Wall clock time and date at job start Mon Mar 30 2020 04:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31478 * 1 3 3 Si 1.86800 * 119.99853 * 2 1 4 4 H 1.48504 * 109.47142 * 270.00081 * 3 2 1 5 5 H 1.48508 * 109.47097 * 29.99771 * 3 2 1 6 6 H 1.48497 * 109.47185 * 149.99988 * 3 2 1 7 7 C 1.38874 * 120.00226 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99819 * 191.19708 * 7 2 1 9 9 N 1.37197 * 119.99815 * 11.19865 * 7 2 1 10 10 C 1.46381 * 119.33000 * 24.12881 * 9 7 2 11 11 C 1.53238 * 109.15184 * 150.93920 * 10 9 7 12 12 C 1.53223 * 108.57116 * 55.47136 * 11 10 9 13 13 H 1.08998 * 109.56379 * 64.47507 * 12 11 10 14 14 C 1.50699 * 109.52675 * 184.63510 * 12 11 10 15 15 C 1.38234 * 120.00296 * 79.41544 * 14 12 11 16 16 C 1.38239 * 119.99679 * 179.76621 * 15 14 12 17 17 C 1.38234 * 120.00386 * 0.48566 * 16 15 14 18 18 C 1.38234 * 119.99701 * 359.79245 * 17 16 15 19 19 C 1.38235 * 120.00141 * 359.95010 * 18 17 16 20 20 N 1.46387 * 109.16584 * 304.54136 * 12 11 10 21 21 C 1.34131 * 119.32594 * 204.15184 * 9 7 2 22 22 O 1.21586 * 118.70248 * 0.56727 * 21 9 7 23 23 H 0.97004 * 119.99911 * 0.02562 * 1 2 3 24 24 H 1.08996 * 109.52555 * 270.84429 * 10 9 7 25 25 H 1.08999 * 109.52641 * 31.03771 * 10 9 7 26 26 H 1.08998 * 109.62151 * 175.20180 * 11 10 9 27 27 H 1.09000 * 109.62239 * 295.75596 * 11 10 9 28 28 H 1.07994 * 120.00162 * 359.97438 * 15 14 12 29 29 H 1.08005 * 119.99838 * 180.25152 * 16 15 14 30 30 H 1.07997 * 120.00398 * 179.76806 * 17 16 15 31 31 H 1.08004 * 119.99928 * 179.97438 * 18 17 16 32 32 H 1.07998 * 120.00350 * 179.97438 * 19 18 17 33 33 H 0.96993 * 119.32814 * 209.07097 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3148 0.0000 0.0000 3 14 2.2487 1.6178 0.0000 4 1 2.4962 2.0465 -1.4001 5 1 1.4461 2.6527 0.7000 6 1 3.5463 1.4403 0.7000 7 6 2.0092 -1.2027 0.0005 8 1 3.0738 -1.2114 0.1822 9 7 1.3428 -2.3796 -0.2297 10 6 0.0833 -2.3565 -0.9751 11 6 -0.0881 -3.6879 -1.7142 12 6 0.0052 -4.8276 -0.6944 13 1 -0.8275 -4.7600 0.0057 14 6 -0.0466 -6.1515 -1.4125 15 6 1.0853 -6.6461 -2.0330 16 6 1.0390 -7.8628 -2.6875 17 6 -0.1419 -8.5802 -2.7301 18 6 -1.2753 -8.0829 -2.1146 19 6 -1.2276 -6.8687 -1.4555 20 7 1.2688 -4.7166 0.0362 21 6 1.8586 -3.5280 0.2333 22 8 2.9022 -3.4903 0.8559 23 1 -0.4850 0.8401 -0.0004 24 1 -0.7469 -2.2144 -0.2833 25 1 0.1016 -1.5393 -1.6962 26 1 -1.0621 -3.7126 -2.2028 27 1 0.7007 -3.7975 -2.4585 28 1 2.0067 -6.0835 -2.0035 29 1 1.9244 -8.2512 -3.1688 30 1 -0.1791 -9.5290 -3.2447 31 1 -2.1980 -8.6432 -2.1482 32 1 -2.1132 -6.4800 -0.9749 33 1 1.6883 -5.5187 0.3846 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261357354.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:24:56 Heat of formation + Delta-G solvation = -12.664464 kcal Electronic energy + Delta-G solvation = -17630.715274 eV Core-core repulsion = 14848.653138 eV Total energy + Delta-G solvation = -2782.062135 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.55130 -39.93824 -37.22097 -36.48194 -33.43230 -32.36546 -31.68192 -31.02344 -27.39890 -25.92469 -23.96590 -23.45363 -22.11544 -20.68401 -18.75779 -18.18514 -17.96655 -17.34397 -16.53320 -16.46665 -15.79222 -15.65932 -15.28291 -14.89126 -14.48944 -14.27282 -14.13488 -13.65350 -13.37799 -13.22431 -12.86768 -12.54960 -12.26262 -12.18323 -12.04975 -11.87278 -11.81098 -10.95910 -10.76345 -10.07225 -9.78219 -9.69945 -9.47314 -8.26558 -5.92207 0.41805 0.53930 1.42006 1.42633 1.55314 2.19546 2.39766 2.54225 2.93239 3.15396 3.44433 3.63946 3.99670 4.05276 4.20791 4.26797 4.34742 4.45303 4.62191 4.68172 4.71408 4.87571 5.07385 5.17130 5.20531 5.44169 5.50217 5.58672 5.60529 5.65864 5.79153 6.14131 6.26639 6.40881 6.75940 7.25598 7.65767 8.20385 8.78114 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.046139 B = 0.005731 C = 0.005411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.710725 B = 4884.622114 C = 5173.711426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C -0.008 4.008 3 Si 0.992 3.008 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.278 1.278 7 C -0.328 4.328 8 H 0.068 0.932 9 N -0.480 5.480 10 C 0.154 3.846 11 C -0.137 4.137 12 C 0.189 3.811 13 H 0.080 0.920 14 C -0.100 4.100 15 C -0.120 4.120 16 C -0.127 4.127 17 C -0.120 4.120 18 C -0.120 4.120 19 C -0.111 4.111 20 N -0.731 5.731 21 C 0.656 3.344 22 O -0.678 6.678 23 H 0.271 0.729 24 H 0.051 0.949 25 H 0.062 0.938 26 H 0.116 0.884 27 H 0.060 0.940 28 H 0.103 0.897 29 H 0.136 0.864 30 H 0.148 0.852 31 H 0.151 0.849 32 H 0.140 0.860 33 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.066 -14.030 -7.942 17.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.208 4.208 3 Si 0.816 3.184 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.203 1.203 7 C -0.457 4.457 8 H 0.086 0.914 9 N -0.204 5.204 10 C 0.031 3.969 11 C -0.176 4.176 12 C 0.084 3.916 13 H 0.098 0.902 14 C -0.100 4.100 15 C -0.139 4.139 16 C -0.145 4.145 17 C -0.138 4.138 18 C -0.137 4.137 19 C -0.130 4.130 20 N -0.390 5.390 21 C 0.358 3.642 22 O -0.565 6.565 23 H 0.080 0.920 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.135 0.865 27 H 0.079 0.921 28 H 0.121 0.879 29 H 0.153 0.847 30 H 0.165 0.835 31 H 0.168 0.832 32 H 0.158 0.842 33 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -6.815 -13.654 -7.719 17.102 hybrid contribution 0.757 0.770 0.381 1.144 sum -6.058 -12.885 -7.339 16.018 Atomic orbital electron populations 1.70087 1.06498 1.28189 1.49920 1.26049 0.96561 1.02056 0.96106 0.84947 0.77738 0.76956 0.78739 1.19076 1.19833 1.20288 1.19506 0.92810 0.83678 1.49704 0.91383 1.42748 1.23095 1.03982 1.50568 1.21201 0.85585 0.95711 0.94408 1.22357 1.04247 0.93443 0.97506 1.19983 0.86339 0.92794 0.92457 0.90198 1.19888 0.95212 0.95260 0.99668 1.21045 0.97873 0.96885 0.98064 1.21375 0.99405 0.94399 0.99294 1.21521 0.92483 1.00599 0.99189 1.21471 0.99601 0.95558 0.97116 1.21250 0.97085 0.95101 0.99544 1.44881 1.25933 1.06550 1.61616 1.15912 0.84676 0.82011 0.81570 1.90699 1.27947 1.86899 1.50980 0.91969 0.93117 0.91927 0.86533 0.92101 0.87867 0.84656 0.83456 0.83172 0.84198 0.75696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.67 10.64 21.65 0.23 -49.44 16 2 C -0.01 -0.41 5.08 84.90 0.43 0.02 16 3 Si 0.99 44.17 29.57 68.60 2.03 46.20 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 5 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 6 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 7 C -0.33 -19.68 9.16 84.01 0.77 -18.91 16 8 H 0.07 4.36 7.34 -2.91 -0.02 4.34 16 9 N -0.48 -26.38 2.96 -653.81 -1.94 -28.32 16 10 C 0.15 7.12 4.75 86.48 0.41 7.53 16 11 C -0.14 -4.72 5.46 30.75 0.17 -4.56 16 12 C 0.19 6.12 3.25 44.34 0.14 6.26 16 13 H 0.08 2.47 8.01 -2.39 -0.02 2.45 16 14 C -0.10 -2.61 4.87 -19.87 -0.10 -2.70 16 15 C -0.12 -3.18 9.16 22.27 0.20 -2.97 16 16 C -0.13 -2.65 10.05 22.27 0.22 -2.42 16 17 C -0.12 -2.04 10.05 22.27 0.22 -1.82 16 18 C -0.12 -2.02 10.05 22.27 0.22 -1.80 16 19 C -0.11 -2.30 9.67 22.27 0.22 -2.09 16 20 N -0.73 -29.71 4.67 -462.74 -2.16 -31.87 16 21 C 0.66 35.12 8.14 179.45 1.46 36.58 16 22 O -0.68 -42.02 16.63 -3.99 -0.07 -42.08 16 23 H 0.27 13.86 8.31 -92.71 -0.77 13.09 16 24 H 0.05 2.46 7.53 -2.39 -0.02 2.45 16 25 H 0.06 3.08 7.04 -2.39 -0.02 3.06 16 26 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 27 H 0.06 2.18 8.14 -2.39 -0.02 2.17 16 28 H 0.10 3.12 7.73 -2.91 -0.02 3.10 16 29 H 0.14 2.31 8.06 -2.91 -0.02 2.28 16 30 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 31 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 32 H 0.14 2.38 8.04 -2.91 -0.02 2.35 16 33 H 0.41 15.22 8.47 -92.71 -0.79 14.43 16 Total: -1.00 -72.35 278.39 2.81 -69.54 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 0.33 Total: 22.85 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: 4.38 Total: 13.12 kcal Atomic # 7 Polarization: -105.76 SS G_CDS: -3.87 Total: -109.63 kcal Atomic # 8 Polarization: -42.02 SS G_CDS: -0.07 Total: -42.08 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -72.35 2.81 -69.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261357354.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.880 kcal (2) G-P(sol) polarization free energy of solvation -72.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds