Wall clock time and date at job start Mon Mar 30 2020 04:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99940 * 2 1 4 4 H 1.48502 * 109.46701 * 269.99650 * 3 2 1 5 5 H 1.48490 * 109.47265 * 29.99386 * 3 2 1 6 6 H 1.48499 * 109.47344 * 149.99934 * 3 2 1 7 7 C 1.38814 * 120.00379 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00634 * 168.20906 * 7 2 1 9 9 N 1.36943 * 119.99854 * 348.20448 * 7 2 1 10 10 C 1.47027 * 120.63538 * 332.77638 * 9 7 2 11 11 C 1.53470 * 107.79997 * 224.18444 * 10 9 7 12 12 C 1.52982 * 108.78518 * 298.21051 * 11 10 9 13 13 C 1.50228 * 110.44128 * 50.24864 * 12 11 10 14 14 O 1.21288 * 118.73686 * 159.19631 * 13 12 11 15 15 N 1.34065 * 122.50662 * 339.44044 * 13 12 11 16 16 C 1.39928 * 119.36609 * 181.26597 * 15 13 12 17 17 C 1.38863 * 120.07150 * 129.11056 * 16 15 13 18 18 C 1.38113 * 119.93150 * 179.97438 * 17 16 15 19 19 C 1.38285 * 120.06671 * 0.02562 * 18 17 16 20 20 C 1.38277 * 120.14412 * 0.25074 * 19 18 17 21 21 C 1.38115 * 120.06792 * 359.49025 * 20 19 18 22 22 H 0.96995 * 119.99982 * 355.75667 * 1 2 3 23 23 H 1.09001 * 109.79137 * 343.75387 * 10 9 7 24 24 H 1.08995 * 109.79623 * 104.54726 * 10 9 7 25 25 H 1.09004 * 109.58520 * 57.99687 * 11 10 9 26 26 H 1.08999 * 109.58640 * 178.27943 * 11 10 9 27 27 H 1.08999 * 109.32258 * 170.74012 * 12 11 10 28 28 H 1.08998 * 109.32110 * 290.37099 * 12 11 10 29 29 H 1.08002 * 120.03600 * 359.95730 * 17 16 15 30 30 H 1.08003 * 119.96730 * 179.97438 * 18 17 16 31 31 H 1.08001 * 119.92554 * 179.97438 * 19 18 17 32 32 H 1.07998 * 119.96525 * 179.73131 * 20 19 18 33 33 H 1.07996 * 120.03399 * 180.26168 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0463 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0733 -1.2121 -0.1906 9 7 1.3474 -2.3755 0.2435 10 6 0.1231 -2.3896 1.0576 11 6 0.2192 -3.5740 2.0288 12 6 0.2978 -4.8697 1.2193 13 6 1.3605 -4.7646 0.1627 14 8 1.8205 -5.7846 -0.3053 15 7 1.8232 -3.5864 -0.2791 16 6 2.7956 -3.5646 -1.2851 17 6 2.6123 -2.7756 -2.4130 18 6 3.5742 -2.7559 -3.4039 19 6 4.7186 -3.5212 -3.2739 20 6 4.9014 -4.3124 -2.1547 21 6 3.9458 -4.3324 -1.1578 22 1 -0.4850 0.8377 0.0622 23 1 0.0419 -1.4583 1.6182 24 1 -0.7475 -2.5093 0.4129 25 1 1.1143 -3.4718 2.6424 26 1 -0.6626 -3.5939 2.6692 27 1 0.5308 -5.6988 1.8873 28 1 -0.6629 -5.0533 0.7382 29 1 1.7185 -2.1781 -2.5154 30 1 3.4321 -2.1427 -4.2816 31 1 5.4691 -3.5044 -4.0504 32 1 5.7943 -4.9123 -2.0582 33 1 4.0911 -4.9473 -0.2819 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261316145.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:29:44 Heat of formation + Delta-G solvation = 35.178186 kcal Electronic energy + Delta-G solvation = -18228.320831 eV Core-core repulsion = 15448.333308 eV Total energy + Delta-G solvation = -2779.987522 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.62491 -39.37428 -37.93289 -35.02099 -34.70968 -31.86814 -31.51320 -30.22505 -27.98157 -25.37316 -24.40489 -23.24966 -22.67321 -19.99622 -19.54668 -17.96529 -17.66551 -17.11895 -16.72110 -16.27891 -15.79930 -15.47040 -15.07226 -14.80848 -14.48112 -14.36454 -14.14795 -13.59333 -13.35003 -13.13936 -12.85378 -12.53752 -12.29936 -12.17605 -12.07539 -11.91753 -11.79057 -11.24165 -10.75225 -10.61612 -9.79703 -9.63745 -8.38090 -8.05087 -5.56347 0.35476 0.53088 1.37247 1.46410 1.53084 1.69076 1.71043 2.47204 2.90030 3.14724 3.44647 4.01514 4.06737 4.08669 4.13674 4.17315 4.30135 4.57036 4.61072 4.68884 4.72857 4.86004 4.91337 5.14626 5.22202 5.38448 5.46456 5.50157 5.54190 5.61301 5.63281 5.75540 6.16837 6.37601 6.95400 7.08129 7.79831 8.21971 8.93635 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.017111 B = 0.012235 C = 0.007738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.018749 B = 2287.949469 C = 3617.796639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.024 4.024 3 Si 0.983 3.017 4 H -0.281 1.281 5 H -0.278 1.278 6 H -0.271 1.271 7 C -0.250 4.250 8 H 0.062 0.938 9 N -0.419 5.419 10 C 0.188 3.812 11 C -0.135 4.135 12 C -0.118 4.118 13 C 0.479 3.521 14 O -0.605 6.605 15 N -0.357 5.357 16 C 0.127 3.873 17 C -0.128 4.128 18 C -0.115 4.115 19 C -0.128 4.128 20 C -0.111 4.111 21 C -0.129 4.129 22 H 0.264 0.736 23 H 0.087 0.913 24 H 0.014 0.986 25 H 0.064 0.936 26 H 0.110 0.890 27 H 0.117 0.883 28 H 0.104 0.896 29 H 0.095 0.905 30 H 0.145 0.855 31 H 0.161 0.839 32 H 0.154 0.846 33 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.923 -3.490 -0.179 5.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.225 4.225 3 Si 0.808 3.192 4 H -0.207 1.207 5 H -0.204 1.204 6 H -0.196 1.196 7 C -0.381 4.381 8 H 0.080 0.920 9 N -0.234 5.234 10 C 0.064 3.936 11 C -0.174 4.174 12 C -0.157 4.157 13 C 0.269 3.731 14 O -0.487 6.487 15 N -0.159 5.159 16 C 0.034 3.966 17 C -0.149 4.149 18 C -0.133 4.133 19 C -0.146 4.146 20 C -0.129 4.129 21 C -0.150 4.150 22 H 0.074 0.926 23 H 0.105 0.895 24 H 0.032 0.968 25 H 0.082 0.918 26 H 0.128 0.872 27 H 0.135 0.865 28 H 0.122 0.878 29 H 0.114 0.886 30 H 0.162 0.838 31 H 0.179 0.821 32 H 0.172 0.828 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 3.965 -3.938 -0.405 5.603 hybrid contribution -0.186 0.993 -0.182 1.027 sum 3.779 -2.944 -0.588 4.827 Atomic orbital electron populations 1.70147 1.06388 1.27713 1.51300 1.25965 0.96396 1.01294 0.98801 0.85055 0.78040 0.78049 0.78014 1.20738 1.20358 1.19594 1.19349 0.90855 0.81894 1.46033 0.91974 1.45286 1.30074 0.94200 1.53812 1.21191 0.83706 0.98206 0.90499 1.22130 1.03794 0.93282 0.98149 1.21554 0.97128 1.01104 0.95913 1.21129 0.85441 0.81125 0.85386 1.90618 1.62119 1.34063 1.61927 1.46039 1.35442 1.01975 1.32493 1.18106 0.90523 0.99402 0.88521 1.21061 1.00456 1.00174 0.93210 1.21276 0.93889 0.99768 0.98410 1.21447 0.97927 0.96545 0.98719 1.21290 0.98761 0.99472 0.93395 1.21080 0.92651 1.00532 1.00711 0.92616 0.89456 0.96837 0.91770 0.87156 0.86478 0.87795 0.88649 0.83756 0.82142 0.82825 0.87445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.07 11.01 21.65 0.24 -47.83 16 2 C -0.02 -1.22 5.05 84.86 0.43 -0.79 16 3 Si 0.98 41.47 29.57 68.60 2.03 43.50 16 4 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 5 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 6 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 7 C -0.25 -13.15 7.81 84.03 0.66 -12.49 16 8 H 0.06 3.39 7.30 -2.91 -0.02 3.37 16 9 N -0.42 -21.04 3.67 -341.52 -1.25 -22.29 16 10 C 0.19 8.36 5.03 86.44 0.43 8.80 16 11 C -0.13 -4.56 6.19 30.75 0.19 -4.37 16 12 C -0.12 -4.04 6.01 29.69 0.18 -3.86 16 13 C 0.48 21.61 7.35 87.62 0.64 22.25 16 14 O -0.60 -29.61 15.45 -3.05 -0.05 -29.66 16 15 N -0.36 -17.31 3.57 -304.88 -1.09 -18.40 16 16 C 0.13 5.95 4.56 38.15 0.17 6.12 16 17 C -0.13 -5.70 8.50 22.39 0.19 -5.51 16 18 C -0.12 -3.99 10.04 22.25 0.22 -3.77 16 19 C -0.13 -3.79 10.04 22.29 0.22 -3.57 16 20 C -0.11 -3.58 10.04 22.25 0.22 -3.36 16 21 C -0.13 -5.34 8.65 22.39 0.19 -5.15 16 22 H 0.26 13.28 8.32 -92.71 -0.77 12.51 16 23 H 0.09 4.14 6.43 -2.39 -0.02 4.12 16 24 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 25 H 0.06 2.22 8.14 -2.38 -0.02 2.20 16 26 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 27 H 0.12 3.39 8.14 -2.39 -0.02 3.37 16 28 H 0.10 3.27 8.14 -2.39 -0.02 3.25 16 29 H 0.10 4.76 7.75 -2.91 -0.02 4.73 16 30 H 0.14 4.11 8.06 -2.91 -0.02 4.08 16 31 H 0.16 3.30 8.06 -2.91 -0.02 3.28 16 32 H 0.15 3.77 8.06 -2.91 -0.02 3.74 16 33 H 0.11 4.56 7.45 -2.91 -0.02 4.54 16 Total: -1.00 -64.76 275.98 4.74 -60.02 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 1.10 Total: 20.37 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: 3.76 Total: -5.70 kcal Atomic # 7 Polarization: -86.42 SS G_CDS: -2.10 Total: -88.52 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: -0.05 Total: -29.66 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -64.76 4.74 -60.02 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261316145.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.195 kcal (2) G-P(sol) polarization free energy of solvation -64.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds