Wall clock time and date at job start Mon Mar 30 2020 04:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30870 * 1 3 3 Si 1.86794 * 120.00135 * 2 1 4 4 H 1.48504 * 109.47059 * 240.00200 * 3 2 1 5 5 H 1.48499 * 109.47257 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47589 * 120.00119 * 3 2 1 7 7 C 1.39911 * 119.99597 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99731 * 197.07227 * 7 2 1 9 9 C 1.41132 * 120.00282 * 17.06723 * 7 2 1 10 10 C 1.40889 * 120.16113 * 205.74099 * 9 7 2 11 11 C 1.36356 * 119.82956 * 180.25261 * 10 9 7 12 12 C 1.39517 * 120.16270 * 359.50126 * 11 10 9 13 13 N 1.39103 * 119.83334 * 180.25340 * 12 11 10 14 14 C 1.34785 * 119.99950 * 35.92451 * 13 12 11 15 15 O 1.21625 * 119.99799 * 355.49899 * 14 13 12 16 16 C 1.47033 * 119.99976 * 175.49943 * 14 13 12 17 17 C 1.33039 * 120.00087 * 179.97438 * 16 14 13 18 18 C 1.50698 * 120.00112 * 180.02562 * 17 16 14 19 19 N 1.46900 * 109.47143 * 125.00101 * 18 17 16 20 20 C 1.39512 * 120.32943 * 0.27348 * 12 11 10 21 21 C 1.36353 * 120.17189 * 359.97438 * 20 12 11 22 22 H 0.97000 * 119.99647 * 359.97438 * 1 2 3 23 23 H 1.08004 * 120.08284 * 0.03191 * 10 9 7 24 24 H 1.07996 * 119.91302 * 179.77302 * 11 10 9 25 25 H 0.96997 * 120.00536 * 215.91878 * 13 12 11 26 26 H 1.07999 * 120.00305 * 0.02562 * 16 14 13 27 27 H 1.08005 * 120.00003 * 359.97438 * 17 16 14 28 28 H 1.09004 * 109.46874 * 244.99586 * 18 17 16 29 29 H 1.08998 * 109.47360 * 4.99653 * 18 17 16 30 30 H 1.00904 * 110.99852 * 180.02562 * 19 18 17 31 31 H 1.00899 * 110.99920 * 303.94845 * 19 18 17 32 32 H 1.08010 * 119.91581 * 179.97438 * 20 12 11 33 33 H 1.07994 * 120.09015 * 180.02562 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.0964 1.6963 -1.2126 5 1 1.2778 2.7464 -0.0006 6 1 3.0965 1.6964 1.2124 7 6 2.0082 -1.2117 -0.0005 8 1 3.0525 -1.2325 0.2741 9 6 1.3491 -2.4069 -0.3598 10 6 1.8134 -3.6450 0.1265 11 6 1.1746 -4.7960 -0.2290 12 6 0.0577 -4.7488 -1.0638 13 7 -0.5919 -5.9267 -1.4179 14 6 -0.6942 -6.9337 -0.5278 15 8 -0.1487 -6.8454 0.5556 16 6 -1.4654 -8.1389 -0.8666 17 6 -1.5660 -9.1330 0.0117 18 6 -2.3558 -10.3685 -0.3357 19 7 -1.5067 -11.5555 -0.1691 20 6 -0.4107 -3.5260 -1.5454 21 6 0.2208 -2.3672 -1.2025 22 1 -0.4849 0.8401 0.0004 23 1 2.6752 -3.6826 0.7764 24 1 1.5315 -5.7461 0.1400 25 1 -0.9713 -6.0235 -2.3053 26 1 -1.9495 -8.2175 -1.8288 27 1 -1.0808 -9.0550 0.9736 28 1 -3.2202 -10.4446 0.3241 29 1 -2.6930 -10.3052 -1.3703 30 1 -2.0138 -12.3977 -0.3967 31 1 -0.6662 -11.4794 -0.7222 32 1 -1.2757 -3.4973 -2.1915 33 1 -0.1431 -1.4214 -1.5757 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304533850.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:44 Heat of formation + Delta-G solvation = -0.812264 kcal Electronic energy + Delta-G solvation = -16448.878505 eV Core-core repulsion = 13667.330319 eV Total energy + Delta-G solvation = -2781.548185 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.59997 -37.33673 -35.90398 -34.40869 -32.96229 -31.89273 -29.56229 -28.93677 -26.10178 -24.54220 -22.02465 -21.07029 -20.13888 -19.23541 -17.45888 -17.11086 -16.47481 -15.88646 -15.20951 -14.90888 -14.47222 -13.99584 -13.79423 -13.69847 -13.00880 -12.70618 -12.33737 -12.08963 -11.83458 -11.68598 -11.31328 -11.09013 -11.04184 -10.74358 -10.04754 -9.57480 -9.52114 -9.34415 -9.09855 -9.05855 -8.85970 -7.52566 -6.97468 -6.73767 -4.29494 1.42074 2.71706 3.06462 3.08902 3.11796 3.17855 3.72113 3.80578 3.93465 4.37986 4.63715 4.78989 4.89594 5.20957 5.36336 5.48572 5.71834 6.20149 6.25197 6.39127 6.48781 6.77120 6.80327 6.98673 7.05472 7.07576 7.21300 7.31020 7.61627 7.76045 7.91428 8.04676 8.29596 8.32566 8.60179 8.80522 8.88851 9.02090 10.18182 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.073162 B = 0.003841 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 382.621212 B = 7288.551792 C = 7459.836256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.074 3.926 3 Si 0.910 3.090 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.458 4.458 8 H 0.078 0.922 9 C 0.107 3.893 10 C -0.217 4.217 11 C -0.075 4.075 12 C -0.012 4.012 13 N -0.644 5.644 14 C 0.526 3.474 15 O -0.535 6.535 16 C -0.199 4.199 17 C -0.078 4.078 18 C 0.085 3.915 19 N -0.848 5.848 20 C -0.112 4.112 21 C -0.154 4.154 22 H 0.281 0.719 23 H 0.095 0.905 24 H 0.106 0.894 25 H 0.395 0.605 26 H 0.121 0.879 27 H 0.132 0.868 28 H 0.088 0.912 29 H 0.035 0.965 30 H 0.344 0.656 31 H 0.345 0.655 32 H 0.090 0.910 33 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.783 -12.429 -5.370 14.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.418 5.418 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.188 1.188 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.488 4.488 8 H 0.096 0.904 9 C 0.104 3.896 10 C -0.238 4.238 11 C -0.095 4.095 12 C -0.105 4.105 13 N -0.286 5.286 14 C 0.314 3.686 15 O -0.414 6.414 16 C -0.221 4.221 17 C -0.098 4.098 18 C -0.045 4.045 19 N -0.378 5.378 20 C -0.132 4.132 21 C -0.174 4.174 22 H 0.092 0.908 23 H 0.113 0.887 24 H 0.124 0.876 25 H 0.228 0.772 26 H 0.139 0.861 27 H 0.150 0.850 28 H 0.106 0.894 29 H 0.054 0.946 30 H 0.157 0.843 31 H 0.157 0.843 32 H 0.108 0.892 33 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.595 -11.982 -3.817 13.388 hybrid contribution -0.197 0.657 -1.465 1.618 sum -4.792 -11.325 -5.283 13.384 Atomic orbital electron populations 1.69839 1.07579 1.29332 1.35067 1.25933 0.94753 1.01354 0.92297 0.86342 0.80113 0.80124 0.80000 1.18817 1.20357 1.18976 1.19536 0.97907 0.91206 1.40112 0.90367 1.17671 0.91268 0.92159 0.88500 1.20679 1.04026 0.92670 1.06383 1.20387 0.93589 0.97928 0.97568 1.17177 0.98434 0.83991 1.10853 1.42854 1.55895 1.14738 1.15072 1.18530 0.81687 0.83849 0.84502 1.90777 1.47127 1.80296 1.23228 1.22746 1.03144 0.95412 1.00820 1.23622 0.94128 0.92474 0.99570 1.20923 0.95551 0.88584 0.99404 1.58609 1.10055 1.03946 1.65174 1.20239 0.99089 0.91803 1.02095 1.20881 0.99357 0.96325 1.00868 0.90797 0.88684 0.87589 0.77177 0.86115 0.84976 0.89430 0.94635 0.84324 0.84261 0.89199 0.86147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.61 10.97 55.55 0.61 -20.00 16 2 C 0.07 1.88 5.14 -17.34 -0.09 1.79 16 3 Si 0.91 18.70 29.59 -169.99 -5.03 13.67 16 4 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 5 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 6 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 7 C -0.46 -12.29 9.04 -37.86 -0.34 -12.64 16 8 H 0.08 2.01 7.90 -52.48 -0.41 1.60 16 9 C 0.11 2.90 5.57 -106.79 -0.59 2.31 16 10 C -0.22 -5.66 9.74 -39.26 -0.38 -6.04 16 11 C -0.07 -1.86 8.61 -39.78 -0.34 -2.20 16 12 C -0.01 -0.28 6.29 -83.61 -0.53 -0.80 16 13 N -0.64 -11.76 5.29 -10.83 -0.06 -11.81 16 14 C 0.53 9.62 7.59 -12.69 -0.10 9.53 16 15 O -0.54 -12.12 13.67 5.26 0.07 -12.05 16 16 C -0.20 -2.58 9.64 -37.82 -0.36 -2.94 16 17 C -0.08 -0.94 9.35 -36.11 -0.34 -1.27 16 18 C 0.09 0.74 7.23 -4.98 -0.04 0.70 16 19 N -0.85 -6.88 9.61 -11.41 -0.11 -6.99 16 20 C -0.11 -2.61 9.90 -39.79 -0.39 -3.01 16 21 C -0.15 -4.02 8.63 -39.26 -0.34 -4.36 16 22 H 0.28 6.64 8.30 -40.82 -0.34 6.31 16 23 H 0.09 2.35 8.06 -52.48 -0.42 1.92 16 24 H 0.11 2.61 6.26 -52.49 -0.33 2.28 16 25 H 0.39 5.59 8.80 -40.82 -0.36 5.23 16 26 H 0.12 1.16 7.87 -52.49 -0.41 0.74 16 27 H 0.13 1.90 7.49 -52.48 -0.39 1.51 16 28 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.04 0.26 7.82 -51.93 -0.41 -0.15 16 30 H 0.34 1.98 9.08 -39.29 -0.36 1.62 16 31 H 0.34 2.61 8.99 -39.29 -0.35 2.26 16 32 H 0.09 1.82 8.06 -52.48 -0.42 1.40 16 33 H 0.12 3.19 6.20 -52.49 -0.33 2.86 16 LS Contribution 290.13 15.07 4.37 4.37 Total: -1.00 -31.26 290.13 -7.74 -39.00 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -3.75 Total: 12.74 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: -3.84 Total: -18.93 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.44 Total: -38.81 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.07 Total: -12.05 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.26 -7.74 -39.00 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304533850.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.183 kcal (2) G-P(sol) polarization free energy of solvation -31.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds