Wall clock time and date at job start Mon Mar 30 2020 04:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47474 * 270.00343 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46949 * 179.97438 * 9 7 2 11 11 N 1.36333 * 123.52697 * 94.99533 * 10 9 7 12 12 C 1.48135 * 107.85493 * 198.53985 * 11 10 9 13 13 H 1.08999 * 110.94984 * 91.86077 * 12 11 10 14 14 C 1.50704 * 110.95105 * 215.53895 * 12 11 10 15 15 C 1.38233 * 119.99881 * 38.27158 * 14 12 11 16 16 C 1.38234 * 119.99908 * 179.76851 * 15 14 12 17 17 C 1.38237 * 119.99793 * 0.48033 * 16 15 14 18 18 C 1.38229 * 119.99981 * 359.79422 * 17 16 15 19 19 C 1.38235 * 120.00438 * 359.95458 * 18 17 16 20 20 C 1.54797 * 101.87611 * 333.68344 * 12 11 10 21 21 C 1.34592 * 123.52591 * 274.70956 * 10 9 7 22 22 O 1.21283 * 126.04165 * 358.40186 * 21 10 9 23 23 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 25 25 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 26 26 H 1.00899 * 111.00298 * 320.33680 * 11 10 9 27 27 H 1.08001 * 120.00009 * 0.02562 * 15 14 12 28 28 H 1.07999 * 120.00356 * 180.25225 * 16 15 14 29 29 H 1.07998 * 119.99811 * 179.76534 * 17 16 15 30 30 H 1.08005 * 119.99912 * 179.97438 * 18 17 16 31 31 H 1.07999 * 120.00418 * 180.02562 * 19 18 17 32 32 H 1.08996 * 110.85396 * 142.17889 * 20 12 11 33 33 H 1.09004 * 110.85117 * 265.61439 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 7 2.2030 -3.6127 -0.0027 11 7 2.6171 -4.2504 1.1289 12 6 3.8676 -4.9772 0.8089 13 1 4.7414 -4.3604 1.0186 14 6 3.9396 -6.2820 1.5597 15 6 2.7978 -7.0402 1.7390 16 6 2.8647 -8.2393 2.4234 17 6 4.0717 -8.6753 2.9372 18 6 5.2125 -7.9144 2.7628 19 6 5.1465 -6.7178 2.0738 20 6 3.7137 -5.2216 -0.7119 21 6 2.7561 -4.1168 -1.1214 22 8 2.5313 -3.7513 -2.2558 23 1 -0.4849 0.8400 0.0004 24 1 0.6240 -2.5575 0.8880 25 1 0.6247 -2.5562 -0.8920 26 1 2.7629 -3.5939 1.8812 27 1 1.8541 -6.6977 1.3407 28 1 1.9734 -8.8337 2.5600 29 1 4.1233 -9.6103 3.4752 30 1 6.1554 -8.2549 3.1645 31 1 6.0379 -6.1234 1.9372 32 1 4.6720 -5.1165 -1.2206 33 1 3.2791 -6.2023 -0.9053 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261351384.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:00 Heat of formation + Delta-G solvation = 24.342741 kcal Electronic energy + Delta-G solvation = -17193.349658 eV Core-core repulsion = 14412.892275 eV Total energy + Delta-G solvation = -2780.457383 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.38331 -38.81484 -36.28357 -33.80568 -32.41263 -30.88295 -29.92256 -28.85180 -26.91561 -23.81087 -22.67242 -22.49257 -20.69275 -19.25399 -17.01399 -16.86299 -16.53824 -15.81184 -15.30992 -14.74592 -14.57392 -14.28510 -13.54338 -13.40191 -13.17074 -13.01072 -12.83586 -12.55116 -12.02266 -11.71747 -11.44531 -11.28610 -11.05839 -10.93894 -10.76879 -10.34877 -10.28117 -9.41683 -9.17567 -8.89933 -8.63595 -8.55513 -7.14656 -6.15491 -4.24402 1.31064 1.43043 3.20302 3.24923 3.31292 3.34511 3.53116 3.81187 4.33669 4.49875 4.79691 4.87876 4.96632 5.05446 5.14038 5.17972 5.22858 5.29216 5.54580 5.62133 5.88417 5.96396 6.05200 6.09156 6.45013 6.51781 6.54358 6.77553 7.00810 7.02878 7.26045 7.66857 7.87080 8.02490 8.49524 8.73777 9.04781 9.42910 10.90602 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.035232 B = 0.005203 C = 0.005075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.535593 B = 5380.441120 C = 5516.227305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.066 3.934 3 Si 0.902 3.098 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.542 4.542 8 H 0.057 0.943 9 C 0.258 3.742 10 N -0.450 5.450 11 N -0.431 5.431 12 C 0.090 3.910 13 H 0.074 0.926 14 C -0.064 4.064 15 C -0.085 4.085 16 C -0.125 4.125 17 C -0.123 4.123 18 C -0.126 4.126 19 C -0.113 4.113 20 C -0.152 4.152 21 C 0.505 3.495 22 O -0.532 6.532 23 H 0.266 0.734 24 H 0.045 0.955 25 H 0.051 0.949 26 H 0.345 0.655 27 H 0.133 0.867 28 H 0.120 0.880 29 H 0.117 0.883 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.098 0.902 33 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.709 -14.799 6.830 18.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.729 3.271 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.581 4.581 8 H 0.075 0.925 9 C 0.139 3.861 10 N -0.271 5.271 11 N -0.155 5.155 12 C -0.020 4.020 13 H 0.092 0.908 14 C -0.065 4.065 15 C -0.103 4.103 16 C -0.143 4.143 17 C -0.142 4.142 18 C -0.144 4.144 19 C -0.131 4.131 20 C -0.193 4.193 21 C 0.289 3.711 22 O -0.408 6.408 23 H 0.076 0.924 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.164 0.836 27 H 0.151 0.849 28 H 0.138 0.862 29 H 0.135 0.865 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.116 0.884 33 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 7.892 -14.926 6.142 17.967 hybrid contribution 1.196 1.673 0.214 2.068 sum 9.088 -13.253 6.355 17.281 Atomic orbital electron populations 1.69923 1.06008 1.27400 1.49420 1.24917 0.94917 0.99312 0.94575 0.86437 0.79585 0.82688 0.78361 1.20372 1.20944 1.19930 1.21431 0.93351 0.90687 1.52614 0.92511 1.19467 0.86712 0.80446 0.99452 1.48320 1.43338 1.34094 1.01384 1.63910 1.27382 1.24939 0.99302 1.21685 0.92932 0.93316 0.94044 0.90827 1.19452 0.93685 0.95004 0.98378 1.21131 0.98784 0.93282 0.97128 1.21195 0.97755 0.96657 0.98732 1.21136 0.93073 0.99757 1.00192 1.21038 0.98374 0.95150 0.99829 1.20999 0.97204 0.96800 0.98113 1.22759 1.01396 1.00705 0.94434 1.20555 0.82289 0.83390 0.84847 1.90698 1.65129 1.64813 1.20129 0.92409 0.93748 0.93155 0.83598 0.84912 0.86166 0.86465 0.86305 0.86181 0.88361 0.87774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.84 13.29 55.43 0.74 -25.10 16 2 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 3 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 5 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.54 -15.08 9.38 -34.44 -0.32 -15.41 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.26 6.66 5.75 -5.19 -0.03 6.63 16 10 N -0.45 -9.77 3.35 -61.10 -0.20 -9.97 16 11 N -0.43 -7.46 6.75 -4.13 -0.03 -7.49 16 12 C 0.09 1.29 3.79 -67.24 -0.26 1.03 16 13 H 0.07 0.98 8.05 -51.93 -0.42 0.57 16 14 C -0.06 -0.80 5.02 -104.62 -0.52 -1.32 16 15 C -0.08 -1.06 9.18 -39.58 -0.36 -1.43 16 16 C -0.13 -1.34 10.05 -39.58 -0.40 -1.74 16 17 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 18 C -0.13 -1.23 10.05 -39.59 -0.40 -1.63 16 19 C -0.11 -1.22 9.69 -39.58 -0.38 -1.60 16 20 C -0.15 -2.37 6.62 -26.38 -0.17 -2.55 16 21 C 0.50 10.97 8.16 -10.51 -0.09 10.88 16 22 O -0.53 -13.79 17.68 5.56 0.10 -13.69 16 23 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 24 H 0.04 1.16 8.14 -51.93 -0.42 0.73 16 25 H 0.05 1.45 8.01 -51.93 -0.42 1.03 16 26 H 0.35 5.87 8.93 -181.55 -1.62 4.25 16 27 H 0.13 1.79 7.72 -52.49 -0.41 1.38 16 28 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 29 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 30 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 31 H 0.12 1.10 8.05 -52.49 -0.42 0.68 16 32 H 0.10 1.36 8.14 -51.93 -0.42 0.93 16 33 H 0.10 1.49 7.77 -51.93 -0.40 1.08 16 LS Contribution 290.21 15.07 4.37 4.37 Total: -1.00 -31.69 290.21 -8.82 -40.51 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -5.35 Total: 1.90 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -3.43 Total: -6.98 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.50 Total: -42.56 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: 0.10 Total: -13.69 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.69 -8.82 -40.51 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261351384.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.853 kcal (2) G-P(sol) polarization free energy of solvation -31.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds