Wall clock time and date at job start Mon Mar 30 2020 04:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99940 * 2 1 4 4 H 1.48502 * 109.46701 * 269.99650 * 3 2 1 5 5 H 1.48490 * 109.47265 * 29.99386 * 3 2 1 6 6 H 1.48499 * 109.47344 * 149.99934 * 3 2 1 7 7 C 1.38814 * 120.00379 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00634 * 168.20906 * 7 2 1 9 9 N 1.36943 * 119.99854 * 348.20448 * 7 2 1 10 10 C 1.47027 * 120.63538 * 332.77638 * 9 7 2 11 11 C 1.53470 * 107.79997 * 224.18444 * 10 9 7 12 12 C 1.52982 * 108.78518 * 298.21051 * 11 10 9 13 13 C 1.50228 * 110.44128 * 50.24864 * 12 11 10 14 14 O 1.21288 * 118.73686 * 159.19631 * 13 12 11 15 15 N 1.34065 * 122.50662 * 339.44044 * 13 12 11 16 16 C 1.39928 * 119.36609 * 181.26597 * 15 13 12 17 17 C 1.38863 * 120.07150 * 129.11056 * 16 15 13 18 18 C 1.38113 * 119.93150 * 179.97438 * 17 16 15 19 19 C 1.38285 * 120.06671 * 0.02562 * 18 17 16 20 20 C 1.38277 * 120.14412 * 0.25074 * 19 18 17 21 21 C 1.38115 * 120.06792 * 359.49025 * 20 19 18 22 22 H 0.96995 * 119.99982 * 355.75667 * 1 2 3 23 23 H 1.09001 * 109.79137 * 343.75387 * 10 9 7 24 24 H 1.08995 * 109.79623 * 104.54726 * 10 9 7 25 25 H 1.09004 * 109.58520 * 57.99687 * 11 10 9 26 26 H 1.08999 * 109.58640 * 178.27943 * 11 10 9 27 27 H 1.08999 * 109.32258 * 170.74012 * 12 11 10 28 28 H 1.08998 * 109.32110 * 290.37099 * 12 11 10 29 29 H 1.08002 * 120.03600 * 359.95730 * 17 16 15 30 30 H 1.08003 * 119.96730 * 179.97438 * 18 17 16 31 31 H 1.08001 * 119.92554 * 179.97438 * 19 18 17 32 32 H 1.07998 * 119.96525 * 179.73131 * 20 19 18 33 33 H 1.07996 * 120.03399 * 180.26168 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0733 -1.2121 -0.1906 9 7 1.3474 -2.3755 0.2435 10 6 0.1231 -2.3896 1.0576 11 6 0.2192 -3.5740 2.0288 12 6 0.2978 -4.8697 1.2193 13 6 1.3605 -4.7646 0.1627 14 8 1.8205 -5.7846 -0.3053 15 7 1.8232 -3.5864 -0.2791 16 6 2.7956 -3.5646 -1.2851 17 6 2.6123 -2.7756 -2.4130 18 6 3.5742 -2.7559 -3.4039 19 6 4.7186 -3.5212 -3.2739 20 6 4.9014 -4.3124 -2.1547 21 6 3.9458 -4.3324 -1.1578 22 1 -0.4850 0.8377 0.0622 23 1 0.0419 -1.4583 1.6182 24 1 -0.7475 -2.5093 0.4129 25 1 1.1143 -3.4718 2.6424 26 1 -0.6626 -3.5939 2.6692 27 1 0.5308 -5.6988 1.8873 28 1 -0.6629 -5.0533 0.7382 29 1 1.7185 -2.1781 -2.5154 30 1 3.4321 -2.1427 -4.2816 31 1 5.4691 -3.5044 -4.0504 32 1 5.7943 -4.9123 -2.0582 33 1 4.0911 -4.9473 -0.2819 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261316145.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:44 Heat of formation + Delta-G solvation = 51.371984 kcal Electronic energy + Delta-G solvation = -18227.618615 eV Core-core repulsion = 15448.333308 eV Total energy + Delta-G solvation = -2779.285307 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.94451 -37.81973 -36.15445 -33.45440 -32.89243 -30.30786 -29.81243 -28.59780 -26.25828 -23.65405 -22.73740 -21.68888 -21.11508 -18.29093 -17.85575 -16.16286 -16.00348 -15.54191 -15.08183 -14.50183 -14.21543 -13.94884 -13.32736 -13.15353 -12.93694 -12.82073 -12.52725 -12.02524 -11.71201 -11.37404 -11.18521 -11.02446 -10.67775 -10.49628 -10.43592 -10.28692 -10.17145 -9.51093 -9.05531 -8.79670 -8.26829 -7.99465 -6.53995 -6.18225 -3.63107 1.89123 2.06219 3.08752 3.20577 3.25817 3.38696 3.40495 4.25108 4.44150 5.02874 5.08540 5.48827 5.49068 5.55335 5.58828 5.63399 5.71660 6.07633 6.09969 6.21827 6.24183 6.30192 6.40476 6.64387 6.76213 6.96705 7.06531 7.11018 7.19082 7.25444 7.34741 7.49081 7.72416 8.26177 8.76520 8.89387 9.62022 10.06791 10.82492 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.017111 B = 0.012235 C = 0.007738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.018749 B = 2287.949469 C = 3617.796639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.012 3.988 3 Si 0.925 3.075 4 H -0.280 1.280 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.237 4.237 8 H 0.079 0.921 9 N -0.406 5.406 10 C 0.187 3.813 11 C -0.150 4.150 12 C -0.123 4.123 13 C 0.493 3.507 14 O -0.579 6.579 15 N -0.348 5.348 16 C 0.163 3.837 17 C -0.106 4.106 18 C -0.117 4.117 19 C -0.144 4.144 20 C -0.119 4.119 21 C -0.110 4.110 22 H 0.264 0.736 23 H 0.104 0.896 24 H 0.033 0.967 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.127 0.873 30 H 0.116 0.884 31 H 0.113 0.887 32 H 0.116 0.884 33 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.557 -3.097 0.202 4.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.191 4.191 3 Si 0.752 3.248 4 H -0.206 1.206 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.368 4.368 8 H 0.097 0.903 9 N -0.219 5.219 10 C 0.062 3.938 11 C -0.189 4.189 12 C -0.163 4.163 13 C 0.282 3.718 14 O -0.459 6.459 15 N -0.150 5.150 16 C 0.070 3.930 17 C -0.126 4.126 18 C -0.136 4.136 19 C -0.163 4.163 20 C -0.138 4.138 21 C -0.131 4.131 22 H 0.074 0.926 23 H 0.122 0.878 24 H 0.051 0.949 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.107 0.893 28 H 0.106 0.894 29 H 0.145 0.855 30 H 0.135 0.865 31 H 0.131 0.869 32 H 0.134 0.866 33 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.598 -3.546 -0.026 4.396 hybrid contribution 0.144 0.960 -0.207 0.993 sum 2.742 -2.586 -0.233 3.776 Atomic orbital electron populations 1.70039 1.05427 1.27230 1.50263 1.25356 0.95715 0.99018 0.99058 0.85931 0.79114 0.81420 0.78306 1.20647 1.20963 1.19784 1.19410 0.91274 0.80785 1.45362 0.90343 1.45276 1.29720 0.94380 1.52538 1.21242 0.85136 0.96976 0.90424 1.22255 1.02081 0.95555 0.99060 1.21480 0.98050 1.00110 0.96693 1.20260 0.84870 0.81870 0.84825 1.90655 1.60913 1.33585 1.60740 1.46144 1.34980 1.01982 1.31918 1.17740 0.89710 0.97718 0.87852 1.21154 1.00136 0.99578 0.91735 1.20904 0.94328 0.99650 0.98686 1.20935 0.98118 0.98861 0.98365 1.20816 0.98667 0.99842 0.94466 1.20966 0.92168 1.00325 0.99650 0.92554 0.87806 0.94877 0.91467 0.91156 0.89285 0.89357 0.85465 0.86547 0.86893 0.86629 0.86430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.73 11.01 55.49 0.61 -22.11 16 2 C 0.01 0.30 5.05 -17.43 -0.09 0.21 16 3 Si 0.92 19.94 29.57 -169.99 -5.03 14.91 16 4 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 7 C -0.24 -6.01 7.81 -15.06 -0.12 -6.13 16 8 H 0.08 2.05 7.30 -52.49 -0.38 1.67 16 9 N -0.41 -9.84 3.67 -59.30 -0.22 -10.06 16 10 C 0.19 4.06 5.03 -3.51 -0.02 4.05 16 11 C -0.15 -2.63 6.19 -26.50 -0.16 -2.80 16 12 C -0.12 -2.20 6.01 -28.12 -0.17 -2.37 16 13 C 0.49 10.99 7.35 -11.53 -0.08 10.91 16 14 O -0.58 -14.01 15.45 5.55 0.09 -13.92 16 15 N -0.35 -8.19 3.57 -10.17 -0.04 -8.22 16 16 C 0.16 3.72 4.56 -83.69 -0.38 3.34 16 17 C -0.11 -2.29 8.50 -39.40 -0.33 -2.62 16 18 C -0.12 -2.13 10.04 -39.61 -0.40 -2.53 16 19 C -0.14 -2.40 10.04 -39.55 -0.40 -2.79 16 20 C -0.12 -2.09 10.04 -39.61 -0.40 -2.49 16 21 C -0.11 -2.29 8.65 -39.39 -0.34 -2.63 16 22 H 0.26 6.50 8.32 -40.82 -0.34 6.16 16 23 H 0.10 2.39 6.43 -51.93 -0.33 2.06 16 24 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 25 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 28 H 0.09 1.46 8.14 -51.93 -0.42 1.03 16 29 H 0.13 2.99 7.75 -52.49 -0.41 2.58 16 30 H 0.12 1.80 8.06 -52.48 -0.42 1.38 16 31 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 32 H 0.12 1.67 8.06 -52.49 -0.42 1.24 16 33 H 0.12 2.46 7.45 -52.49 -0.39 2.07 16 LS Contribution 275.98 15.07 4.16 4.16 Total: -1.00 -28.61 275.98 -7.35 -35.96 By element: Atomic # 1 Polarization: 9.17 SS G_CDS: -4.03 Total: 5.14 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: -2.89 Total: -5.85 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.36 Total: -40.39 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: 0.09 Total: -13.92 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.03 Total: 14.91 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -28.61 -7.35 -35.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261316145.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.327 kcal (2) G-P(sol) polarization free energy of solvation -28.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds