Wall clock time and date at job start Mon Mar 30 2020 04:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99685 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99983 * 359.97438 * 7 2 1 10 10 N 1.46892 * 109.47376 * 180.02562 * 9 7 2 11 11 N 1.36343 * 110.99986 * 294.94108 * 10 9 7 12 12 C 1.34588 * 112.94613 * 256.73790 * 11 10 9 13 13 O 1.21287 * 126.03465 * 178.40725 * 12 11 10 14 14 C 1.51808 * 107.92394 * 358.40281 * 12 11 10 15 15 C 1.48141 * 111.00467 * 175.00412 * 10 9 7 16 16 H 1.08999 * 110.94346 * 337.29473 * 15 10 9 17 17 C 1.50696 * 110.95030 * 213.62354 * 15 10 9 18 18 C 1.38233 * 120.00000 * 319.72506 * 17 15 10 19 19 C 1.38235 * 120.00245 * 179.76722 * 18 17 15 20 20 C 1.38241 * 119.99684 * 0.50296 * 19 18 17 21 21 C 1.38230 * 119.99843 * 359.75090 * 20 19 18 22 22 C 1.38234 * 120.00106 * 139.99207 * 17 15 10 23 23 H 0.97000 * 119.99462 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47577 * 300.00554 * 9 7 2 25 25 H 1.09010 * 109.46864 * 60.00292 * 9 7 2 26 26 H 0.97005 * 123.52515 * 76.74115 * 11 10 9 27 27 H 1.08995 * 110.85233 * 226.98860 * 14 12 11 28 28 H 1.09003 * 110.84511 * 103.36348 * 14 12 11 29 29 H 1.08002 * 119.99843 * 359.97438 * 18 17 15 30 30 H 1.08004 * 120.00149 * 180.22946 * 19 18 17 31 31 H 1.08003 * 119.99834 * 179.72466 * 20 19 18 32 32 H 1.07998 * 120.00196 * 179.97438 * 21 20 19 33 33 H 1.08001 * 119.99915 * 0.02562 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2057 -3.6156 -0.0005 11 7 2.9312 -3.6382 -1.1547 12 6 2.5188 -4.5874 -2.0152 13 8 2.9765 -4.7977 -3.1185 14 6 1.3797 -5.3482 -1.3608 15 6 1.5036 -4.9145 0.1199 16 1 0.5204 -4.7854 0.5723 17 6 2.3288 -5.9025 0.9035 18 6 3.6959 -5.9685 0.7098 19 6 4.4535 -6.8714 1.4320 20 6 3.8426 -7.7155 2.3404 21 6 2.4748 -7.6532 2.5302 22 6 1.7179 -6.7466 1.8119 23 1 -0.4849 -0.8401 -0.0004 24 1 0.6247 -2.5571 0.8896 25 1 0.6242 -2.5567 -0.8904 26 1 3.6675 -3.0335 -1.3366 27 1 1.5223 -6.4239 -1.4633 28 1 0.4196 -5.0417 -1.7759 29 1 4.1725 -5.3122 -0.0034 30 1 5.5222 -6.9204 1.2834 31 1 4.4339 -8.4241 2.9015 32 1 1.9974 -8.3129 3.2396 33 1 0.6491 -6.6983 1.9597 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261360007.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:11 Heat of formation + Delta-G solvation = 25.551867 kcal Electronic energy + Delta-G solvation = -17586.835830 eV Core-core repulsion = 14806.430879 eV Total energy + Delta-G solvation = -2780.404951 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.88452 -38.68850 -36.88250 -33.48734 -32.51894 -30.76822 -30.01596 -29.43196 -26.04439 -23.70073 -22.66323 -22.05509 -20.80276 -20.36305 -17.46967 -17.09934 -16.47288 -15.52317 -15.33670 -14.76393 -14.57100 -14.18117 -13.84772 -13.58821 -13.26425 -13.19293 -12.85524 -12.42126 -12.32859 -11.98009 -11.58577 -11.08386 -10.95010 -10.81707 -10.78265 -10.18880 -9.90673 -9.45310 -8.85022 -8.79811 -8.53922 -8.51858 -7.61644 -6.54066 -4.25539 1.42158 1.52777 2.88267 3.37326 3.39828 3.48174 3.56158 3.89347 4.39139 4.55231 4.63395 4.86618 4.96453 5.07559 5.10989 5.22899 5.23932 5.39310 5.61314 5.70696 5.78001 5.96372 6.06560 6.17336 6.48247 6.56304 6.62166 6.75873 6.83011 7.04475 7.11149 7.46278 7.86789 8.20677 8.30488 8.66058 8.78036 9.44978 10.85469 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.025430 B = 0.006491 C = 0.005978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.778132 B = 4312.539688 C = 4683.083118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.019 3.981 3 Si 1.076 2.924 4 H -0.286 1.286 5 H -0.288 1.288 6 H -0.284 1.284 7 C -0.594 4.594 8 H 0.058 0.942 9 C 0.152 3.848 10 N -0.277 5.277 11 N -0.548 5.548 12 C 0.499 3.501 13 O -0.545 6.545 14 C -0.178 4.178 15 C 0.092 3.908 16 H 0.106 0.894 17 C -0.061 4.061 18 C -0.090 4.090 19 C -0.124 4.124 20 C -0.125 4.125 21 C -0.125 4.125 22 C -0.111 4.111 23 H 0.267 0.733 24 H 0.038 0.962 25 H -0.006 1.006 26 H 0.429 0.571 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.125 0.875 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.119 0.881 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.801 -13.379 4.058 14.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.186 4.186 3 Si 0.904 3.096 4 H -0.213 1.213 5 H -0.214 1.214 6 H -0.210 1.210 7 C -0.633 4.633 8 H 0.077 0.923 9 C 0.026 3.974 10 N -0.095 5.095 11 N -0.294 5.294 12 C 0.283 3.717 13 O -0.422 6.422 14 C -0.219 4.219 15 C -0.017 4.017 16 H 0.124 0.876 17 C -0.062 4.062 18 C -0.109 4.109 19 C -0.142 4.142 20 C -0.143 4.143 21 C -0.143 4.143 22 C -0.130 4.130 23 H 0.077 0.923 24 H 0.055 0.945 25 H 0.011 0.989 26 H 0.273 0.727 27 H 0.124 0.876 28 H 0.124 0.876 29 H 0.143 0.857 30 H 0.137 0.863 31 H 0.135 0.865 32 H 0.137 0.863 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 4.101 -11.805 3.898 13.090 hybrid contribution -0.279 -1.403 -0.525 1.524 sum 3.821 -13.207 3.372 14.157 Atomic orbital electron populations 1.70795 1.06900 1.30449 1.46183 1.25877 0.96413 1.02818 0.93457 0.83423 0.74590 0.74679 0.76895 1.21255 1.21361 1.20976 1.21830 0.94789 0.90510 1.56133 0.92332 1.20646 0.91096 0.89416 0.96194 1.65035 1.25019 1.02538 1.16867 1.45941 1.33159 1.35919 1.14375 1.21402 0.83780 0.82155 0.84377 1.90709 1.61854 1.70845 1.18788 1.22965 0.99944 1.02772 0.96230 1.21865 0.97114 0.89144 0.93533 0.87610 1.19531 0.94094 0.95771 0.96825 1.21121 0.93467 0.97249 0.99029 1.21145 0.99748 0.96335 0.96962 1.21104 0.94924 0.99475 0.98770 1.21032 0.94122 0.99169 0.99952 1.20971 0.99871 0.95985 0.96124 0.92281 0.94459 0.98851 0.72686 0.87553 0.87590 0.85736 0.86318 0.86470 0.86265 0.86057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.45 13.65 55.43 0.76 -25.70 16 2 C 0.02 0.52 5.46 -17.82 -0.10 0.42 16 3 Si 1.08 24.49 29.90 -169.99 -5.08 19.41 16 4 H -0.29 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.59 -15.80 8.90 -34.44 -0.31 -16.11 16 8 H 0.06 1.54 7.63 -52.49 -0.40 1.14 16 9 C 0.15 3.60 4.03 -4.98 -0.02 3.58 16 10 N -0.28 -5.46 4.87 -107.34 -0.52 -5.99 16 11 N -0.55 -10.58 4.33 31.48 0.14 -10.44 16 12 C 0.50 9.55 7.96 -10.52 -0.08 9.46 16 13 O -0.55 -11.95 18.03 5.55 0.10 -11.85 16 14 C -0.18 -2.78 6.55 -26.39 -0.17 -2.96 16 15 C 0.09 1.48 3.07 -67.24 -0.21 1.28 16 16 H 0.11 1.59 7.59 -51.93 -0.39 1.20 16 17 C -0.06 -0.91 4.98 -104.63 -0.52 -1.43 16 18 C -0.09 -1.36 9.05 -39.58 -0.36 -1.71 16 19 C -0.12 -1.59 10.05 -39.58 -0.40 -1.99 16 20 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 21 C -0.12 -1.42 10.05 -39.58 -0.40 -1.82 16 22 C -0.11 -1.41 9.69 -39.58 -0.38 -1.79 16 23 H 0.27 7.68 7.22 -40.82 -0.29 7.38 16 24 H 0.04 0.92 7.86 -51.93 -0.41 0.51 16 25 H -0.01 -0.16 8.01 -51.92 -0.42 -0.57 16 26 H 0.43 8.17 8.73 -185.33 -1.62 6.55 16 27 H 0.11 1.47 7.91 -51.93 -0.41 1.06 16 28 H 0.11 1.57 8.14 -51.93 -0.42 1.15 16 29 H 0.12 2.00 6.28 -52.49 -0.33 1.67 16 30 H 0.12 1.29 8.06 -52.48 -0.42 0.87 16 31 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 32 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 33 H 0.12 1.30 8.04 -52.49 -0.42 0.88 16 LS Contribution 283.51 15.07 4.27 4.27 Total: -1.00 -31.06 283.51 -8.86 -39.92 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -5.18 Total: 5.27 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: -3.34 Total: -14.90 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: 0.37 Total: -42.13 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.10 Total: -11.85 kcal Atomic # 14 Polarization: 24.49 SS G_CDS: -5.08 Total: 19.41 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.06 -8.86 -39.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261360007.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.475 kcal (2) G-P(sol) polarization free energy of solvation -31.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds