Wall clock time and date at job start Mon Mar 30 2020 04:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86807 * 119.99657 * 2 1 4 4 H 1.48500 * 109.47112 * 240.00449 * 3 2 1 5 5 H 1.48497 * 109.46935 * 0.02562 * 3 2 1 6 6 H 1.48494 * 109.47302 * 120.00399 * 3 2 1 7 7 C 1.38762 * 120.00237 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99732 * 179.97438 * 7 2 1 9 9 N 1.36811 * 120.00179 * 359.97438 * 7 2 1 10 10 C 1.39333 * 120.00029 * 179.97438 * 9 7 2 11 11 C 1.38960 * 120.12115 * 0.25605 * 10 9 7 12 12 C 1.38108 * 119.97306 * 180.27505 * 11 10 9 13 13 C 1.38377 * 120.23127 * 359.74311 * 12 11 10 14 14 C 1.38215 * 120.23918 * 359.97438 * 13 12 11 15 15 C 1.38682 * 120.02164 * 0.02562 * 14 13 12 16 16 N 1.39969 * 120.10974 * 179.97438 * 15 14 13 17 17 C 1.46768 * 124.34332 * 90.00895 * 16 15 14 18 18 C 1.54487 * 105.46844 * 197.01110 * 17 16 15 19 19 C 1.54619 * 101.76557 * 334.58255 * 18 17 16 20 20 C 1.34413 * 124.35512 * 270.00030 * 16 15 14 21 21 O 1.21293 * 124.94046 * 359.62960 * 20 16 15 22 22 H 0.96999 * 120.00340 * 359.97438 * 1 2 3 23 23 H 0.96994 * 119.99865 * 359.97438 * 9 7 2 24 24 H 1.07994 * 120.01055 * 359.97438 * 11 10 9 25 25 H 1.08005 * 119.88271 * 179.76013 * 12 11 10 26 26 H 1.07995 * 119.87755 * 179.97438 * 13 12 11 27 27 H 1.08008 * 119.98749 * 180.02562 * 14 13 12 28 28 H 1.09000 * 110.25007 * 78.01111 * 17 16 15 29 29 H 1.09004 * 110.24485 * 316.00817 * 17 16 15 30 30 H 1.08996 * 110.96729 * 92.70209 * 18 17 16 31 31 H 1.08999 * 110.96649 * 216.46453 * 18 17 16 32 32 H 1.09007 * 110.48907 * 143.47513 * 19 18 17 33 33 H 1.09001 * 110.48711 * 265.98708 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 3.1037 1.6966 -1.2126 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6966 1.2124 7 6 2.0100 -1.2017 -0.0005 8 1 3.0901 -1.2016 -0.0010 9 7 1.3260 -2.3866 -0.0005 10 6 2.0228 -3.5932 -0.0016 11 6 3.4124 -3.5960 0.0027 12 6 4.0999 -4.7938 -0.0042 13 6 3.4099 -5.9932 -0.0099 14 6 2.0277 -6.0011 -0.0083 15 6 1.3270 -4.8043 -0.0015 16 7 -0.0727 -4.8102 -0.0004 17 6 -0.8997 -4.8198 1.2120 18 6 -2.3062 -5.2589 0.7478 19 6 -2.2980 -4.8256 -0.7364 20 6 -0.8320 -4.8075 -1.1095 21 8 -0.4041 -4.7934 -2.2444 22 1 -0.4850 0.8400 0.0004 23 1 0.3561 -2.3866 0.0002 24 1 3.9544 -2.6620 0.0064 25 1 5.1800 -4.7943 -0.0047 26 1 3.9533 -6.9265 -0.0157 27 1 1.4932 -6.9397 -0.0124 28 1 -0.9410 -3.8219 1.6485 29 1 -0.5015 -5.5322 1.9346 30 1 -2.4275 -6.3383 0.8384 31 1 -3.0823 -4.7326 1.3036 32 1 -2.8384 -5.5483 -1.3479 33 1 -2.7340 -3.8327 -0.8463 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309505884.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:30:21 Heat of formation + Delta-G solvation = -20.880414 kcal Electronic energy + Delta-G solvation = -17787.757117 eV Core-core repulsion = 15005.338711 eV Total energy + Delta-G solvation = -2782.418406 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 246.111 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.67656 -39.63791 -37.35809 -36.79925 -33.93897 -33.51459 -30.33231 -29.30095 -28.46156 -26.57959 -23.87729 -22.74190 -22.47045 -20.75327 -19.44200 -18.59615 -17.82213 -17.44021 -16.57931 -16.28501 -15.96016 -15.42730 -14.89388 -14.77673 -14.66705 -14.44536 -14.02816 -13.85893 -13.53296 -13.45280 -12.94649 -12.58109 -12.38119 -12.33754 -12.12781 -11.96031 -11.89372 -11.66994 -10.92485 -10.62454 -9.77013 -9.54366 -8.54180 -8.50531 -5.76073 0.62291 0.90569 1.36896 1.47045 1.48125 1.58299 2.19547 2.25839 2.85905 3.27503 3.41884 3.52633 3.70761 4.03266 4.18846 4.26986 4.39653 4.60115 4.63418 4.74900 4.81144 4.88230 4.97299 5.05935 5.20430 5.23576 5.29725 5.49673 5.77660 5.81508 5.94483 5.95366 6.22634 6.43063 6.77702 7.26310 7.47660 7.59344 8.67907 Molecular weight = 246.11amu Principal moments of inertia in cm(-1) A = 0.018668 B = 0.009178 C = 0.006819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.506402 B = 3050.152603 C = 4105.443426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.032 4.032 3 Si 0.999 3.001 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.323 4.323 8 H 0.104 0.896 9 N -0.580 5.580 10 C 0.189 3.811 11 C -0.238 4.238 12 C -0.054 4.054 13 C -0.224 4.224 14 C -0.055 4.055 15 C -0.012 4.012 16 N -0.558 5.558 17 C 0.093 3.907 18 C -0.108 4.108 19 C -0.147 4.147 20 C 0.494 3.506 21 O -0.589 6.589 22 H 0.274 0.726 23 H 0.388 0.612 24 H 0.111 0.889 25 H 0.142 0.858 26 H 0.143 0.857 27 H 0.127 0.873 28 H 0.053 0.947 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.116 0.884 32 H 0.121 0.879 33 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.347 -9.662 5.092 11.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.230 4.230 3 Si 0.822 3.178 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.452 4.452 8 H 0.121 0.879 9 N -0.184 5.184 10 C 0.070 3.930 11 C -0.263 4.263 12 C -0.073 4.073 13 C -0.246 4.246 14 C -0.075 4.075 15 C -0.108 4.108 16 N -0.286 5.286 17 C -0.029 4.029 18 C -0.145 4.145 19 C -0.187 4.187 20 C 0.284 3.716 21 O -0.470 6.470 22 H 0.083 0.917 23 H 0.222 0.778 24 H 0.129 0.871 25 H 0.160 0.840 26 H 0.160 0.840 27 H 0.145 0.855 28 H 0.072 0.928 29 H 0.114 0.886 30 H 0.126 0.874 31 H 0.135 0.865 32 H 0.140 0.860 33 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -2.187 -9.183 4.537 10.474 hybrid contribution -0.046 1.243 -0.233 1.266 sum -2.233 -7.940 4.304 9.303 Atomic orbital electron populations 1.69796 1.07314 1.29094 1.50849 1.26182 0.96619 1.02926 0.97270 0.84876 0.77562 0.76087 0.79240 1.19562 1.20398 1.18662 1.19988 0.93384 0.83646 1.48223 0.87854 1.40856 1.07544 1.02306 1.67705 1.18563 0.92780 0.85877 0.95807 1.20602 0.91586 0.99147 1.14970 1.21107 1.00113 0.91295 0.94796 1.20764 0.92993 0.98319 1.12511 1.21013 0.94917 0.95451 0.96096 1.16952 0.81651 0.92125 1.20121 1.45451 1.03543 1.71619 1.07993 1.22412 0.91772 1.01909 0.86782 1.22622 0.95008 1.03979 0.92907 1.22354 0.90813 1.05517 1.00009 1.22087 0.91432 0.74111 0.83926 1.90641 1.80229 1.52673 1.23411 0.91659 0.77849 0.87104 0.84032 0.83969 0.85518 0.92815 0.88587 0.87382 0.86517 0.86048 0.87819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.70 13.05 21.64 0.28 -52.42 16 2 C -0.03 -1.71 5.50 84.85 0.47 -1.24 16 3 Si 1.00 42.53 29.55 68.60 2.03 44.56 16 4 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 6 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 7 C -0.32 -17.84 9.55 84.04 0.80 -17.04 16 8 H 0.10 5.45 5.68 -2.91 -0.02 5.43 16 9 N -0.58 -31.48 5.42 -183.94 -1.00 -32.48 16 10 C 0.19 9.26 6.64 38.47 0.26 9.51 16 11 C -0.24 -10.56 9.30 22.41 0.21 -10.36 16 12 C -0.05 -1.94 10.03 22.27 0.22 -1.72 16 13 C -0.22 -7.51 10.04 22.30 0.22 -7.29 16 14 C -0.05 -2.03 9.96 22.37 0.22 -1.81 16 15 C -0.01 -0.54 5.40 38.30 0.21 -0.33 16 16 N -0.56 -21.64 2.11 -627.05 -1.32 -22.96 16 17 C 0.09 2.65 7.28 86.83 0.63 3.28 16 18 C -0.11 -2.12 7.18 31.65 0.23 -1.89 16 19 C -0.15 -3.98 6.86 30.58 0.21 -3.77 16 20 C 0.49 20.19 7.98 87.90 0.70 20.89 16 21 O -0.59 -30.23 17.71 -3.07 -0.05 -30.29 16 22 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 23 H 0.39 21.84 7.16 -92.71 -0.66 21.18 16 24 H 0.11 4.97 5.96 -2.91 -0.02 4.95 16 25 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 26 H 0.14 3.70 8.06 -2.91 -0.02 3.68 16 27 H 0.13 4.02 8.06 -2.91 -0.02 4.00 16 28 H 0.05 1.73 8.14 -2.39 -0.02 1.72 16 29 H 0.10 2.34 8.14 -2.38 -0.02 2.32 16 30 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.12 1.70 8.14 -2.39 -0.02 1.69 16 32 H 0.12 2.67 8.14 -2.38 -0.02 2.65 16 33 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 Total: -1.00 -71.66 285.03 4.78 -66.88 By element: Atomic # 1 Polarization: 37.98 SS G_CDS: 0.47 Total: 38.45 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: 4.38 Total: -11.74 kcal Atomic # 7 Polarization: -105.82 SS G_CDS: -2.03 Total: -107.85 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -0.05 Total: -30.29 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -71.66 4.78 -66.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309505884.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.995 kcal (2) G-P(sol) polarization free energy of solvation -71.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds