Wall clock time and date at job start Mon Mar 30 2020 04:24:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31478 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48504 * 109.47142 * 270.00081 * 3 2 1 5 5 H 1.48508 * 109.47097 * 29.99771 * 3 2 1 6 6 H 1.48497 * 109.47185 * 149.99988 * 3 2 1 7 7 C 1.38874 * 120.00226 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99819 * 191.19708 * 7 2 1 9 9 N 1.37197 * 119.99815 * 11.19865 * 7 2 1 10 10 C 1.46381 * 119.33000 * 24.12881 * 9 7 2 11 11 C 1.53238 * 109.15184 * 150.93920 * 10 9 7 12 12 C 1.53223 * 108.57116 * 55.47136 * 11 10 9 13 13 H 1.08998 * 109.56379 * 64.47507 * 12 11 10 14 14 C 1.50699 * 109.52675 * 184.63510 * 12 11 10 15 15 C 1.38234 * 120.00296 * 79.41544 * 14 12 11 16 16 C 1.38239 * 119.99679 * 179.76621 * 15 14 12 17 17 C 1.38234 * 120.00386 * 0.48566 * 16 15 14 18 18 C 1.38234 * 119.99701 * 359.79245 * 17 16 15 19 19 C 1.38235 * 120.00141 * 359.95010 * 18 17 16 20 20 N 1.46387 * 109.16584 * 304.54136 * 12 11 10 21 21 C 1.34131 * 119.32594 * 204.15184 * 9 7 2 22 22 O 1.21586 * 118.70248 * 0.56727 * 21 9 7 23 23 H 0.97004 * 119.99911 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.52555 * 270.84429 * 10 9 7 25 25 H 1.08999 * 109.52641 * 31.03771 * 10 9 7 26 26 H 1.08998 * 109.62151 * 175.20180 * 11 10 9 27 27 H 1.09000 * 109.62239 * 295.75596 * 11 10 9 28 28 H 1.07994 * 120.00162 * 359.97438 * 15 14 12 29 29 H 1.08005 * 119.99838 * 180.25152 * 16 15 14 30 30 H 1.07997 * 120.00398 * 179.76806 * 17 16 15 31 31 H 1.08004 * 119.99928 * 179.97438 * 18 17 16 32 32 H 1.07998 * 120.00350 * 179.97438 * 19 18 17 33 33 H 0.96993 * 119.32814 * 209.07097 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2487 1.6178 0.0000 4 1 2.4962 2.0465 -1.4001 5 1 1.4461 2.6527 0.7000 6 1 3.5463 1.4403 0.7000 7 6 2.0092 -1.2027 0.0005 8 1 3.0738 -1.2114 0.1822 9 7 1.3428 -2.3796 -0.2297 10 6 0.0833 -2.3565 -0.9751 11 6 -0.0881 -3.6879 -1.7142 12 6 0.0052 -4.8276 -0.6944 13 1 -0.8275 -4.7600 0.0057 14 6 -0.0466 -6.1515 -1.4125 15 6 1.0853 -6.6461 -2.0330 16 6 1.0390 -7.8628 -2.6875 17 6 -0.1419 -8.5802 -2.7301 18 6 -1.2753 -8.0829 -2.1146 19 6 -1.2276 -6.8687 -1.4555 20 7 1.2688 -4.7166 0.0362 21 6 1.8586 -3.5280 0.2333 22 8 2.9022 -3.4903 0.8559 23 1 -0.4850 0.8401 -0.0004 24 1 -0.7469 -2.2144 -0.2833 25 1 0.1016 -1.5393 -1.6962 26 1 -1.0621 -3.7126 -2.2028 27 1 0.7007 -3.7975 -2.4585 28 1 2.0067 -6.0835 -2.0035 29 1 1.9244 -8.2512 -3.1688 30 1 -0.1791 -9.5290 -3.2447 31 1 -2.1980 -8.6432 -2.1482 32 1 -2.1132 -6.4800 -0.9749 33 1 1.6883 -5.5187 0.3846 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261357354.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:57 Heat of formation + Delta-G solvation = 7.737536 kcal Electronic energy + Delta-G solvation = -17629.830577 eV Core-core repulsion = 14848.653138 eV Total energy + Delta-G solvation = -2781.177438 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.96752 -38.65998 -35.41019 -34.67416 -31.49045 -31.04230 -30.63520 -29.46433 -25.69527 -24.10935 -22.52996 -22.35383 -20.92211 -18.86612 -17.07678 -16.78812 -16.15403 -15.73089 -15.28100 -14.75901 -14.30270 -14.24078 -13.52192 -13.37324 -13.07410 -13.05582 -12.83227 -12.48451 -11.60700 -11.48460 -11.26001 -11.04179 -10.99368 -10.51656 -10.44248 -10.21688 -10.10970 -8.91831 -8.89057 -8.76065 -8.69120 -8.15000 -7.55315 -6.17857 -3.75083 1.35554 1.43317 3.25871 3.32306 3.38204 3.75718 4.04618 4.35498 4.43130 4.79270 4.93217 5.00381 5.14069 5.21941 5.25383 5.53041 5.54719 5.60527 5.69622 5.93305 6.02135 6.11136 6.13157 6.31733 6.47639 6.53060 6.70306 6.96137 7.03772 7.29791 7.37811 7.70323 8.01803 8.47828 8.77735 9.34986 9.65729 10.22734 10.88967 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.046139 B = 0.005731 C = 0.005411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.710725 B = 4884.622114 C = 5173.711426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.024 3.976 3 Si 0.927 3.073 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.287 4.287 8 H 0.097 0.903 9 N -0.466 5.466 10 C 0.148 3.852 11 C -0.150 4.150 12 C 0.187 3.813 13 H 0.071 0.929 14 C -0.086 4.086 15 C -0.102 4.102 16 C -0.122 4.122 17 C -0.126 4.126 18 C -0.123 4.123 19 C -0.110 4.110 20 N -0.746 5.746 21 C 0.665 3.335 22 O -0.629 6.629 23 H 0.264 0.736 24 H 0.066 0.934 25 H 0.082 0.918 26 H 0.080 0.920 27 H 0.066 0.934 28 H 0.125 0.875 29 H 0.120 0.880 30 H 0.118 0.882 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.253 -12.663 -6.707 15.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.177 4.177 3 Si 0.755 3.245 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.416 4.416 8 H 0.114 0.886 9 N -0.190 5.190 10 C 0.024 3.976 11 C -0.189 4.189 12 C 0.081 3.919 13 H 0.089 0.911 14 C -0.087 4.087 15 C -0.121 4.121 16 C -0.140 4.140 17 C -0.144 4.144 18 C -0.141 4.141 19 C -0.129 4.129 20 N -0.406 5.406 21 C 0.367 3.633 22 O -0.512 6.512 23 H 0.074 0.926 24 H 0.084 0.916 25 H 0.100 0.900 26 H 0.098 0.902 27 H 0.085 0.915 28 H 0.143 0.857 29 H 0.138 0.862 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -4.944 -12.247 -6.454 14.700 hybrid contribution 0.254 0.427 0.014 0.497 sum -4.690 -11.820 -6.440 14.254 Atomic orbital electron populations 1.69996 1.05657 1.27014 1.51046 1.25277 0.95589 0.99442 0.97432 0.85903 0.79348 0.81171 0.78120 1.20624 1.21129 1.19527 1.19549 0.93402 0.81782 1.46847 0.88552 1.42559 1.22185 1.04281 1.50003 1.21276 0.87768 0.93270 0.95289 1.22448 1.02507 0.96022 0.97924 1.19861 0.88148 0.91254 0.92654 0.91129 1.20193 0.93927 0.96159 0.98390 1.21108 0.98604 0.95740 0.96623 1.21152 0.97958 0.95175 0.99683 1.21120 0.93251 0.99881 1.00167 1.21087 0.98336 0.96202 0.98480 1.21037 0.97511 0.94754 0.99584 1.45072 1.25126 1.08278 1.62119 1.15635 0.85015 0.80770 0.81865 1.90761 1.25742 1.85794 1.48884 0.92588 0.91590 0.89984 0.90154 0.91502 0.85693 0.86239 0.86436 0.86232 0.85866 0.76549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.37 10.64 55.49 0.59 -23.78 16 2 C 0.02 0.64 5.08 -17.47 -0.09 0.55 16 3 Si 0.93 21.34 29.57 -169.99 -5.03 16.32 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.29 -8.25 9.16 -14.92 -0.14 -8.39 16 8 H 0.10 2.90 7.34 -52.49 -0.39 2.52 16 9 N -0.47 -12.32 2.96 -120.51 -0.36 -12.67 16 10 C 0.15 3.35 4.75 -3.98 -0.02 3.33 16 11 C -0.15 -2.63 5.46 -26.49 -0.14 -2.78 16 12 C 0.19 3.10 3.25 -69.03 -0.22 2.87 16 13 H 0.07 1.14 8.01 -51.93 -0.42 0.73 16 14 C -0.09 -1.20 4.87 -104.62 -0.51 -1.71 16 15 C -0.10 -1.40 9.16 -39.58 -0.36 -1.77 16 16 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 17 C -0.13 -1.33 10.05 -39.58 -0.40 -1.72 16 18 C -0.12 -1.31 10.05 -39.58 -0.40 -1.70 16 19 C -0.11 -1.32 9.67 -39.58 -0.38 -1.71 16 20 N -0.75 -14.85 4.67 -60.12 -0.28 -15.13 16 21 C 0.66 17.06 8.14 -88.06 -0.72 16.35 16 22 O -0.63 -18.51 16.63 5.29 0.09 -18.42 16 23 H 0.26 6.82 8.31 -40.82 -0.34 6.49 16 24 H 0.07 1.58 7.53 -51.93 -0.39 1.19 16 25 H 0.08 1.97 7.04 -51.93 -0.37 1.61 16 26 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 27 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.13 1.84 7.73 -52.49 -0.41 1.44 16 29 H 0.12 1.16 8.06 -52.48 -0.42 0.73 16 30 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 31 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 32 H 0.12 1.28 8.04 -52.49 -0.42 0.86 16 33 H 0.40 7.30 8.47 -40.82 -0.35 6.96 16 LS Contribution 278.39 15.07 4.20 4.20 Total: -1.00 -32.14 278.39 -8.55 -40.68 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -3.98 Total: 7.29 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -3.78 Total: 1.52 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: -0.05 Total: -51.59 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: 0.09 Total: -18.42 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -32.14 -8.55 -40.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261357354.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.420 kcal (2) G-P(sol) polarization free energy of solvation -32.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds