153 0.021 1.414 sum 9.998 -4.025 6.636 12.657 Atomic orbital electron populations 1.70145 1.08062 1.27689 1.51404 1.25943 0.95538 1.03088 0.94658 0.85404 0.79315 0.78592 0.77822 1.17975 1.21057 1.19894 1.21149 0.92744 0.90056 1.50438 0.92187 1.17893 0.92534 0.91843 0.94461 1.20797 0.96757 0.95929 0.93623 1.21131 0.99961 0.97798 0.96709 1.21499 0.95622 0.95395 0.99821 1.21304 1.01197 1.00960 0.90910 1.21459 0.97097 0.94741 1.00051 1.17175 0.99266 0.96262 0.82900 1.44026 1.30981 1.34893 1.20982 1.22792 0.98066 0.89283 0.93669 1.22578 0.89016 0.92398 0.98241 1.44934 1.35228 1.35515 1.23653 1.16180 0.80976 0.82039 0.81495 1.90851 1.49967 1.35070 1.76647 0.92825 0.99298 0.99437 0.86423 0.82578 0.81920 0.84555 0.87310 0.90634 0.85547 0.89610 0.72132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.47 13.29 21.45 0.28 -56.19 16 2 C 0.01 0.31 5.46 84.65 0.46 0.77 16 3 Si 0.96 42.34 29.54 68.60 2.03 44.37 16 4 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 7 C -0.51 -28.04 7.87 25.60 0.20 -27.84 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 9 C 0.07 3.94 4.80 29.10 0.14 4.08 16 10 C -0.07 -3.28 5.09 -19.74 -0.10 -3.39 16 11 C -0.14 -5.48 9.68 22.25 0.22 -5.27 16 12 C -0.11 -3.19 10.04 22.29 0.22 -2.97 16 13 C -0.13 -3.51 10.04 22.25 0.22 -3.29 16 14 C -0.11 -3.83 9.97 22.39 0.22 -3.60 16 15 C 0.13 5.66 5.42 38.15 0.21 5.87 16 16 N -0.58 -23.39 2.13 -646.72 -1.38 -24.77 16 17 C 0.08 2.62 7.62 86.65 0.66 3.28 16 18 C 0.10 2.49 8.06 86.65 0.70 3.19 16 19 N -0.73 -23.24 6.37 -477.33 -3.04 -26.28 16 20 C 0.69 29.88 8.02 179.57 1.44 31.32 16 21 O -0.64 -33.66 17.65 -4.00 -0.07 -33.73 16 22 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 23 H -0.01 -0.70 8.05 -2.39 -0.02 -0.72 16 24 H -0.01 -0.81 7.15 -2.39 -0.02 -0.82 16 25 H 0.12 4.61 8.06 -2.91 -0.02 4.59 16 26 H 0.16 3.43 8.06 -2.91 -0.02 3.40 16 27 H 0.16 3.08 8.06 -2.91 -0.02 3.06 16 28 H 0.14 3.88 8.06 -2.91 -0.02 3.85 16 29 H 0.11 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.08 2.81 6.87 -2.39 -0.02 2.80 16 31 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.44 11.56 8.96 -92.71 -0.83 10.73 16 Total: -1.00 -78.83 286.11 2.70 -76.13 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.29 Total: 18.31 kcal Atomic # 6 Polarization: -2.43 SS G_CDS: 4.59 Total: 2.16 kcal Atomic # 7 Polarization: -103.10 SS G_CDS: -4.14 Total: -107.24 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: -0.07 Total: -33.73 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -78.83 2.70 -76.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261174510.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.882 kcal (2) G-P(sol) polarization free energy of solvation -78.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds