Wall clock time and date at job start Mon Mar 30 2020 04:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31478 * 1 3 3 Si 1.86798 * 119.99988 * 2 1 4 4 H 1.48493 * 109.47719 * 270.00253 * 3 2 1 5 5 H 1.48504 * 109.46933 * 30.00687 * 3 2 1 6 6 H 1.48507 * 109.46811 * 149.99914 * 3 2 1 7 7 C 1.38875 * 119.99461 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99924 * 164.80947 * 7 2 1 9 9 N 1.37187 * 120.00421 * 344.80430 * 7 2 1 10 10 C 1.46380 * 119.32973 * 337.34247 * 9 7 2 11 11 C 1.53217 * 109.15044 * 209.10300 * 10 9 7 12 12 C 1.53237 * 108.57528 * 304.51579 * 11 10 9 13 13 H 1.09000 * 109.57750 * 295.53383 * 12 11 10 14 14 C 1.50699 * 109.52614 * 175.37120 * 12 11 10 15 15 C 1.38233 * 119.99793 * 280.04893 * 14 12 11 16 16 C 1.38237 * 120.00033 * 180.36765 * 15 14 12 17 17 C 1.38237 * 119.99817 * 359.86092 * 16 15 14 18 18 C 1.38234 * 119.99982 * 0.09396 * 17 16 15 19 19 C 1.38230 * 120.00321 * 359.97438 * 18 17 16 20 20 N 1.46376 * 109.15322 * 55.46548 * 12 11 10 21 21 C 1.34133 * 119.33243 * 157.36495 * 9 7 2 22 22 O 1.21586 * 118.69390 * 359.40898 * 21 9 7 23 23 H 0.97002 * 119.99810 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.52419 * 328.98514 * 10 9 7 25 25 H 1.08999 * 109.52199 * 89.11444 * 10 9 7 26 26 H 1.09005 * 109.62785 * 184.78124 * 11 10 9 27 27 H 1.09006 * 109.60561 * 64.23207 * 11 10 9 28 28 H 1.07998 * 120.00147 * 0.27528 * 15 14 12 29 29 H 1.08002 * 120.00069 * 179.97438 * 16 15 14 30 30 H 1.08008 * 119.99981 * 180.02562 * 17 16 15 31 31 H 1.08007 * 119.99662 * 179.97438 * 18 17 16 32 32 H 1.07996 * 120.00429 * 179.97438 * 19 18 17 33 33 H 0.97007 * 119.32988 * 150.94567 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2488 1.6177 0.0000 4 1 2.4963 2.0465 -1.4000 5 1 1.4462 2.6526 0.7002 6 1 3.5464 1.4401 0.7001 7 6 2.0090 -1.2028 -0.0005 8 1 3.0607 -1.2191 -0.2456 9 7 1.3591 -2.3702 0.3103 10 6 0.1289 -2.3171 1.1019 11 6 -0.0054 -3.6121 1.9095 12 6 0.0556 -4.7991 0.9424 13 1 -0.8037 -4.7690 0.2725 14 6 0.0397 -6.0873 1.7243 15 6 1.2002 -6.5522 2.3140 16 6 1.1874 -7.7378 3.0248 17 6 0.0132 -8.4569 3.1483 18 6 -1.1475 -7.9914 2.5594 19 6 -1.1344 -6.8067 1.8474 20 7 1.2895 -4.7175 0.1591 21 6 1.8639 -3.5372 -0.1168 22 8 2.8829 -3.5246 -0.7800 23 1 -0.4850 0.8401 0.0004 24 1 0.1699 -1.4665 1.7822 25 1 -0.7280 -2.2105 0.4367 26 1 -0.9597 -3.6178 2.4363 27 1 0.8122 -3.6822 2.6270 28 1 2.1173 -5.9900 2.2182 29 1 2.0942 -8.1012 3.4853 30 1 0.0031 -9.3829 3.7041 31 1 -2.0648 -8.5536 2.6556 32 1 -2.0411 -6.4433 1.3869 33 1 1.7003 -5.5336 -0.1669 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261357353.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:54 Heat of formation + Delta-G solvation = 7.864642 kcal Electronic energy + Delta-G solvation = -17629.250346 eV Core-core repulsion = 14848.078419 eV Total energy + Delta-G solvation = -2781.171927 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.97190 -38.66264 -35.41407 -34.67714 -31.50035 -31.04685 -30.63508 -29.47199 -25.69513 -24.12193 -22.53121 -22.35845 -20.92437 -18.86715 -17.08010 -16.79302 -16.15825 -15.72806 -15.28367 -14.75732 -14.30977 -14.24174 -13.53228 -13.37524 -13.07336 -13.06464 -12.83814 -12.48979 -11.62572 -11.48607 -11.28436 -11.02418 -10.98137 -10.54419 -10.46402 -10.22110 -10.09510 -8.91678 -8.89210 -8.76946 -8.69542 -8.15206 -7.55712 -6.19180 -3.73254 1.35340 1.43142 3.25911 3.32323 3.37953 3.75530 4.04445 4.35024 4.42672 4.78826 4.93059 5.00189 5.13488 5.21315 5.25052 5.52585 5.54359 5.59905 5.69161 5.92684 6.01663 6.10355 6.12208 6.30860 6.47428 6.52898 6.69928 6.93728 7.03183 7.27399 7.36373 7.70736 8.01334 8.47640 8.77249 9.34728 9.65772 10.22639 10.88160 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.045496 B = 0.005742 C = 0.005429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.295044 B = 4875.446629 C = 5156.137979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.024 3.976 3 Si 0.925 3.075 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.289 4.289 8 H 0.097 0.903 9 N -0.465 5.465 10 C 0.147 3.853 11 C -0.149 4.149 12 C 0.187 3.813 13 H 0.071 0.929 14 C -0.086 4.086 15 C -0.103 4.103 16 C -0.122 4.122 17 C -0.126 4.126 18 C -0.123 4.123 19 C -0.110 4.110 20 N -0.746 5.746 21 C 0.664 3.336 22 O -0.629 6.629 23 H 0.264 0.736 24 H 0.080 0.920 25 H 0.066 0.934 26 H 0.080 0.920 27 H 0.067 0.933 28 H 0.125 0.875 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.945 -12.388 7.619 15.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.177 4.177 3 Si 0.752 3.248 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.417 4.417 8 H 0.115 0.885 9 N -0.189 5.189 10 C 0.023 3.977 11 C -0.188 4.188 12 C 0.081 3.919 13 H 0.089 0.911 14 C -0.087 4.087 15 C -0.121 4.121 16 C -0.140 4.140 17 C -0.144 4.144 18 C -0.141 4.141 19 C -0.129 4.129 20 N -0.406 5.406 21 C 0.367 3.633 22 O -0.512 6.512 23 H 0.074 0.926 24 H 0.099 0.901 25 H 0.084 0.916 26 H 0.099 0.901 27 H 0.085 0.915 28 H 0.143 0.857 29 H 0.138 0.862 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -4.650 -11.983 7.347 14.805 hybrid contribution 0.252 0.433 -0.018 0.501 sum -4.398 -11.550 7.329 14.369 Atomic orbital electron populations 1.70023 1.05700 1.27059 1.50633 1.25240 0.95501 0.99445 0.97545 0.85947 0.79249 0.81217 0.78351 1.20530 1.21035 1.19631 1.19527 0.94577 0.82245 1.45400 0.88507 1.42565 1.24368 1.03611 1.48385 1.21254 0.88563 0.93929 0.93976 1.22433 1.02591 0.95618 0.98182 1.19858 0.88788 0.91587 0.91682 0.91117 1.20190 0.93818 0.96274 0.98388 1.21109 0.98396 0.95990 0.96595 1.21153 0.98076 0.95360 0.99372 1.21123 0.93120 0.99902 1.00274 1.21086 0.98151 0.96501 0.98364 1.21034 0.97664 0.94857 0.99330 1.45071 1.27852 1.07790 1.59888 1.15621 0.84967 0.80736 0.82014 1.90759 1.27470 1.86033 1.46941 0.92593 0.90125 0.91570 0.90133 0.91462 0.85681 0.86234 0.86433 0.86231 0.85864 0.76540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.32 10.78 55.49 0.60 -23.72 16 2 C 0.02 0.65 5.00 -17.47 -0.09 0.56 16 3 Si 0.93 21.28 29.58 -169.99 -5.03 16.26 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.29 -8.31 9.17 -14.92 -0.14 -8.44 16 8 H 0.10 2.92 7.33 -52.49 -0.38 2.54 16 9 N -0.47 -12.29 2.96 -120.53 -0.36 -12.65 16 10 C 0.15 3.31 4.76 -3.99 -0.02 3.29 16 11 C -0.15 -2.61 5.46 -26.50 -0.14 -2.76 16 12 C 0.19 3.09 3.26 -69.03 -0.22 2.87 16 13 H 0.07 1.14 8.01 -51.93 -0.42 0.73 16 14 C -0.09 -1.20 4.87 -104.62 -0.51 -1.71 16 15 C -0.10 -1.40 9.15 -39.58 -0.36 -1.77 16 16 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 17 C -0.13 -1.32 10.05 -39.58 -0.40 -1.72 16 18 C -0.12 -1.30 10.05 -39.59 -0.40 -1.70 16 19 C -0.11 -1.32 9.67 -39.58 -0.38 -1.70 16 20 N -0.75 -14.84 4.65 -60.12 -0.28 -15.12 16 21 C 0.66 17.05 8.14 -88.07 -0.72 16.33 16 22 O -0.63 -18.51 16.61 5.29 0.09 -18.42 16 23 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 24 H 0.08 1.93 7.05 -51.93 -0.37 1.56 16 25 H 0.07 1.58 7.55 -51.93 -0.39 1.19 16 26 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 27 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 28 H 0.13 1.84 7.72 -52.49 -0.40 1.44 16 29 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.12 0.95 8.06 -52.48 -0.42 0.53 16 31 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 32 H 0.12 1.28 8.04 -52.49 -0.42 0.86 16 33 H 0.40 7.30 8.46 -40.82 -0.35 6.95 16 LS Contribution 278.45 15.07 4.20 4.20 Total: -1.00 -32.18 278.45 -8.54 -40.72 By element: Atomic # 1 Polarization: 11.25 SS G_CDS: -3.98 Total: 7.27 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: -3.78 Total: 1.45 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: -0.04 Total: -51.48 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: 0.09 Total: -18.42 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -32.18 -8.54 -40.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261357353.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.586 kcal (2) G-P(sol) polarization free energy of solvation -32.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds