Wall clock time and date at job start Mon Mar 30 2020 04:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31478 * 1 3 3 Si 1.86798 * 119.99988 * 2 1 4 4 H 1.48493 * 109.47719 * 270.00253 * 3 2 1 5 5 H 1.48504 * 109.46933 * 30.00687 * 3 2 1 6 6 H 1.48507 * 109.46811 * 149.99914 * 3 2 1 7 7 C 1.38875 * 119.99461 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99924 * 164.80947 * 7 2 1 9 9 N 1.37187 * 120.00421 * 344.80430 * 7 2 1 10 10 C 1.46380 * 119.32973 * 337.34247 * 9 7 2 11 11 C 1.53217 * 109.15044 * 209.10300 * 10 9 7 12 12 C 1.53237 * 108.57528 * 304.51579 * 11 10 9 13 13 H 1.09000 * 109.57750 * 295.53383 * 12 11 10 14 14 C 1.50699 * 109.52614 * 175.37120 * 12 11 10 15 15 C 1.38233 * 119.99793 * 280.04893 * 14 12 11 16 16 C 1.38237 * 120.00033 * 180.36765 * 15 14 12 17 17 C 1.38237 * 119.99817 * 359.86092 * 16 15 14 18 18 C 1.38234 * 119.99982 * 0.09396 * 17 16 15 19 19 C 1.38230 * 120.00321 * 359.97438 * 18 17 16 20 20 N 1.46376 * 109.15322 * 55.46548 * 12 11 10 21 21 C 1.34133 * 119.33243 * 157.36495 * 9 7 2 22 22 O 1.21586 * 118.69390 * 359.40898 * 21 9 7 23 23 H 0.97002 * 119.99810 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.52419 * 328.98514 * 10 9 7 25 25 H 1.08999 * 109.52199 * 89.11444 * 10 9 7 26 26 H 1.09005 * 109.62785 * 184.78124 * 11 10 9 27 27 H 1.09006 * 109.60561 * 64.23207 * 11 10 9 28 28 H 1.07998 * 120.00147 * 0.27528 * 15 14 12 29 29 H 1.08002 * 120.00069 * 179.97438 * 16 15 14 30 30 H 1.08008 * 119.99981 * 180.02562 * 17 16 15 31 31 H 1.08007 * 119.99662 * 179.97438 * 18 17 16 32 32 H 1.07996 * 120.00429 * 179.97438 * 19 18 17 33 33 H 0.97007 * 119.32988 * 150.94567 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2488 1.6177 0.0000 4 1 2.4963 2.0465 -1.4000 5 1 1.4462 2.6526 0.7002 6 1 3.5464 1.4401 0.7001 7 6 2.0090 -1.2028 -0.0005 8 1 3.0607 -1.2191 -0.2456 9 7 1.3591 -2.3702 0.3103 10 6 0.1289 -2.3171 1.1019 11 6 -0.0054 -3.6121 1.9095 12 6 0.0556 -4.7991 0.9424 13 1 -0.8037 -4.7690 0.2725 14 6 0.0397 -6.0873 1.7243 15 6 1.2002 -6.5522 2.3140 16 6 1.1874 -7.7378 3.0248 17 6 0.0132 -8.4569 3.1483 18 6 -1.1475 -7.9914 2.5594 19 6 -1.1344 -6.8067 1.8474 20 7 1.2895 -4.7175 0.1591 21 6 1.8639 -3.5372 -0.1168 22 8 2.8829 -3.5246 -0.7800 23 1 -0.4850 0.8401 0.0004 24 1 0.1699 -1.4665 1.7822 25 1 -0.7280 -2.2105 0.4367 26 1 -0.9597 -3.6178 2.4363 27 1 0.8122 -3.6822 2.6270 28 1 2.1173 -5.9900 2.2182 29 1 2.0942 -8.1012 3.4853 30 1 0.0031 -9.3829 3.7041 31 1 -2.0648 -8.5536 2.6556 32 1 -2.0411 -6.4433 1.3869 33 1 1.7003 -5.5336 -0.1669 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261357353.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:54 Heat of formation + Delta-G solvation = -12.587215 kcal Electronic energy + Delta-G solvation = -17630.137205 eV Core-core repulsion = 14848.078419 eV Total energy + Delta-G solvation = -2782.058786 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.55364 -39.93851 -37.22327 -36.48224 -33.44282 -32.36615 -31.68090 -31.02762 -27.39554 -25.93797 -23.96488 -23.45342 -22.11630 -20.68277 -18.75969 -18.18757 -17.96790 -17.33805 -16.53174 -16.47124 -15.79201 -15.66236 -15.28906 -14.89461 -14.49244 -14.27431 -14.13599 -13.65932 -13.39815 -13.22138 -12.87176 -12.55738 -12.28137 -12.16262 -12.03611 -11.87202 -11.81469 -10.96058 -10.77307 -10.07268 -9.78263 -9.70336 -9.47278 -8.27911 -5.90380 0.41797 0.53936 1.41757 1.42517 1.55861 2.19528 2.39150 2.54266 2.93133 3.15018 3.44010 3.63716 3.99604 4.04480 4.20775 4.26531 4.34695 4.44663 4.61892 4.67947 4.71153 4.87077 5.06798 5.15704 5.20496 5.43045 5.50078 5.58411 5.60296 5.65882 5.78885 6.14121 6.26372 6.40807 6.75687 7.25441 7.65794 8.20415 8.77508 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.045496 B = 0.005742 C = 0.005429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.295044 B = 4875.446629 C = 5156.137979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C -0.007 4.007 3 Si 0.991 3.009 4 H -0.278 1.278 5 H -0.267 1.267 6 H -0.272 1.272 7 C -0.331 4.331 8 H 0.069 0.931 9 N -0.479 5.479 10 C 0.153 3.847 11 C -0.136 4.136 12 C 0.189 3.811 13 H 0.080 0.920 14 C -0.099 4.099 15 C -0.120 4.120 16 C -0.127 4.127 17 C -0.120 4.120 18 C -0.120 4.120 19 C -0.111 4.111 20 N -0.731 5.731 21 C 0.656 3.344 22 O -0.678 6.678 23 H 0.271 0.729 24 H 0.062 0.938 25 H 0.051 0.949 26 H 0.117 0.883 27 H 0.061 0.939 28 H 0.103 0.897 29 H 0.136 0.864 30 H 0.148 0.852 31 H 0.151 0.849 32 H 0.140 0.860 33 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.695 -13.695 9.019 17.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.207 4.207 3 Si 0.814 3.186 4 H -0.203 1.203 5 H -0.191 1.191 6 H -0.196 1.196 7 C -0.459 4.459 8 H 0.087 0.913 9 N -0.203 5.203 10 C 0.029 3.971 11 C -0.175 4.175 12 C 0.084 3.916 13 H 0.098 0.902 14 C -0.100 4.100 15 C -0.139 4.139 16 C -0.145 4.145 17 C -0.138 4.138 18 C -0.137 4.137 19 C -0.130 4.130 20 N -0.390 5.390 21 C 0.358 3.642 22 O -0.566 6.566 23 H 0.081 0.919 24 H 0.080 0.920 25 H 0.069 0.931 26 H 0.135 0.865 27 H 0.079 0.921 28 H 0.121 0.879 29 H 0.153 0.847 30 H 0.165 0.835 31 H 0.168 0.832 32 H 0.158 0.842 33 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -6.456 -13.329 8.776 17.215 hybrid contribution 0.736 0.757 -0.436 1.142 sum -5.720 -12.573 8.340 16.135 Atomic orbital electron populations 1.70104 1.06570 1.28266 1.49532 1.26018 0.96460 1.02043 0.96198 0.84984 0.78126 0.77094 0.78375 1.20346 1.19103 1.19647 1.19491 0.94044 0.84168 1.48211 0.91343 1.42755 1.25253 1.03317 1.48976 1.21192 0.86377 0.96182 0.93301 1.22346 1.04280 0.93259 0.97598 1.19983 0.87086 0.92990 0.91521 0.90186 1.19886 0.95053 0.95574 0.99510 1.21046 0.97646 0.97132 0.98057 1.21375 0.99557 0.94610 0.98927 1.21524 0.92395 1.00481 0.99398 1.21470 0.99423 0.95844 0.97007 1.21248 0.97298 0.95115 0.99313 1.44880 1.28547 1.06099 1.59461 1.15903 0.84629 0.81957 0.81743 1.90697 1.29666 1.87112 1.49077 0.91941 0.92000 0.93102 0.86481 0.92056 0.87859 0.84658 0.83458 0.83173 0.84191 0.75694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.59 10.78 21.65 0.23 -49.36 16 2 C -0.01 -0.37 5.00 84.90 0.42 0.05 16 3 Si 0.99 44.04 29.58 68.60 2.03 46.07 16 4 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 5 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.33 -19.82 9.17 84.01 0.77 -19.05 16 8 H 0.07 4.39 7.33 -2.91 -0.02 4.37 16 9 N -0.48 -26.32 2.96 -653.86 -1.94 -28.26 16 10 C 0.15 7.03 4.76 86.47 0.41 7.44 16 11 C -0.14 -4.68 5.46 30.75 0.17 -4.52 16 12 C 0.19 6.11 3.26 44.35 0.14 6.25 16 13 H 0.08 2.47 8.01 -2.39 -0.02 2.45 16 14 C -0.10 -2.60 4.87 -19.87 -0.10 -2.70 16 15 C -0.12 -3.18 9.15 22.27 0.20 -2.97 16 16 C -0.13 -2.64 10.05 22.27 0.22 -2.42 16 17 C -0.12 -2.04 10.05 22.27 0.22 -1.82 16 18 C -0.12 -2.01 10.05 22.27 0.22 -1.79 16 19 C -0.11 -2.30 9.67 22.27 0.22 -2.08 16 20 N -0.73 -29.70 4.65 -462.74 -2.15 -31.85 16 21 C 0.66 35.08 8.14 179.46 1.46 36.54 16 22 O -0.68 -42.03 16.61 -3.99 -0.07 -42.09 16 23 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 24 H 0.06 3.03 7.05 -2.39 -0.02 3.01 16 25 H 0.05 2.47 7.55 -2.39 -0.02 2.45 16 26 H 0.12 3.17 8.14 -2.38 -0.02 3.15 16 27 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 28 H 0.10 3.12 7.72 -2.91 -0.02 3.10 16 29 H 0.14 2.30 8.06 -2.91 -0.02 2.28 16 30 H 0.15 1.64 8.06 -2.91 -0.02 1.61 16 31 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 32 H 0.14 2.37 8.04 -2.91 -0.02 2.35 16 33 H 0.41 15.21 8.46 -92.70 -0.78 14.43 16 Total: -1.00 -72.46 278.45 2.81 -69.65 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: 0.34 Total: 22.91 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: 4.37 Total: 12.94 kcal Atomic # 7 Polarization: -105.61 SS G_CDS: -3.86 Total: -109.47 kcal Atomic # 8 Polarization: -42.03 SS G_CDS: -0.07 Total: -42.09 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -72.46 2.81 -69.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261357353.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.059 kcal (2) G-P(sol) polarization free energy of solvation -72.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds