Wall clock time and date at job start Mon Mar 30 2020 03:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47068 * 2 1 4 4 H 1.08997 * 109.47557 * 176.96323 * 3 2 1 5 5 C 1.50703 * 109.46748 * 56.96563 * 3 2 1 6 6 H 1.08003 * 120.00117 * 240.00145 * 5 3 2 7 7 C 1.37875 * 120.00016 * 60.00438 * 5 3 2 8 8 N 1.31516 * 120.00124 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00277 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47207 * 89.99665 * 9 7 5 11 11 H 1.48497 * 109.47427 * 210.00030 * 9 7 5 12 12 H 1.48508 * 109.47118 * 329.99806 * 9 7 5 13 13 S 1.81403 * 109.47095 * 296.96830 * 3 2 1 14 14 O 1.42101 * 109.46958 * 186.73829 * 13 3 2 15 15 C 1.81398 * 103.00056 * 303.13132 * 13 3 2 16 16 C 1.53000 * 109.47091 * 185.05972 * 15 13 3 17 17 H 1.09002 * 110.27263 * 60.63591 * 16 15 13 18 18 C 1.54941 * 110.30845 * 182.83268 * 16 15 13 19 19 C 1.55308 * 100.94198 * 155.36046 * 18 16 15 20 20 C 1.54379 * 102.25036 * 325.86544 * 19 18 16 21 21 O 1.43235 * 107.59024 * 21.35863 * 20 19 18 22 22 H 1.08992 * 109.47412 * 55.14629 * 1 2 3 23 23 H 1.09002 * 109.46950 * 295.14023 * 1 2 3 24 24 H 1.09000 * 109.46523 * 175.14608 * 1 2 3 25 25 H 1.08999 * 109.47332 * 120.00069 * 2 1 3 26 26 H 1.09002 * 109.47453 * 240.00581 * 2 1 3 27 27 H 0.96999 * 120.00172 * 180.02562 * 8 7 5 28 28 H 1.08997 * 109.46657 * 305.05956 * 15 13 3 29 29 H 1.09003 * 109.46758 * 65.05847 * 15 13 3 30 30 H 1.08999 * 111.12569 * 273.28167 * 18 16 15 31 31 H 1.09001 * 111.12860 * 37.44197 * 18 16 15 32 32 H 1.08997 * 110.84598 * 207.67906 * 19 18 16 33 33 H 1.08997 * 111.02365 * 84.13546 * 19 18 16 34 34 H 1.09002 * 109.83341 * 261.84512 * 20 19 18 35 35 H 1.08999 * 109.82864 * 140.86964 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1286 1.4431 0.0544 5 6 1.4771 2.1743 1.1912 6 1 0.8623 3.0502 1.0458 7 6 1.7472 1.7255 2.4666 8 7 2.4955 0.6587 2.6437 9 14 1.0501 2.6329 3.9432 10 1 -0.2770 2.0650 4.2918 11 1 1.9720 2.4818 5.0975 12 1 0.9011 4.0733 3.6139 13 16 1.5103 2.2712 -1.5243 14 8 2.1118 3.5564 -1.5983 15 6 2.1936 1.2078 -2.8254 16 6 1.9372 1.8456 -4.1923 17 1 2.4215 2.8204 -4.2511 18 6 2.4503 0.9188 -5.3230 19 6 1.5619 1.3819 -6.5097 20 6 0.2336 1.7343 -5.8065 21 8 0.5257 1.9753 -4.4251 22 1 -0.3634 0.5872 -0.8432 23 1 -0.3633 0.4366 0.9303 24 1 -0.3632 -1.0240 -0.0870 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 2.6852 0.3427 3.5410 28 1 3.2668 1.0924 -2.6739 29 1 1.7136 0.2300 -2.7849 30 1 3.5056 1.0975 -5.5290 31 1 2.2708 -0.1294 -5.0836 32 1 1.4189 0.5728 -7.2260 33 1 1.9872 2.2589 -6.9975 34 1 -0.4649 0.9024 -5.8971 35 1 -0.1961 2.6299 -6.2553 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000300051165.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:22 Heat of formation + Delta-G solvation = -98.505216 kcal Electronic energy + Delta-G solvation = -16539.542687 eV Core-core repulsion = 13856.909417 eV Total energy + Delta-G solvation = -2682.633270 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.27229 -34.90779 -34.43050 -32.22177 -31.57746 -31.13974 -27.09017 -26.04021 -23.77016 -21.72584 -21.10327 -20.22309 -17.01090 -16.55969 -16.01762 -15.79376 -15.02053 -14.72312 -14.22109 -13.76837 -13.64924 -13.31782 -12.86239 -12.57692 -12.21944 -12.00902 -11.75434 -11.47546 -11.24462 -11.10822 -10.96383 -10.86191 -10.74497 -10.58570 -10.32914 -9.95349 -9.79216 -9.40066 -9.12208 -8.67691 -8.46753 -6.95574 -6.07090 -4.17231 2.56785 3.27992 3.34760 3.41060 3.86661 3.92075 4.38233 4.46919 4.69691 4.83589 5.02553 5.21000 5.26027 5.27971 5.48681 5.59218 5.68118 5.75297 5.81815 5.95857 6.12410 6.28968 6.32040 6.44065 6.50927 6.86882 7.11254 7.13603 7.25004 7.49119 7.69048 7.86856 8.17427 8.82576 9.46094 10.97901 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.045100 B = 0.006055 C = 0.005877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.694270 B = 4622.890612 C = 4762.911395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.096 4.096 3 C -0.226 4.226 4 H 0.042 0.958 5 C -0.498 4.498 6 H 0.062 0.938 7 C 0.072 3.928 8 N -0.883 5.883 9 Si 0.894 3.106 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.271 1.271 13 S 1.212 4.788 14 O -0.873 6.873 15 C -0.457 4.457 16 C 0.106 3.894 17 H 0.072 0.928 18 C -0.148 4.148 19 C -0.158 4.158 20 C 0.051 3.949 21 O -0.373 6.373 22 H 0.043 0.957 23 H 0.066 0.934 24 H 0.031 0.969 25 H 0.096 0.904 26 H 0.022 0.978 27 H 0.262 0.738 28 H 0.088 0.912 29 H 0.118 0.882 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.524 -3.658 -14.203 15.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.136 4.136 3 C -0.348 4.348 4 H 0.060 0.940 5 C -0.538 4.538 6 H 0.081 0.919 7 C -0.131 4.131 8 N -0.521 5.521 9 Si 0.721 3.279 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.196 1.196 13 S 1.415 4.585 14 O -0.869 6.869 15 C -0.591 4.591 16 C 0.048 3.952 17 H 0.090 0.910 18 C -0.187 4.187 19 C -0.195 4.195 20 C -0.026 4.026 21 O -0.293 6.293 22 H 0.062 0.938 23 H 0.085 0.915 24 H 0.050 0.950 25 H 0.114 0.886 26 H 0.040 0.960 27 H 0.072 0.928 28 H 0.107 0.893 29 H 0.136 0.864 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.088 0.912 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.099 -2.851 -14.067 15.232 hybrid contribution 2.288 0.101 0.855 2.445 sum -2.811 -2.750 -13.212 13.785 Atomic orbital electron populations 1.21714 0.96958 0.98880 1.02188 1.21242 0.95071 0.96119 1.01127 1.24783 1.02443 1.00743 1.06818 0.94015 1.20377 1.32476 1.11713 0.89209 0.91944 1.24885 0.94674 0.94871 0.98710 1.69875 1.37024 1.23140 1.22035 0.86539 0.78957 0.80476 0.81883 1.20151 1.21156 1.19614 1.70330 1.17747 0.82948 0.87515 1.92950 1.79271 1.29662 1.84984 1.27850 1.08583 1.13288 1.09410 1.22440 0.81840 0.97661 0.93256 0.91043 1.23327 1.00206 1.00774 0.94382 1.23126 0.96095 1.01918 0.98409 1.23089 0.96675 1.00574 0.82284 1.88445 1.23490 1.92040 1.25288 0.93757 0.91455 0.94961 0.88616 0.95969 0.92823 0.89325 0.86364 0.90285 0.89981 0.90208 0.90758 0.91210 0.91578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.40 37.16 0.35 -2.29 16 2 C -0.10 -2.08 5.31 -26.73 -0.14 -2.22 16 3 C -0.23 -5.56 2.56 -27.88 -0.07 -5.63 16 4 H 0.04 1.15 8.14 -51.93 -0.42 0.73 16 5 C -0.50 -13.53 7.27 -34.44 -0.25 -13.78 16 6 H 0.06 1.70 7.71 -52.48 -0.40 1.29 16 7 C 0.07 1.97 5.30 -17.82 -0.09 1.87 16 8 N -0.88 -24.64 11.35 55.43 0.63 -24.01 16 9 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 13 S 1.21 25.77 10.91 -107.50 -1.17 24.60 16 14 O -0.87 -23.43 18.13 -35.23 -0.64 -24.07 16 15 C -0.46 -7.78 5.00 37.16 0.19 -7.59 16 16 C 0.11 1.64 3.47 -25.71 -0.09 1.55 16 17 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 18 C -0.15 -1.72 6.57 -24.48 -0.16 -1.88 16 19 C -0.16 -1.51 7.02 -24.78 -0.17 -1.69 16 20 C 0.05 0.56 7.79 37.88 0.30 0.85 16 21 O -0.37 -5.67 10.72 -35.23 -0.38 -6.04 16 22 H 0.04 0.72 6.88 -51.93 -0.36 0.36 16 23 H 0.07 1.40 7.32 -51.93 -0.38 1.02 16 24 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 25 H 0.10 2.36 6.16 -51.93 -0.32 2.04 16 26 H 0.02 0.41 6.53 -51.93 -0.34 0.07 16 27 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 28 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 29 H 0.12 1.77 7.13 -51.92 -0.37 1.40 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 0.89 8.06 -51.93 -0.42 0.48 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 293.03 15.07 4.42 4.42 Total: -1.00 -32.92 293.03 -7.85 -40.76 By element: Atomic # 1 Polarization: 4.59 SS G_CDS: -5.53 Total: -0.94 kcal Atomic # 6 Polarization: -30.66 SS G_CDS: -0.15 Total: -30.81 kcal Atomic # 7 Polarization: -24.64 SS G_CDS: 0.63 Total: -24.01 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -1.02 Total: -30.11 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 25.77 SS G_CDS: -1.17 Total: 24.60 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -32.92 -7.85 -40.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300051165.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.742 kcal (2) G-P(sol) polarization free energy of solvation -32.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds