Wall clock time and date at job start Mon Mar 30 2020 04:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31469 * 1 3 3 Si 1.86806 * 119.99792 * 2 1 4 4 H 1.48499 * 109.47214 * 0.02562 * 3 2 1 5 5 H 1.48507 * 109.46864 * 120.00237 * 3 2 1 6 6 H 1.48501 * 109.47316 * 240.00145 * 3 2 1 7 7 C 1.38874 * 120.00515 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00065 * 203.47835 * 7 2 1 9 9 N 1.37191 * 119.99778 * 23.47081 * 7 2 1 10 10 C 1.34135 * 119.33015 * 42.06420 * 9 7 2 11 11 O 1.21586 * 118.69905 * 0.52814 * 10 9 7 12 12 N 1.34135 * 122.60929 * 180.54752 * 10 9 7 13 13 C 1.46379 * 121.34125 * 359.42825 * 12 10 9 14 14 C 1.53250 * 109.15073 * 29.06273 * 13 12 10 15 15 C 1.46386 * 119.33180 * 221.79373 * 9 7 2 16 16 H 1.09002 * 109.51624 * 270.86664 * 15 9 7 17 17 C 1.50697 * 109.52097 * 31.05679 * 15 9 7 18 18 C 1.38238 * 120.00016 * 39.73275 * 17 15 9 19 19 C 1.38234 * 119.99641 * 179.76078 * 18 17 15 20 20 C 1.38230 * 120.00265 * 0.48358 * 19 18 17 21 21 C 1.38238 * 119.99835 * 359.79283 * 20 19 18 22 22 C 1.38231 * 119.99709 * 219.99763 * 17 15 9 23 23 H 0.97000 * 119.99968 * 176.51654 * 1 2 3 24 24 H 0.97000 * 119.33390 * 179.45511 * 12 10 9 25 25 H 1.08994 * 109.52832 * 148.95969 * 13 12 10 26 26 H 1.09001 * 109.52868 * 269.09765 * 13 12 10 27 27 H 1.08995 * 109.61812 * 64.23965 * 14 13 12 28 28 H 1.08997 * 109.62162 * 184.61290 * 14 13 12 29 29 H 1.07997 * 120.00140 * 359.97438 * 18 17 15 30 30 H 1.08005 * 119.99957 * 180.25105 * 19 18 17 31 31 H 1.08007 * 120.00245 * 179.76485 * 20 19 18 32 32 H 1.08004 * 119.99994 * 179.97438 * 21 20 19 33 33 H 1.07995 * 120.00807 * 0.02562 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3147 0.0000 0.0000 3 14 2.2487 1.6178 0.0000 4 1 1.2836 2.7465 0.0006 5 1 3.1025 1.6964 1.2125 6 1 3.1024 1.6966 -1.2125 7 6 2.0092 -1.2026 -0.0005 8 1 3.0221 -1.2414 0.3721 9 7 1.4084 -2.3414 -0.4743 10 6 0.6701 -2.2783 -1.5924 11 8 0.5626 -1.2093 -2.1615 12 7 0.0454 -3.3478 -2.1073 13 6 0.1452 -4.6649 -1.4764 14 6 0.3547 -4.4856 0.0310 15 6 1.5910 -3.6018 0.2474 16 1 2.4778 -4.1118 -0.1289 17 6 1.7564 -3.3203 1.7186 18 6 0.9890 -2.3441 2.3261 19 6 1.1372 -2.0894 3.6767 20 6 2.0599 -2.8038 4.4176 21 6 2.8313 -3.7761 3.8089 22 6 2.6793 -4.0346 2.4594 23 1 -0.4850 -0.8385 -0.0510 24 1 -0.4830 -3.2465 -2.9145 25 1 -0.7738 -5.2238 -1.6524 26 1 0.9893 -5.2089 -1.9003 27 1 -0.5219 -4.0077 0.4681 28 1 0.5118 -5.4584 0.4970 29 1 0.2712 -1.7829 1.7463 30 1 0.5348 -1.3294 4.1522 31 1 2.1784 -2.6022 5.4720 32 1 3.5525 -4.3341 4.3877 33 1 3.2822 -4.7940 1.9839 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261338653.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:46 Heat of formation + Delta-G solvation = -7.352795 kcal Electronic energy + Delta-G solvation = -18497.716587 eV Core-core repulsion = 15715.884783 eV Total energy + Delta-G solvation = -2781.831804 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.62534 -39.72420 -37.08643 -36.26717 -33.61481 -32.12190 -31.55414 -30.61117 -27.14223 -25.71522 -23.87590 -23.35000 -22.05491 -20.81085 -18.98008 -18.23574 -17.71076 -17.40632 -16.43662 -16.02680 -15.69923 -15.60504 -15.19464 -15.04672 -14.40351 -14.23629 -13.97715 -13.56361 -13.46894 -12.90772 -12.69754 -12.65576 -12.25638 -11.98632 -11.80903 -11.76496 -11.66068 -10.80737 -10.33048 -9.77787 -9.65490 -9.54167 -9.18258 -8.52039 -5.88344 0.58012 0.70879 1.47626 1.61574 1.75368 2.30212 2.61575 2.70977 3.04175 3.34837 3.52865 3.80163 3.97477 4.11105 4.21752 4.29159 4.39233 4.45655 4.57789 4.71044 4.74235 4.80415 4.91415 5.16671 5.24103 5.34870 5.59615 5.68433 5.79648 6.00350 6.05026 6.29146 6.34640 6.41005 7.20921 7.29401 7.74115 8.36152 8.83909 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.017182 B = 0.013465 C = 0.008441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.197441 B = 2078.910866 C = 3316.334203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C -0.001 4.001 3 Si 1.109 2.891 4 H -0.288 1.288 5 H -0.262 1.262 6 H -0.288 1.288 7 C -0.406 4.406 8 H 0.056 0.944 9 N -0.482 5.482 10 C 0.654 3.346 11 O -0.646 6.646 12 N -0.751 5.751 13 C 0.116 3.884 14 C -0.136 4.136 15 C 0.168 3.832 16 H 0.070 0.930 17 C -0.083 4.083 18 C -0.083 4.083 19 C -0.149 4.149 20 C -0.122 4.122 21 C -0.129 4.129 22 C -0.119 4.119 23 H 0.252 0.748 24 H 0.406 0.594 25 H 0.109 0.891 26 H 0.075 0.925 27 H 0.047 0.953 28 H 0.124 0.876 29 H 0.088 0.912 30 H 0.114 0.886 31 H 0.144 0.856 32 H 0.152 0.848 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.064 -13.181 6.358 14.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.207 4.207 3 Si 0.932 3.068 4 H -0.214 1.214 5 H -0.187 1.187 6 H -0.214 1.214 7 C -0.534 4.534 8 H 0.074 0.926 9 N -0.209 5.209 10 C 0.356 3.644 11 O -0.528 6.528 12 N -0.411 5.411 13 C -0.008 4.008 14 C -0.174 4.174 15 C 0.064 3.936 16 H 0.087 0.913 17 C -0.084 4.084 18 C -0.102 4.102 19 C -0.167 4.167 20 C -0.140 4.140 21 C -0.147 4.147 22 C -0.137 4.137 23 H 0.063 0.937 24 H 0.242 0.758 25 H 0.127 0.873 26 H 0.093 0.907 27 H 0.066 0.934 28 H 0.143 0.857 29 H 0.106 0.894 30 H 0.132 0.868 31 H 0.162 0.838 32 H 0.170 0.830 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.937 -11.047 6.316 13.059 hybrid contribution -0.369 -1.155 -0.749 1.425 sum 2.567 -12.201 5.567 13.655 Atomic orbital electron populations 1.70726 1.08190 1.29975 1.42500 1.27081 0.96077 1.04876 0.92709 0.83002 0.74340 0.72181 0.77237 1.21360 1.18726 1.21442 1.19485 0.98273 0.87601 1.48025 0.92591 1.42660 1.49402 1.08505 1.20334 1.16150 0.82373 0.84016 0.81872 1.90806 1.68938 1.29686 1.63406 1.44937 1.56091 1.08300 1.31747 1.21655 1.03773 0.83738 0.91607 1.22252 0.96549 1.01428 0.97203 1.20370 0.98101 0.85938 0.89160 0.91251 1.19793 0.97152 0.97070 0.94365 1.20972 0.98986 0.95704 0.94489 1.21245 1.00639 1.00876 0.93957 1.21361 0.95753 0.96295 1.00614 1.21350 1.00162 0.98635 0.94553 1.21196 0.97474 1.00198 0.94869 0.93703 0.75805 0.87283 0.90721 0.93365 0.85741 0.89358 0.86779 0.83780 0.82989 0.84121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -56.08 11.92 21.65 0.26 -55.82 16 2 C 0.00 -0.08 3.82 84.90 0.32 0.24 16 3 Si 1.11 54.95 29.98 68.60 2.06 57.01 16 4 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 5 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 6 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 7 C -0.41 -23.26 6.17 84.01 0.52 -22.74 16 8 H 0.06 3.25 7.93 -2.91 -0.02 3.23 16 9 N -0.48 -24.68 2.30 -634.68 -1.46 -26.14 16 10 C 0.65 34.66 6.78 179.46 1.22 35.88 16 11 O -0.65 -41.23 14.54 -3.99 -0.06 -41.29 16 12 N -0.75 -29.61 5.58 -479.85 -2.68 -32.28 16 13 C 0.12 3.19 7.20 86.49 0.62 3.81 16 14 C -0.14 -4.16 5.48 30.84 0.17 -3.99 16 15 C 0.17 6.55 3.04 44.43 0.13 6.68 16 16 H 0.07 2.51 8.01 -2.39 -0.02 2.49 16 17 C -0.08 -3.19 4.23 -19.87 -0.08 -3.28 16 18 C -0.08 -3.60 8.02 22.27 0.18 -3.42 16 19 C -0.15 -5.49 10.05 22.27 0.22 -5.26 16 20 C -0.12 -3.56 10.05 22.27 0.22 -3.33 16 21 C -0.13 -3.44 10.05 22.27 0.22 -3.22 16 22 C -0.12 -3.60 9.67 22.27 0.22 -3.39 16 23 H 0.25 16.49 6.29 -92.71 -0.58 15.91 16 24 H 0.41 14.66 8.88 -92.71 -0.82 13.84 16 25 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 29 H 0.09 4.65 5.68 -2.91 -0.02 4.64 16 30 H 0.11 4.00 8.06 -2.91 -0.02 3.97 16 31 H 0.14 3.18 8.06 -2.91 -0.02 3.16 16 32 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 33 H 0.14 3.38 8.04 -2.91 -0.02 3.36 16 Total: -1.00 -79.37 271.77 2.57 -76.80 By element: Atomic # 1 Polarization: 23.25 SS G_CDS: 0.48 Total: 23.74 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: 3.97 Total: -2.02 kcal Atomic # 7 Polarization: -110.36 SS G_CDS: -3.88 Total: -114.24 kcal Atomic # 8 Polarization: -41.23 SS G_CDS: -0.06 Total: -41.29 kcal Atomic # 14 Polarization: 54.95 SS G_CDS: 2.06 Total: 57.01 kcal Total: -79.37 2.57 -76.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261338653.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.450 kcal (2) G-P(sol) polarization free energy of solvation -79.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds