Wall clock time and date at job start Mon Mar 30 2020 04:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30870 * 1 3 3 Si 1.86794 * 120.00135 * 2 1 4 4 H 1.48504 * 109.47059 * 240.00200 * 3 2 1 5 5 H 1.48499 * 109.47257 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47589 * 120.00119 * 3 2 1 7 7 C 1.39911 * 119.99597 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99731 * 197.07227 * 7 2 1 9 9 C 1.41132 * 120.00282 * 17.06723 * 7 2 1 10 10 C 1.40889 * 120.16113 * 205.74099 * 9 7 2 11 11 C 1.36356 * 119.82956 * 180.25261 * 10 9 7 12 12 C 1.39517 * 120.16270 * 359.50126 * 11 10 9 13 13 N 1.39103 * 119.83334 * 180.25340 * 12 11 10 14 14 C 1.34785 * 119.99950 * 35.92451 * 13 12 11 15 15 O 1.21625 * 119.99799 * 355.49899 * 14 13 12 16 16 C 1.47033 * 119.99976 * 175.49943 * 14 13 12 17 17 C 1.33039 * 120.00087 * 179.97438 * 16 14 13 18 18 C 1.50698 * 120.00112 * 180.02562 * 17 16 14 19 19 N 1.46900 * 109.47143 * 125.00101 * 18 17 16 20 20 C 1.39512 * 120.32943 * 0.27348 * 12 11 10 21 21 C 1.36353 * 120.17189 * 359.97438 * 20 12 11 22 22 H 0.97000 * 119.99647 * 359.97438 * 1 2 3 23 23 H 1.08004 * 120.08284 * 0.03191 * 10 9 7 24 24 H 1.07996 * 119.91302 * 179.77302 * 11 10 9 25 25 H 0.96997 * 120.00536 * 215.91878 * 13 12 11 26 26 H 1.07999 * 120.00305 * 0.02562 * 16 14 13 27 27 H 1.08005 * 120.00003 * 359.97438 * 17 16 14 28 28 H 1.09004 * 109.46874 * 244.99586 * 18 17 16 29 29 H 1.08998 * 109.47360 * 4.99653 * 18 17 16 30 30 H 1.00904 * 110.99852 * 180.02562 * 19 18 17 31 31 H 1.00899 * 110.99920 * 303.94845 * 19 18 17 32 32 H 1.08010 * 119.91581 * 179.97438 * 20 12 11 33 33 H 1.07994 * 120.09015 * 180.02562 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.0964 1.6963 -1.2126 5 1 1.2778 2.7464 -0.0006 6 1 3.0965 1.6964 1.2124 7 6 2.0082 -1.2117 -0.0005 8 1 3.0525 -1.2325 0.2741 9 6 1.3491 -2.4069 -0.3598 10 6 1.8134 -3.6450 0.1265 11 6 1.1746 -4.7960 -0.2290 12 6 0.0577 -4.7488 -1.0638 13 7 -0.5919 -5.9267 -1.4179 14 6 -0.6942 -6.9337 -0.5278 15 8 -0.1487 -6.8454 0.5556 16 6 -1.4654 -8.1389 -0.8666 17 6 -1.5660 -9.1330 0.0117 18 6 -2.3558 -10.3685 -0.3357 19 7 -1.5067 -11.5555 -0.1691 20 6 -0.4107 -3.5260 -1.5454 21 6 0.2208 -2.3672 -1.2025 22 1 -0.4849 0.8401 0.0004 23 1 2.6752 -3.6826 0.7764 24 1 1.5315 -5.7461 0.1400 25 1 -0.9713 -6.0235 -2.3053 26 1 -1.9495 -8.2175 -1.8288 27 1 -1.0808 -9.0550 0.9736 28 1 -3.2202 -10.4446 0.3241 29 1 -2.6930 -10.3052 -1.3703 30 1 -2.0138 -12.3977 -0.3967 31 1 -0.6662 -11.4794 -0.7222 32 1 -1.2757 -3.4973 -2.1915 33 1 -0.1431 -1.4214 -1.5757 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304533850.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:26:44 Heat of formation + Delta-G solvation = -23.212915 kcal Electronic energy + Delta-G solvation = -16449.849870 eV Core-core repulsion = 13667.330319 eV Total energy + Delta-G solvation = -2782.519551 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.18619 -39.13255 -36.81218 -36.13350 -34.76145 -32.87105 -31.49563 -30.78960 -27.49851 -25.96715 -23.62749 -22.83546 -21.74145 -20.46637 -19.31883 -18.54458 -17.97286 -17.07167 -16.73826 -16.12261 -15.98259 -15.67921 -14.98820 -14.79696 -14.59286 -14.45063 -14.00294 -13.69575 -13.23901 -13.12145 -12.89149 -12.76630 -12.71192 -12.47753 -11.81750 -11.46418 -11.15705 -10.86004 -10.62651 -10.52098 -9.65632 -9.49180 -8.87679 -8.61978 -6.29697 0.27977 0.91656 1.12803 1.39045 1.49840 1.53257 2.21206 2.32347 2.40226 2.75687 3.66361 3.71557 3.86179 4.10304 4.28651 4.38239 4.51576 4.57398 4.72834 4.90684 5.09541 5.14583 5.25919 5.33367 5.41574 5.46311 5.65073 5.89835 6.01708 6.09314 6.18810 6.35618 6.58229 6.62850 6.75684 6.90888 6.97389 7.41270 8.31821 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.073162 B = 0.003841 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 382.621212 B = 7288.551792 C = 7459.836256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.035 3.965 3 Si 0.986 3.014 4 H -0.258 1.258 5 H -0.265 1.265 6 H -0.262 1.262 7 C -0.497 4.497 8 H 0.075 0.925 9 C 0.076 3.924 10 C -0.237 4.237 11 C -0.088 4.088 12 C 0.001 3.999 13 N -0.636 5.636 14 C 0.520 3.480 15 O -0.587 6.587 16 C -0.202 4.202 17 C -0.061 4.061 18 C 0.091 3.909 19 N -0.860 5.860 20 C -0.109 4.109 21 C -0.172 4.172 22 H 0.290 0.710 23 H 0.093 0.907 24 H 0.103 0.897 25 H 0.419 0.581 26 H 0.167 0.833 27 H 0.101 0.899 28 H 0.097 0.903 29 H 0.063 0.937 30 H 0.359 0.641 31 H 0.348 0.652 32 H 0.126 0.874 33 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.241 -13.358 -6.812 16.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.180 4.180 3 Si 0.806 3.194 4 H -0.182 1.182 5 H -0.189 1.189 6 H -0.187 1.187 7 C -0.526 4.526 8 H 0.093 0.907 9 C 0.074 3.926 10 C -0.257 4.257 11 C -0.108 4.108 12 C -0.093 4.093 13 N -0.280 5.280 14 C 0.312 3.688 15 O -0.469 6.469 16 C -0.224 4.224 17 C -0.082 4.082 18 C -0.039 4.039 19 N -0.393 5.393 20 C -0.129 4.129 21 C -0.192 4.192 22 H 0.101 0.899 23 H 0.111 0.889 24 H 0.121 0.879 25 H 0.256 0.744 26 H 0.184 0.816 27 H 0.119 0.881 28 H 0.115 0.885 29 H 0.081 0.919 30 H 0.174 0.826 31 H 0.161 0.839 32 H 0.144 0.856 33 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.085 -12.958 -5.300 15.265 hybrid contribution 0.193 0.741 -0.972 1.237 sum -5.891 -12.217 -6.272 14.944 Atomic orbital electron populations 1.69877 1.08977 1.30807 1.35274 1.26790 0.95563 1.04538 0.91132 0.85198 0.78746 0.75372 0.80051 1.18246 1.18926 1.18662 1.19777 0.98134 0.92459 1.42240 0.90701 1.17996 0.92380 0.92729 0.89520 1.20804 1.04603 0.93191 1.07116 1.20494 0.94568 0.97307 0.98454 1.17258 0.97372 0.85786 1.08895 1.42765 1.55481 1.13265 1.16491 1.19470 0.80958 0.84858 0.83508 1.90760 1.49315 1.81395 1.25481 1.22662 1.03645 0.92945 1.03120 1.23789 0.92826 0.93713 0.97873 1.20921 0.94975 0.86863 1.01142 1.58563 1.10511 1.04491 1.65730 1.20515 0.99579 0.90922 1.01913 1.20913 0.99768 0.97049 1.01482 0.89915 0.88891 0.87900 0.74379 0.81594 0.88055 0.88503 0.91931 0.82621 0.83946 0.85628 0.87041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.40 10.97 21.82 0.24 -43.16 16 2 C 0.03 1.78 5.14 85.24 0.44 2.22 16 3 Si 0.99 38.50 29.59 68.60 2.03 40.53 16 4 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 5 H -0.27 -9.67 7.11 99.48 0.71 -8.97 16 6 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 7 C -0.50 -27.64 9.04 23.39 0.21 -27.43 16 8 H 0.07 4.03 7.90 -2.91 -0.02 4.01 16 9 C 0.08 4.31 5.57 -21.27 -0.12 4.19 16 10 C -0.24 -12.89 9.74 22.48 0.22 -12.67 16 11 C -0.09 -4.49 8.61 22.14 0.19 -4.30 16 12 C 0.00 0.03 6.29 38.60 0.24 0.27 16 13 N -0.64 -22.06 5.29 -306.41 -1.62 -23.68 16 14 C 0.52 18.43 7.59 86.55 0.66 19.08 16 15 O -0.59 -26.95 13.67 -4.11 -0.06 -27.01 16 16 C -0.20 -4.64 9.64 23.42 0.23 -4.41 16 17 C -0.06 -1.35 9.35 24.52 0.23 -1.12 16 18 C 0.09 1.25 7.23 85.56 0.62 1.87 16 19 N -0.86 -11.60 9.61 -190.01 -1.83 -13.43 16 20 C -0.11 -5.02 9.90 22.14 0.22 -4.80 16 21 C -0.17 -9.13 8.63 22.48 0.19 -8.93 16 22 H 0.29 13.73 8.30 -92.71 -0.77 12.96 16 23 H 0.09 4.88 8.06 -2.91 -0.02 4.86 16 24 H 0.10 5.24 6.26 -2.91 -0.02 5.22 16 25 H 0.42 10.48 8.80 -92.71 -0.82 9.66 16 26 H 0.17 2.31 7.87 -2.91 -0.02 2.28 16 27 H 0.10 2.89 7.49 -2.91 -0.02 2.87 16 28 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.06 0.58 7.82 -2.39 -0.02 0.56 16 30 H 0.36 3.05 9.08 -89.69 -0.81 2.24 16 31 H 0.35 4.40 8.99 -89.69 -0.81 3.59 16 32 H 0.13 4.78 8.06 -2.91 -0.02 4.75 16 33 H 0.11 6.03 6.20 -2.91 -0.02 6.01 16 Total: -1.00 -70.73 290.13 0.82 -69.91 By element: Atomic # 1 Polarization: 34.13 SS G_CDS: -1.27 Total: 32.85 kcal Atomic # 6 Polarization: -39.34 SS G_CDS: 3.33 Total: -36.02 kcal Atomic # 7 Polarization: -77.06 SS G_CDS: -3.21 Total: -80.27 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -0.06 Total: -27.01 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 2.03 Total: 40.53 kcal Total: -70.73 0.82 -69.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304533850.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.699 kcal (2) G-P(sol) polarization free energy of solvation -70.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds