Wall clock time and date at job start Mon Mar 30 2020 04:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31469 * 1 3 3 Si 1.86806 * 119.99792 * 2 1 4 4 H 1.48499 * 109.47214 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.46864 * 120.00237 * 3 2 1 6 6 H 1.48501 * 109.47316 * 240.00145 * 3 2 1 7 7 C 1.38874 * 120.00515 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00065 * 203.47835 * 7 2 1 9 9 N 1.37191 * 119.99778 * 23.47081 * 7 2 1 10 10 C 1.34135 * 119.33015 * 42.06420 * 9 7 2 11 11 O 1.21586 * 118.69905 * 0.52814 * 10 9 7 12 12 N 1.34135 * 122.60929 * 180.54752 * 10 9 7 13 13 C 1.46379 * 121.34125 * 359.42825 * 12 10 9 14 14 C 1.53250 * 109.15073 * 29.06273 * 13 12 10 15 15 C 1.46386 * 119.33180 * 221.79373 * 9 7 2 16 16 H 1.09002 * 109.51624 * 270.86664 * 15 9 7 17 17 C 1.50697 * 109.52097 * 31.05679 * 15 9 7 18 18 C 1.38238 * 120.00016 * 39.73275 * 17 15 9 19 19 C 1.38234 * 119.99641 * 179.76078 * 18 17 15 20 20 C 1.38230 * 120.00265 * 0.48358 * 19 18 17 21 21 C 1.38238 * 119.99835 * 359.79283 * 20 19 18 22 22 C 1.38231 * 119.99709 * 219.99763 * 17 15 9 23 23 H 0.97000 * 119.99968 * 176.51654 * 1 2 3 24 24 H 0.97000 * 119.33390 * 179.45511 * 12 10 9 25 25 H 1.08994 * 109.52832 * 148.95969 * 13 12 10 26 26 H 1.09001 * 109.52868 * 269.09765 * 13 12 10 27 27 H 1.08995 * 109.61812 * 64.23965 * 14 13 12 28 28 H 1.08997 * 109.62162 * 184.61290 * 14 13 12 29 29 H 1.07997 * 120.00140 * 359.97438 * 18 17 15 30 30 H 1.08005 * 119.99957 * 180.25105 * 19 18 17 31 31 H 1.08007 * 120.00245 * 179.76485 * 20 19 18 32 32 H 1.08004 * 119.99994 * 179.97438 * 21 20 19 33 33 H 1.07995 * 120.00807 * 0.02562 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3147 0.0000 0.0000 3 14 2.2487 1.6178 0.0000 4 1 1.2836 2.7465 0.0006 5 1 3.1025 1.6964 1.2125 6 1 3.1024 1.6966 -1.2125 7 6 2.0092 -1.2026 -0.0005 8 1 3.0221 -1.2414 0.3721 9 7 1.4084 -2.3414 -0.4743 10 6 0.6701 -2.2783 -1.5924 11 8 0.5626 -1.2093 -2.1615 12 7 0.0454 -3.3478 -2.1073 13 6 0.1452 -4.6649 -1.4764 14 6 0.3547 -4.4856 0.0310 15 6 1.5910 -3.6018 0.2474 16 1 2.4778 -4.1118 -0.1289 17 6 1.7564 -3.3203 1.7186 18 6 0.9890 -2.3441 2.3261 19 6 1.1372 -2.0894 3.6767 20 6 2.0599 -2.8038 4.4176 21 6 2.8313 -3.7761 3.8089 22 6 2.6793 -4.0346 2.4594 23 1 -0.4850 -0.8385 -0.0510 24 1 -0.4830 -3.2465 -2.9145 25 1 -0.7738 -5.2238 -1.6524 26 1 0.9893 -5.2089 -1.9003 27 1 -0.5219 -4.0077 0.4681 28 1 0.5118 -5.4584 0.4970 29 1 0.2712 -1.7829 1.7463 30 1 0.5348 -1.3294 4.1522 31 1 2.1784 -2.6022 5.4720 32 1 3.5525 -4.3341 4.3877 33 1 3.2822 -4.7940 1.9839 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261338653.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:46 Heat of formation + Delta-G solvation = 15.848376 kcal Electronic energy + Delta-G solvation = -18496.710509 eV Core-core repulsion = 15715.884783 eV Total energy + Delta-G solvation = -2780.825726 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.92036 -38.22065 -35.34390 -34.49019 -31.76574 -30.32693 -30.16065 -29.16843 -25.39631 -23.94863 -22.25270 -21.95806 -20.58298 -19.02686 -17.16420 -16.56116 -16.19185 -15.72208 -14.91231 -14.40490 -14.19700 -13.71628 -13.47931 -13.27074 -12.93609 -12.80176 -12.55650 -12.15013 -11.60976 -11.36655 -11.21307 -10.87433 -10.70722 -10.34264 -10.26399 -10.02949 -9.68911 -8.80875 -8.35417 -8.27894 -8.13713 -7.91541 -7.25899 -6.32702 -3.72827 1.94832 2.08556 3.48267 3.59844 3.72453 4.01607 4.40331 4.51314 4.62913 5.04993 5.16206 5.33928 5.43480 5.46590 5.52710 5.62157 5.67904 5.81612 5.89083 5.93396 6.03129 6.13878 6.28811 6.52909 6.58621 6.76011 7.00582 7.20721 7.23915 7.47335 7.67718 7.99550 8.20705 8.53787 9.16693 9.33144 9.73013 10.32637 11.03303 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.017182 B = 0.013465 C = 0.008441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.197441 B = 2078.910866 C = 3316.334203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.043 3.957 3 Si 1.076 2.924 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.287 1.287 7 C -0.411 4.411 8 H 0.067 0.933 9 N -0.471 5.471 10 C 0.664 3.336 11 O -0.584 6.584 12 N -0.759 5.759 13 C 0.120 3.880 14 C -0.143 4.143 15 C 0.176 3.824 16 H 0.057 0.943 17 C -0.065 4.065 18 C -0.051 4.051 19 C -0.135 4.135 20 C -0.127 4.127 21 C -0.140 4.140 22 C -0.120 4.120 23 H 0.268 0.732 24 H 0.399 0.601 25 H 0.068 0.932 26 H 0.050 0.950 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.134 0.866 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.111 0.889 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.433 -10.439 4.866 11.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.483 5.483 2 C -0.169 4.169 3 Si 0.904 3.096 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.538 4.538 8 H 0.085 0.915 9 N -0.199 5.199 10 C 0.367 3.633 11 O -0.462 6.462 12 N -0.420 5.420 13 C -0.006 4.006 14 C -0.182 4.182 15 C 0.071 3.929 16 H 0.075 0.925 17 C -0.066 4.066 18 C -0.069 4.069 19 C -0.153 4.153 20 C -0.145 4.145 21 C -0.158 4.158 22 C -0.139 4.139 23 H 0.080 0.920 24 H 0.234 0.766 25 H 0.086 0.914 26 H 0.068 0.932 27 H 0.091 0.909 28 H 0.099 0.901 29 H 0.152 0.848 30 H 0.131 0.869 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.300 -8.224 4.796 9.609 hybrid contribution 0.089 -1.856 -0.343 1.890 sum 1.389 -10.080 4.453 11.107 Atomic orbital electron populations 1.70640 1.07296 1.31019 1.39382 1.26013 0.95993 1.01905 0.93021 0.83403 0.74927 0.75007 0.76267 1.20860 1.21744 1.21318 1.19556 0.98888 0.86314 1.49030 0.91498 1.42549 1.49921 1.07385 1.20029 1.15809 0.82135 0.83508 0.81821 1.90873 1.66802 1.26864 1.61639 1.45086 1.57469 1.07729 1.31692 1.21267 1.00577 0.85983 0.92742 1.22250 0.99356 1.00475 0.96131 1.20096 0.95954 0.87723 0.89090 0.92503 1.19730 0.96071 0.96401 0.94410 1.21201 0.98129 0.94178 0.93391 1.21102 0.99496 1.00079 0.94629 1.20982 0.97221 0.97202 0.99135 1.20847 1.00595 0.99525 0.94874 1.20859 0.98498 1.00295 0.94216 0.92029 0.76627 0.91404 0.93206 0.90901 0.90128 0.84850 0.86875 0.87188 0.87117 0.87068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -25.72 11.92 55.49 0.66 -25.06 16 2 C 0.04 1.23 3.82 -17.47 -0.07 1.16 16 3 Si 1.08 26.51 29.98 -169.99 -5.10 21.42 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.41 -11.42 6.17 -14.92 -0.09 -11.51 16 8 H 0.07 1.90 7.93 -52.49 -0.42 1.48 16 9 N -0.47 -11.82 2.30 -114.47 -0.26 -12.08 16 10 C 0.66 17.17 6.78 -88.07 -0.60 16.57 16 11 O -0.58 -17.85 14.54 5.29 0.08 -17.77 16 12 N -0.76 -15.12 5.58 -65.53 -0.37 -15.49 16 13 C 0.12 1.83 7.20 -3.98 -0.03 1.80 16 14 C -0.14 -2.35 5.48 -26.34 -0.14 -2.49 16 15 C 0.18 3.53 3.04 -68.89 -0.21 3.32 16 16 H 0.06 1.10 8.01 -51.93 -0.42 0.68 16 17 C -0.07 -1.29 4.23 -104.63 -0.44 -1.73 16 18 C -0.05 -1.08 8.02 -39.58 -0.32 -1.39 16 19 C -0.13 -2.50 10.05 -39.59 -0.40 -2.90 16 20 C -0.13 -2.05 10.05 -39.58 -0.40 -2.45 16 21 C -0.14 -2.19 10.05 -39.58 -0.40 -2.59 16 22 C -0.12 -2.03 9.67 -39.58 -0.38 -2.41 16 23 H 0.27 8.21 6.29 -40.82 -0.26 7.95 16 24 H 0.40 7.25 8.88 -40.82 -0.36 6.89 16 25 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.13 3.29 5.68 -52.49 -0.30 2.99 16 30 H 0.11 1.94 8.06 -52.48 -0.42 1.51 16 31 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 32 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 33 H 0.11 1.61 8.04 -52.49 -0.42 1.19 16 LS Contribution 271.77 15.07 4.10 4.10 Total: -1.00 -33.85 271.77 -8.29 -42.14 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -3.93 Total: 7.38 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -3.47 Total: -4.64 kcal Atomic # 7 Polarization: -52.66 SS G_CDS: 0.03 Total: -52.63 kcal Atomic # 8 Polarization: -17.85 SS G_CDS: 0.08 Total: -17.77 kcal Atomic # 14 Polarization: 26.51 SS G_CDS: -5.10 Total: 21.42 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -33.85 -8.29 -42.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261338653.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.988 kcal (2) G-P(sol) polarization free energy of solvation -33.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds