Wall clock time and date at job start Mon Mar 30 2020 04:25:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48501 * 109.47474 * 270.00343 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 N 1.46500 * 109.46949 * 179.97438 * 9 7 2 11 11 N 1.36333 * 123.52697 * 94.99533 * 10 9 7 12 12 C 1.48135 * 107.85493 * 198.53985 * 11 10 9 13 13 H 1.08999 * 110.94984 * 91.86077 * 12 11 10 14 14 C 1.50704 * 110.95105 * 215.53895 * 12 11 10 15 15 C 1.38233 * 119.99881 * 38.27158 * 14 12 11 16 16 C 1.38234 * 119.99908 * 179.76851 * 15 14 12 17 17 C 1.38237 * 119.99793 * 0.48033 * 16 15 14 18 18 C 1.38229 * 119.99981 * 359.79422 * 17 16 15 19 19 C 1.38235 * 120.00438 * 359.95458 * 18 17 16 20 20 C 1.54797 * 101.87611 * 333.68344 * 12 11 10 21 21 C 1.34592 * 123.52591 * 274.70956 * 10 9 7 22 22 O 1.21283 * 126.04165 * 358.40186 * 21 10 9 23 23 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 25 25 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 26 26 H 1.00899 * 111.00298 * 320.33680 * 11 10 9 27 27 H 1.08001 * 120.00009 * 0.02562 * 15 14 12 28 28 H 1.07999 * 120.00356 * 180.25225 * 16 15 14 29 29 H 1.07998 * 119.99811 * 179.76534 * 17 16 15 30 30 H 1.08005 * 119.99912 * 179.97438 * 18 17 16 31 31 H 1.07999 * 120.00418 * 180.02562 * 19 18 17 32 32 H 1.08996 * 110.85396 * 142.17889 * 20 12 11 33 33 H 1.09004 * 110.85117 * 265.61439 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 7 2.2030 -3.6127 -0.0027 11 7 2.6171 -4.2504 1.1289 12 6 3.8676 -4.9772 0.8089 13 1 4.7414 -4.3604 1.0186 14 6 3.9396 -6.2820 1.5597 15 6 2.7978 -7.0402 1.7390 16 6 2.8647 -8.2393 2.4234 17 6 4.0717 -8.6753 2.9372 18 6 5.2125 -7.9144 2.7628 19 6 5.1465 -6.7178 2.0738 20 6 3.7137 -5.2216 -0.7119 21 6 2.7561 -4.1168 -1.1214 22 8 2.5313 -3.7513 -2.2558 23 1 -0.4849 0.8400 0.0004 24 1 0.6240 -2.5575 0.8880 25 1 0.6247 -2.5562 -0.8920 26 1 2.7629 -3.5939 1.8812 27 1 1.8541 -6.6977 1.3407 28 1 1.9734 -8.8337 2.5600 29 1 4.1233 -9.6103 3.4752 30 1 6.1554 -8.2549 3.1645 31 1 6.0379 -6.1234 1.9372 32 1 4.6720 -5.1165 -1.2206 33 1 3.2791 -6.2023 -0.9053 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261351384.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:00 Heat of formation + Delta-G solvation = 4.019373 kcal Electronic energy + Delta-G solvation = -17194.230945 eV Core-core repulsion = 14412.892275 eV Total energy + Delta-G solvation = -2781.338670 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.84821 -39.83084 -37.98084 -35.64192 -34.04764 -31.70384 -31.24488 -30.37959 -28.69211 -25.41743 -24.21159 -23.33508 -21.77431 -20.88492 -18.81912 -18.45759 -17.78224 -17.26473 -16.69506 -16.37096 -15.82311 -15.57943 -15.16475 -14.66081 -14.53058 -14.13675 -14.07586 -13.94324 -13.65451 -13.21975 -13.01258 -12.95564 -12.69468 -12.32909 -12.24136 -11.86376 -11.80801 -11.26889 -10.87806 -10.70264 -9.70784 -9.57196 -8.84875 -8.26706 -6.48467 0.46094 0.61838 1.35023 1.38105 1.46895 1.56042 1.89286 2.33916 2.91673 2.99055 3.21656 3.57414 3.71379 3.97326 4.02835 4.25097 4.29265 4.42117 4.63755 4.74285 4.77338 4.82227 4.93406 4.97692 5.10040 5.17582 5.29676 5.54543 5.66285 5.73361 5.81545 5.87142 6.18356 6.21698 6.58690 6.80019 7.17217 7.36982 8.76194 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.035232 B = 0.005203 C = 0.005075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.535593 B = 5380.441120 C = 5516.227305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.015 3.985 3 Si 0.972 3.028 4 H -0.279 1.279 5 H -0.272 1.272 6 H -0.263 1.263 7 C -0.558 4.558 8 H 0.054 0.946 9 C 0.271 3.729 10 N -0.455 5.455 11 N -0.431 5.431 12 C 0.099 3.901 13 H 0.090 0.910 14 C -0.077 4.077 15 C -0.103 4.103 16 C -0.132 4.132 17 C -0.121 4.121 18 C -0.125 4.125 19 C -0.113 4.113 20 C -0.134 4.134 21 C 0.486 3.514 22 O -0.586 6.586 23 H 0.271 0.729 24 H 0.036 0.964 25 H 0.009 0.991 26 H 0.348 0.652 27 H 0.113 0.887 28 H 0.134 0.866 29 H 0.144 0.856 30 H 0.147 0.853 31 H 0.139 0.861 32 H 0.124 0.876 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.225 -15.836 8.399 21.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.185 4.185 3 Si 0.796 3.204 4 H -0.205 1.205 5 H -0.197 1.197 6 H -0.187 1.187 7 C -0.597 4.597 8 H 0.072 0.928 9 C 0.151 3.849 10 N -0.274 5.274 11 N -0.155 5.155 12 C -0.009 4.009 13 H 0.108 0.892 14 C -0.078 4.078 15 C -0.121 4.121 16 C -0.150 4.150 17 C -0.139 4.139 18 C -0.143 4.143 19 C -0.131 4.131 20 C -0.174 4.174 21 C 0.273 3.727 22 O -0.466 6.466 23 H 0.080 0.920 24 H 0.054 0.946 25 H 0.027 0.973 26 H 0.167 0.833 27 H 0.131 0.869 28 H 0.152 0.848 29 H 0.161 0.839 30 H 0.165 0.835 31 H 0.157 0.843 32 H 0.142 0.858 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 10.423 -15.996 7.743 20.603 hybrid contribution 0.395 1.872 -0.210 1.925 sum 10.818 -14.124 7.533 19.320 Atomic orbital electron populations 1.70034 1.07568 1.28623 1.49832 1.25841 0.95822 1.03050 0.93821 0.85349 0.78695 0.78057 0.78308 1.20475 1.19707 1.18673 1.21653 0.93267 0.91726 1.53005 0.92821 1.18938 0.87160 0.81822 0.96983 1.48180 1.42757 1.33141 1.03288 1.63884 1.29987 1.24048 0.97606 1.21787 0.91742 0.94137 0.93278 0.89161 1.19297 0.94642 0.94136 0.99769 1.21085 0.98177 0.94486 0.98393 1.21400 0.99085 0.96134 0.98413 1.21502 0.92487 1.00577 0.99294 1.21409 0.99567 0.94461 0.98872 1.21226 0.96967 0.97421 0.97507 1.22752 1.00666 0.98547 0.95471 1.21623 0.82711 0.84406 0.83925 1.90647 1.66994 1.66821 1.22125 0.91998 0.94590 0.97322 0.83326 0.86904 0.84828 0.83855 0.83548 0.84327 0.85820 0.86263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.74 13.29 21.45 0.28 -54.45 16 2 C 0.02 0.85 5.46 84.66 0.46 1.32 16 3 Si 0.97 44.09 29.54 68.60 2.03 46.11 16 4 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 5 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 6 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 7 C -0.56 -31.83 9.38 25.60 0.24 -31.59 16 8 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 9 C 0.27 14.75 5.75 85.63 0.49 15.24 16 10 N -0.46 -20.37 3.35 -465.70 -1.56 -21.93 16 11 N -0.43 -14.95 6.75 -166.99 -1.13 -16.08 16 12 C 0.10 2.68 3.79 44.55 0.17 2.85 16 13 H 0.09 2.17 8.05 -2.39 -0.02 2.15 16 14 C -0.08 -1.77 5.02 -19.86 -0.10 -1.87 16 15 C -0.10 -2.46 9.18 22.27 0.20 -2.25 16 16 C -0.13 -2.55 10.05 22.27 0.22 -2.33 16 17 C -0.12 -1.92 10.05 22.27 0.22 -1.69 16 18 C -0.13 -1.93 10.05 22.27 0.22 -1.71 16 19 C -0.11 -2.04 9.69 22.27 0.22 -1.83 16 20 C -0.13 -4.02 6.62 30.82 0.20 -3.82 16 21 C 0.49 21.64 8.16 88.05 0.72 22.36 16 22 O -0.59 -31.69 17.68 -3.04 -0.05 -31.75 16 23 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 24 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 25 H 0.01 0.54 8.01 -2.39 -0.02 0.52 16 26 H 0.35 11.83 8.93 -210.71 -1.88 9.95 16 27 H 0.11 3.09 7.72 -2.91 -0.02 3.06 16 28 H 0.13 2.12 8.06 -2.91 -0.02 2.09 16 29 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 30 H 0.15 1.46 8.06 -2.91 -0.02 1.44 16 31 H 0.14 1.96 8.05 -2.91 -0.02 1.94 16 32 H 0.12 3.12 8.14 -2.39 -0.02 3.10 16 33 H 0.12 3.25 7.77 -2.39 -0.02 3.23 16 Total: -1.00 -70.94 290.21 2.08 -68.86 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -0.77 Total: 14.55 kcal Atomic # 6 Polarization: -8.59 SS G_CDS: 3.28 Total: -5.31 kcal Atomic # 7 Polarization: -90.06 SS G_CDS: -2.40 Total: -92.46 kcal Atomic # 8 Polarization: -31.69 SS G_CDS: -0.05 Total: -31.75 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Total: -70.94 2.08 -68.86 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261351384.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.880 kcal (2) G-P(sol) polarization free energy of solvation -70.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds