Wall clock time and date at job start Mon Mar 30 2020 03:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47068 * 2 1 4 4 H 1.08997 * 109.47557 * 176.96323 * 3 2 1 5 5 C 1.50703 * 109.46748 * 56.96563 * 3 2 1 6 6 H 1.08003 * 120.00117 * 240.00145 * 5 3 2 7 7 C 1.37875 * 120.00016 * 60.00438 * 5 3 2 8 8 N 1.31516 * 120.00124 * 359.97438 * 7 5 3 9 9 Si 1.86799 * 120.00277 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47207 * 89.99665 * 9 7 5 11 11 H 1.48497 * 109.47427 * 210.00030 * 9 7 5 12 12 H 1.48508 * 109.47118 * 329.99806 * 9 7 5 13 13 S 1.81403 * 109.47095 * 296.96830 * 3 2 1 14 14 O 1.42101 * 109.46958 * 186.73829 * 13 3 2 15 15 C 1.81398 * 103.00056 * 303.13132 * 13 3 2 16 16 C 1.53000 * 109.47091 * 185.05972 * 15 13 3 17 17 H 1.09002 * 110.27263 * 60.63591 * 16 15 13 18 18 C 1.54941 * 110.30845 * 182.83268 * 16 15 13 19 19 C 1.55308 * 100.94198 * 155.36046 * 18 16 15 20 20 C 1.54379 * 102.25036 * 325.86544 * 19 18 16 21 21 O 1.43235 * 107.59024 * 21.35863 * 20 19 18 22 22 H 1.08992 * 109.47412 * 55.14629 * 1 2 3 23 23 H 1.09002 * 109.46950 * 295.14023 * 1 2 3 24 24 H 1.09000 * 109.46523 * 175.14608 * 1 2 3 25 25 H 1.08999 * 109.47332 * 120.00069 * 2 1 3 26 26 H 1.09002 * 109.47453 * 240.00581 * 2 1 3 27 27 H 0.96999 * 120.00172 * 180.02562 * 8 7 5 28 28 H 1.08997 * 109.46657 * 305.05956 * 15 13 3 29 29 H 1.09003 * 109.46758 * 65.05847 * 15 13 3 30 30 H 1.08999 * 111.12569 * 273.28167 * 18 16 15 31 31 H 1.09001 * 111.12860 * 37.44197 * 18 16 15 32 32 H 1.08997 * 110.84598 * 207.67906 * 19 18 16 33 33 H 1.08997 * 111.02365 * 84.13546 * 19 18 16 34 34 H 1.09002 * 109.83341 * 261.84512 * 20 19 18 35 35 H 1.08999 * 109.82864 * 140.86964 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1286 1.4431 0.0544 5 6 1.4771 2.1743 1.1912 6 1 0.8623 3.0502 1.0458 7 6 1.7472 1.7255 2.4666 8 7 2.4955 0.6587 2.6437 9 14 1.0501 2.6329 3.9432 10 1 -0.2770 2.0650 4.2918 11 1 1.9720 2.4818 5.0975 12 1 0.9011 4.0733 3.6139 13 16 1.5103 2.2712 -1.5243 14 8 2.1118 3.5564 -1.5983 15 6 2.1936 1.2078 -2.8254 16 6 1.9372 1.8456 -4.1923 17 1 2.4215 2.8204 -4.2511 18 6 2.4503 0.9188 -5.3230 19 6 1.5619 1.3819 -6.5097 20 6 0.2336 1.7343 -5.8065 21 8 0.5257 1.9753 -4.4251 22 1 -0.3634 0.5872 -0.8432 23 1 -0.3633 0.4366 0.9303 24 1 -0.3632 -1.0240 -0.0870 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 2.6852 0.3427 3.5410 28 1 3.2668 1.0924 -2.6739 29 1 1.7136 0.2300 -2.7849 30 1 3.5056 1.0975 -5.5290 31 1 2.2708 -0.1294 -5.0836 32 1 1.4189 0.5728 -7.2260 33 1 1.9872 2.2589 -6.9975 34 1 -0.4649 0.9024 -5.8971 35 1 -0.1961 2.6299 -6.2553 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000300051165.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:58:21 Heat of formation + Delta-G solvation = -121.852512 kcal Electronic energy + Delta-G solvation = -16540.555101 eV Core-core repulsion = 13856.909417 eV Total energy + Delta-G solvation = -2683.645684 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 246.108 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.29675 -36.80543 -36.39139 -33.46862 -33.13392 -32.41887 -28.95863 -27.19133 -25.62391 -22.56586 -22.27803 -21.99369 -18.66141 -17.96165 -17.76599 -17.14420 -16.63323 -15.97997 -15.81939 -15.40867 -15.27616 -14.65834 -14.26330 -14.11008 -13.74330 -13.51633 -13.14064 -12.78397 -12.68470 -12.60092 -12.50370 -12.40016 -12.20256 -12.07517 -11.69826 -11.65890 -11.51335 -11.02804 -10.58962 -10.45252 -10.38747 -8.79710 -8.13428 -6.31025 0.87794 1.40035 1.41305 1.51934 2.15008 2.40367 2.86134 3.06035 3.19360 3.57672 3.85432 4.00642 4.12260 4.23708 4.46095 4.61039 4.63037 4.70891 4.76384 4.82640 4.88315 4.96337 5.01486 5.10500 5.28238 5.29737 5.34016 5.49409 5.63467 5.85530 5.99663 6.09559 6.24458 6.75170 7.35103 8.89775 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.045100 B = 0.006055 C = 0.005877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 620.694270 B = 4622.890612 C = 4762.911395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.092 4.092 3 C -0.236 4.236 4 H -0.004 1.004 5 C -0.519 4.519 6 H 0.053 0.947 7 C 0.028 3.972 8 N -0.907 5.907 9 Si 0.950 3.050 10 H -0.257 1.257 11 H -0.284 1.284 12 H -0.277 1.277 13 S 1.245 4.755 14 O -0.937 6.937 15 C -0.441 4.441 16 C 0.099 3.901 17 H 0.045 0.955 18 C -0.143 4.143 19 C -0.149 4.149 20 C 0.038 3.962 21 O -0.396 6.396 22 H 0.068 0.932 23 H 0.042 0.958 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.263 0.737 28 H 0.087 0.913 29 H 0.150 0.850 30 H 0.087 0.913 31 H 0.096 0.904 32 H 0.108 0.892 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.752 -5.101 -16.107 17.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.131 4.131 3 C -0.356 4.356 4 H 0.014 0.986 5 C -0.558 4.558 6 H 0.071 0.929 7 C -0.174 4.174 8 N -0.545 5.545 9 Si 0.774 3.226 10 H -0.182 1.182 11 H -0.209 1.209 12 H -0.202 1.202 13 S 1.450 4.550 14 O -0.933 6.933 15 C -0.579 4.579 16 C 0.040 3.960 17 H 0.063 0.937 18 C -0.182 4.182 19 C -0.187 4.187 20 C -0.038 4.038 21 O -0.316 6.316 22 H 0.087 0.913 23 H 0.061 0.939 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.105 0.895 29 H 0.168 0.832 30 H 0.105 0.895 31 H 0.115 0.885 32 H 0.127 0.873 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.348 -4.279 -15.938 17.681 hybrid contribution 2.695 0.507 1.295 3.033 sum -3.653 -3.772 -14.642 15.555 Atomic orbital electron populations 1.21684 0.94644 1.01125 1.02023 1.21163 0.97113 0.93777 1.01065 1.24897 0.99388 1.03018 1.08347 0.98598 1.20661 1.32617 1.11723 0.90757 0.92896 1.25610 0.94995 0.95585 1.01174 1.70000 1.37824 1.24144 1.22531 0.85680 0.79144 0.78975 0.78763 1.18183 1.20914 1.20184 1.69387 1.17378 0.81609 0.86604 1.92850 1.80802 1.33645 1.85997 1.27670 1.08670 1.13340 1.08234 1.22416 0.82696 0.97380 0.93489 0.93656 1.23326 1.01015 1.00485 0.93326 1.23139 0.94481 1.03092 0.97988 1.23416 0.98010 1.01959 0.80446 1.88414 1.22859 1.92306 1.28044 0.91277 0.93915 0.91875 0.91911 0.92780 0.92761 0.89453 0.83161 0.89450 0.88522 0.87312 0.90380 0.89104 0.90765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.95 9.40 71.98 0.68 -4.27 16 2 C -0.09 -3.92 5.31 30.60 0.16 -3.76 16 3 C -0.24 -11.89 2.56 29.85 0.08 -11.81 16 4 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 5 C -0.52 -28.99 7.27 25.60 0.19 -28.81 16 6 H 0.05 2.98 7.71 -2.91 -0.02 2.96 16 7 C 0.03 1.53 5.30 84.65 0.45 1.98 16 8 N -0.91 -51.81 11.35 21.45 0.24 -51.57 16 9 Si 0.95 43.83 29.54 68.60 2.03 45.86 16 10 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 13 S 1.24 53.39 10.91 -56.49 -0.62 52.78 16 14 O -0.94 -52.07 18.13 -148.98 -2.70 -54.77 16 15 C -0.44 -14.29 5.00 71.98 0.36 -13.93 16 16 C 0.10 2.88 3.47 31.26 0.11 2.99 16 17 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 18 C -0.14 -2.82 6.57 32.05 0.21 -2.61 16 19 C -0.15 -2.29 7.02 31.86 0.22 -2.06 16 20 C 0.04 0.71 7.79 72.45 0.56 1.27 16 21 O -0.40 -11.18 10.72 -148.98 -1.60 -12.77 16 22 H 0.07 2.10 6.88 -2.39 -0.02 2.09 16 23 H 0.04 1.74 7.32 -2.39 -0.02 1.72 16 24 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.06 3.13 6.16 -2.39 -0.01 3.12 16 26 H 0.05 1.91 6.53 -2.39 -0.02 1.90 16 27 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 28 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 29 H 0.15 3.94 7.13 -2.39 -0.02 3.92 16 30 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.10 1.66 8.06 -2.39 -0.02 1.64 16 32 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -74.51 293.03 1.43 -73.09 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: 1.05 Total: 8.42 kcal Atomic # 6 Polarization: -64.04 SS G_CDS: 3.02 Total: -61.03 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: 0.24 Total: -51.57 kcal Atomic # 8 Polarization: -63.24 SS G_CDS: -4.30 Total: -67.54 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: 53.39 SS G_CDS: -0.62 Total: 52.78 kcal Total: -74.51 1.43 -73.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000300051165.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.767 kcal (2) G-P(sol) polarization free energy of solvation -74.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds