Wall clock time and date at job start Mon Mar 30 2020 04:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99771 * 2 1 4 4 H 1.48503 * 109.46845 * 90.00345 * 3 2 1 5 5 H 1.48503 * 109.47399 * 209.99834 * 3 2 1 6 6 H 1.48498 * 109.47295 * 330.00441 * 3 2 1 7 7 C 1.37880 * 120.00210 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99685 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99983 * 359.97438 * 7 2 1 10 10 N 1.46892 * 109.47376 * 180.02562 * 9 7 2 11 11 N 1.36343 * 110.99986 * 294.94108 * 10 9 7 12 12 C 1.34588 * 112.94613 * 256.73790 * 11 10 9 13 13 O 1.21287 * 126.03465 * 178.40725 * 12 11 10 14 14 C 1.51808 * 107.92394 * 358.40281 * 12 11 10 15 15 C 1.48141 * 111.00467 * 175.00412 * 10 9 7 16 16 H 1.08999 * 110.94346 * 337.29473 * 15 10 9 17 17 C 1.50696 * 110.95030 * 213.62354 * 15 10 9 18 18 C 1.38233 * 120.00000 * 319.72506 * 17 15 10 19 19 C 1.38235 * 120.00245 * 179.76722 * 18 17 15 20 20 C 1.38241 * 119.99684 * 0.50296 * 19 18 17 21 21 C 1.38230 * 119.99843 * 359.75090 * 20 19 18 22 22 C 1.38234 * 120.00106 * 139.99207 * 17 15 10 23 23 H 0.97000 * 119.99462 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47577 * 300.00554 * 9 7 2 25 25 H 1.09010 * 109.46864 * 60.00292 * 9 7 2 26 26 H 0.97005 * 123.52515 * 76.74115 * 11 10 9 27 27 H 1.08995 * 110.85233 * 226.98860 * 14 12 11 28 28 H 1.09003 * 110.84511 * 103.36348 * 14 12 11 29 29 H 1.08002 * 119.99843 * 359.97438 * 18 17 15 30 30 H 1.08004 * 120.00149 * 180.22946 * 19 18 17 31 31 H 1.08003 * 119.99834 * 179.72466 * 20 19 18 32 32 H 1.07998 * 120.00196 * 179.97438 * 21 20 19 33 33 H 1.08001 * 119.99915 * 0.02562 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5467 1.4403 -0.7000 6 1 1.4465 2.6527 -0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2057 -3.6156 -0.0005 11 7 2.9312 -3.6382 -1.1547 12 6 2.5188 -4.5874 -2.0152 13 8 2.9765 -4.7977 -3.1185 14 6 1.3797 -5.3482 -1.3608 15 6 1.5036 -4.9145 0.1199 16 1 0.5204 -4.7854 0.5723 17 6 2.3288 -5.9025 0.9035 18 6 3.6959 -5.9685 0.7098 19 6 4.4535 -6.8714 1.4320 20 6 3.8426 -7.7155 2.3404 21 6 2.4748 -7.6532 2.5302 22 6 1.7179 -6.7466 1.8119 23 1 -0.4849 -0.8401 -0.0004 24 1 0.6247 -2.5571 0.8896 25 1 0.6242 -2.5567 -0.8904 26 1 3.6675 -3.0335 -1.3366 27 1 1.5223 -6.4239 -1.4633 28 1 0.4196 -5.0417 -1.7759 29 1 4.1725 -5.3122 -0.0034 30 1 5.5222 -6.9204 1.2834 31 1 4.4339 -8.4241 2.9015 32 1 1.9974 -8.3129 3.2396 33 1 0.6491 -6.6983 1.9597 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261360007.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:25:11 Heat of formation + Delta-G solvation = 5.833970 kcal Electronic energy + Delta-G solvation = -17587.690862 eV Core-core repulsion = 14806.430879 eV Total energy + Delta-G solvation = -2781.259983 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.34553 -39.77488 -38.48143 -35.47093 -33.81952 -31.85491 -31.64905 -30.60091 -27.86737 -25.18680 -24.13473 -23.28471 -22.19407 -21.66185 -19.24801 -18.62503 -17.88026 -16.87823 -16.64628 -16.11616 -15.86847 -15.66474 -15.51217 -15.23219 -14.62403 -14.24608 -14.19565 -13.90880 -13.88980 -13.19539 -13.12254 -12.86963 -12.57023 -11.98409 -11.95301 -11.90648 -11.47245 -11.10058 -10.73170 -10.58253 -9.77213 -9.62406 -9.23974 -8.71816 -6.43750 0.42090 0.55398 1.33388 1.53405 1.60893 1.78230 1.96473 2.52464 2.82903 3.11592 3.17494 3.34526 3.55658 3.73682 4.02347 4.21042 4.24268 4.35721 4.43753 4.61402 4.64294 4.73400 4.78175 4.91080 5.08951 5.19641 5.29447 5.60837 5.65909 5.72817 5.75122 5.95750 6.14840 6.22842 6.47881 6.63451 7.17605 7.35759 8.68499 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.025430 B = 0.006491 C = 0.005978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.778132 B = 4312.539688 C = 4683.083118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.030 4.030 3 Si 1.120 2.880 4 H -0.272 1.272 5 H -0.272 1.272 6 H -0.286 1.286 7 C -0.602 4.602 8 H 0.056 0.944 9 C 0.163 3.837 10 N -0.279 5.279 11 N -0.548 5.548 12 C 0.494 3.506 13 O -0.576 6.576 14 C -0.167 4.167 15 C 0.095 3.905 16 H 0.117 0.883 17 C -0.081 4.081 18 C -0.114 4.114 19 C -0.132 4.132 20 C -0.121 4.121 21 C -0.122 4.122 22 C -0.114 4.114 23 H 0.257 0.743 24 H 0.029 0.971 25 H -0.026 1.026 26 H 0.426 0.574 27 H 0.130 0.870 28 H 0.116 0.884 29 H 0.104 0.896 30 H 0.133 0.867 31 H 0.148 0.852 32 H 0.151 0.849 33 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.213 -14.835 5.418 16.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.229 4.229 3 Si 0.942 3.058 4 H -0.197 1.197 5 H -0.197 1.197 6 H -0.212 1.212 7 C -0.640 4.640 8 H 0.075 0.925 9 C 0.036 3.964 10 N -0.096 5.096 11 N -0.293 5.293 12 C 0.280 3.720 13 O -0.456 6.456 14 C -0.208 4.208 15 C -0.013 4.013 16 H 0.135 0.865 17 C -0.081 4.081 18 C -0.133 4.133 19 C -0.150 4.150 20 C -0.139 4.139 21 C -0.140 4.140 22 C -0.132 4.132 23 H 0.067 0.933 24 H 0.047 0.953 25 H -0.008 1.008 26 H 0.269 0.731 27 H 0.148 0.852 28 H 0.134 0.866 29 H 0.122 0.878 30 H 0.151 0.849 31 H 0.165 0.835 32 H 0.169 0.831 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.516 -13.293 5.276 14.997 hybrid contribution -0.363 -1.065 -0.907 1.445 sum 4.154 -14.357 4.369 15.572 Atomic orbital electron populations 1.70908 1.07847 1.29942 1.48460 1.27238 0.96502 1.06407 0.92750 0.82869 0.74046 0.71159 0.77753 1.19736 1.19715 1.21199 1.22182 0.94951 0.91904 1.55005 0.92528 1.20375 0.91077 0.90224 0.94713 1.64990 1.24369 1.03360 1.16913 1.45975 1.32882 1.35910 1.14553 1.21922 0.84190 0.82043 0.83846 1.90682 1.63087 1.71694 1.20089 1.22996 0.98703 1.03628 0.95478 1.21992 0.97660 0.87462 0.94145 0.86546 1.19470 0.93945 0.96549 0.98169 1.21103 0.93984 0.98307 0.99891 1.21376 1.00542 0.96116 0.97000 1.21500 0.95430 0.99042 0.97880 1.21444 0.94158 0.98728 0.99639 1.21238 1.01098 0.95574 0.95328 0.93340 0.95297 1.00839 0.73103 0.85223 0.86607 0.87828 0.84912 0.83473 0.83122 0.84140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.20 13.65 21.45 0.29 -54.91 16 2 C -0.03 -1.68 5.46 84.65 0.46 -1.22 16 3 Si 1.12 49.06 29.90 68.60 2.05 51.11 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 6 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.60 -32.36 8.90 25.60 0.23 -32.13 16 8 H 0.06 3.00 7.63 -2.91 -0.02 2.98 16 9 C 0.16 7.84 4.03 85.56 0.34 8.18 16 10 N -0.28 -11.08 4.87 -493.50 -2.40 -13.48 16 11 N -0.55 -21.58 4.33 -172.81 -0.75 -22.33 16 12 C 0.49 19.07 7.96 88.04 0.70 19.77 16 13 O -0.58 -25.60 18.03 -3.05 -0.06 -25.66 16 14 C -0.17 -5.09 6.55 30.81 0.20 -4.89 16 15 C 0.10 3.00 3.07 44.54 0.14 3.13 16 16 H 0.12 3.39 7.59 -2.39 -0.02 3.37 16 17 C -0.08 -2.28 4.98 -19.87 -0.10 -2.38 16 18 C -0.11 -3.35 9.05 22.27 0.20 -3.15 16 19 C -0.13 -3.16 10.05 22.27 0.22 -2.93 16 20 C -0.12 -2.35 10.05 22.27 0.22 -2.13 16 21 C -0.12 -2.32 10.05 22.27 0.22 -2.10 16 22 C -0.11 -2.58 9.69 22.27 0.22 -2.36 16 23 H 0.26 15.17 7.22 -92.71 -0.67 14.50 16 24 H 0.03 1.45 7.86 -2.38 -0.02 1.43 16 25 H -0.03 -1.35 8.01 -2.38 -0.02 -1.37 16 26 H 0.43 16.73 8.73 -215.64 -1.88 14.84 16 27 H 0.13 3.36 7.91 -2.39 -0.02 3.34 16 28 H 0.12 3.32 8.14 -2.39 -0.02 3.30 16 29 H 0.10 3.40 6.28 -2.91 -0.02 3.38 16 30 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16 31 H 0.15 1.97 8.06 -2.91 -0.02 1.94 16 32 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 33 H 0.14 2.56 8.04 -2.91 -0.02 2.53 16 Total: -1.00 -67.04 283.51 1.54 -65.49 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: -0.66 Total: 21.97 kcal Atomic # 6 Polarization: -25.27 SS G_CDS: 3.06 Total: -22.20 kcal Atomic # 7 Polarization: -87.86 SS G_CDS: -2.86 Total: -90.72 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.06 Total: -25.66 kcal Atomic # 14 Polarization: 49.06 SS G_CDS: 2.05 Total: 51.11 kcal Total: -67.04 1.54 -65.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261360007.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.328 kcal (2) G-P(sol) polarization free energy of solvation -67.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds